Experiment: M9 plate, 1:1 coculture with Paraburkholderia phenoluptrix CO2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03578 and MPMX20_03579 are separated by 131 nucleotides MPMX20_03579 and MPMX20_03580 are separated by 68 nucleotides
MPMX20_03578: MPMX20_03578 - Alanine--tRNA ligase, at 3,766,862 to 3,769,489
_03578
MPMX20_03579: MPMX20_03579 - Regulatory protein RecX, at 3,769,621 to 3,770,121
_03579
MPMX20_03580: MPMX20_03580 - Protein RecA, at 3,770,190 to 3,771,248
_03580
Position (kb)
3769
3770
3771 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5
6 at 3769.551 kb on - strand at 3769.618 kb on + strand at 3769.626 kb on - strand at 3769.720 kb on + strand, within MPMX20_03579 at 3769.726 kb on + strand, within MPMX20_03579 at 3769.734 kb on - strand, within MPMX20_03579 at 3769.735 kb on - strand, within MPMX20_03579 at 3769.748 kb on + strand, within MPMX20_03579 at 3769.762 kb on - strand, within MPMX20_03579 at 3769.831 kb on + strand, within MPMX20_03579 at 3769.866 kb on - strand, within MPMX20_03579 at 3769.866 kb on - strand, within MPMX20_03579 at 3769.866 kb on - strand, within MPMX20_03579 at 3769.866 kb on - strand, within MPMX20_03579 at 3769.866 kb on - strand, within MPMX20_03579 at 3769.951 kb on + strand, within MPMX20_03579 at 3769.959 kb on - strand, within MPMX20_03579 at 3769.975 kb on + strand, within MPMX20_03579 at 3769.980 kb on + strand, within MPMX20_03579 at 3769.999 kb on - strand, within MPMX20_03579 at 3770.016 kb on - strand, within MPMX20_03579 at 3770.029 kb on + strand, within MPMX20_03579 at 3770.037 kb on - strand, within MPMX20_03579 at 3770.067 kb on + strand, within MPMX20_03579 at 3770.067 kb on + strand, within MPMX20_03579 at 3770.091 kb on + strand at 3770.091 kb on + strand at 3770.167 kb on + strand at 3770.229 kb on - strand at 3770.338 kb on + strand, within MPMX20_03580 at 3770.338 kb on + strand, within MPMX20_03580 at 3770.346 kb on - strand, within MPMX20_03580 at 3770.417 kb on + strand, within MPMX20_03580 at 3770.447 kb on - strand, within MPMX20_03580 at 3770.546 kb on - strand, within MPMX20_03580 at 3770.674 kb on + strand, within MPMX20_03580 at 3770.686 kb on + strand, within MPMX20_03580 at 3770.686 kb on + strand, within MPMX20_03580 at 3770.686 kb on + strand, within MPMX20_03580 at 3770.694 kb on - strand, within MPMX20_03580 at 3770.694 kb on - strand, within MPMX20_03580 at 3770.694 kb on - strand, within MPMX20_03580 at 3770.694 kb on - strand, within MPMX20_03580 at 3770.694 kb on - strand, within MPMX20_03580 at 3770.696 kb on + strand, within MPMX20_03580 at 3770.696 kb on + strand, within MPMX20_03580 at 3770.828 kb on + strand, within MPMX20_03580 at 3770.855 kb on - strand, within MPMX20_03580 at 3770.891 kb on + strand, within MPMX20_03580 at 3770.896 kb on + strand, within MPMX20_03580 at 3770.896 kb on + strand, within MPMX20_03580 at 3770.899 kb on + strand, within MPMX20_03580 at 3770.899 kb on - strand, within MPMX20_03580 at 3770.927 kb on + strand, within MPMX20_03580 at 3770.979 kb on + strand, within MPMX20_03580 at 3770.979 kb on + strand, within MPMX20_03580 at 3770.994 kb on - strand, within MPMX20_03580 at 3771.004 kb on + strand, within MPMX20_03580
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Paraburkholderia phenoluptrix CO2 remove 3,769,551 - +0.2 3,769,618 + +1.6 3,769,626 - +0.2 3,769,720 + MPMX20_03579 0.20 +1.2 3,769,726 + MPMX20_03579 0.21 +0.3 3,769,734 - MPMX20_03579 0.23 +2.3 3,769,735 - MPMX20_03579 0.23 +1.6 3,769,748 + MPMX20_03579 0.25 -0.5 3,769,762 - MPMX20_03579 0.28 +0.2 3,769,831 + MPMX20_03579 0.42 -1.5 3,769,866 - MPMX20_03579 0.49 -1.0 3,769,866 - MPMX20_03579 0.49 -0.2 3,769,866 - MPMX20_03579 0.49 -0.4 3,769,866 - MPMX20_03579 0.49 +2.2 3,769,866 - MPMX20_03579 0.49 +0.1 3,769,951 + MPMX20_03579 0.66 -0.2 3,769,959 - MPMX20_03579 0.67 +2.6 3,769,975 + MPMX20_03579 0.71 +0.3 3,769,980 + MPMX20_03579 0.72 +0.6 3,769,999 - MPMX20_03579 0.75 +3.2 3,770,016 - MPMX20_03579 0.79 +2.3 3,770,029 + MPMX20_03579 0.81 -0.7 3,770,037 - MPMX20_03579 0.83 -3.4 3,770,067 + MPMX20_03579 0.89 -0.8 3,770,067 + MPMX20_03579 0.89 +6.1 3,770,091 + -1.1 3,770,091 + -0.2 3,770,167 + +6.4 3,770,229 - +0.3 3,770,338 + MPMX20_03580 0.14 -0.7 3,770,338 + MPMX20_03580 0.14 +4.2 3,770,346 - MPMX20_03580 0.15 +0.3 3,770,417 + MPMX20_03580 0.21 +0.9 3,770,447 - MPMX20_03580 0.24 +0.2 3,770,546 - MPMX20_03580 0.34 +1.6 3,770,674 + MPMX20_03580 0.46 -0.0 3,770,686 + MPMX20_03580 0.47 -0.2 3,770,686 + MPMX20_03580 0.47 -0.3 3,770,686 + MPMX20_03580 0.47 +0.3 3,770,694 - MPMX20_03580 0.48 -0.0 3,770,694 - MPMX20_03580 0.48 -1.2 3,770,694 - MPMX20_03580 0.48 +0.8 3,770,694 - MPMX20_03580 0.48 +2.2 3,770,694 - MPMX20_03580 0.48 -0.2 3,770,696 + MPMX20_03580 0.48 +1.2 3,770,696 + MPMX20_03580 0.48 +0.8 3,770,828 + MPMX20_03580 0.60 +3.2 3,770,855 - MPMX20_03580 0.63 +1.6 3,770,891 + MPMX20_03580 0.66 -0.0 3,770,896 + MPMX20_03580 0.67 +0.2 3,770,896 + MPMX20_03580 0.67 +0.3 3,770,899 + MPMX20_03580 0.67 +2.2 3,770,899 - MPMX20_03580 0.67 +2.7 3,770,927 + MPMX20_03580 0.70 +1.2 3,770,979 + MPMX20_03580 0.75 +0.6 3,770,979 + MPMX20_03580 0.75 +3.2 3,770,994 - MPMX20_03580 0.76 -0.3 3,771,004 + MPMX20_03580 0.77 +1.6
Or see this region's nucleotide sequence