Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03579

Experiment: M9 plate, 1:1 coculture with Paraburkholderia phenoluptrix CO2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03578 and MPMX20_03579 are separated by 131 nucleotidesMPMX20_03579 and MPMX20_03580 are separated by 68 nucleotides MPMX20_03578: MPMX20_03578 - Alanine--tRNA ligase, at 3,766,862 to 3,769,489 _03578 MPMX20_03579: MPMX20_03579 - Regulatory protein RecX, at 3,769,621 to 3,770,121 _03579 MPMX20_03580: MPMX20_03580 - Protein RecA, at 3,770,190 to 3,771,248 _03580 Position (kb) 3769 3770 3771Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6at 3769.551 kb on - strandat 3769.618 kb on + strandat 3769.626 kb on - strandat 3769.720 kb on + strand, within MPMX20_03579at 3769.726 kb on + strand, within MPMX20_03579at 3769.734 kb on - strand, within MPMX20_03579at 3769.735 kb on - strand, within MPMX20_03579at 3769.748 kb on + strand, within MPMX20_03579at 3769.762 kb on - strand, within MPMX20_03579at 3769.831 kb on + strand, within MPMX20_03579at 3769.866 kb on - strand, within MPMX20_03579at 3769.866 kb on - strand, within MPMX20_03579at 3769.866 kb on - strand, within MPMX20_03579at 3769.866 kb on - strand, within MPMX20_03579at 3769.866 kb on - strand, within MPMX20_03579at 3769.951 kb on + strand, within MPMX20_03579at 3769.959 kb on - strand, within MPMX20_03579at 3769.975 kb on + strand, within MPMX20_03579at 3769.980 kb on + strand, within MPMX20_03579at 3769.999 kb on - strand, within MPMX20_03579at 3770.016 kb on - strand, within MPMX20_03579at 3770.029 kb on + strand, within MPMX20_03579at 3770.037 kb on - strand, within MPMX20_03579at 3770.067 kb on + strand, within MPMX20_03579at 3770.067 kb on + strand, within MPMX20_03579at 3770.091 kb on + strandat 3770.091 kb on + strandat 3770.167 kb on + strandat 3770.229 kb on - strandat 3770.338 kb on + strand, within MPMX20_03580at 3770.338 kb on + strand, within MPMX20_03580at 3770.346 kb on - strand, within MPMX20_03580at 3770.417 kb on + strand, within MPMX20_03580at 3770.447 kb on - strand, within MPMX20_03580at 3770.546 kb on - strand, within MPMX20_03580at 3770.674 kb on + strand, within MPMX20_03580at 3770.686 kb on + strand, within MPMX20_03580at 3770.686 kb on + strand, within MPMX20_03580at 3770.686 kb on + strand, within MPMX20_03580at 3770.694 kb on - strand, within MPMX20_03580at 3770.694 kb on - strand, within MPMX20_03580at 3770.694 kb on - strand, within MPMX20_03580at 3770.694 kb on - strand, within MPMX20_03580at 3770.694 kb on - strand, within MPMX20_03580at 3770.696 kb on + strand, within MPMX20_03580at 3770.696 kb on + strand, within MPMX20_03580at 3770.828 kb on + strand, within MPMX20_03580at 3770.855 kb on - strand, within MPMX20_03580at 3770.891 kb on + strand, within MPMX20_03580at 3770.896 kb on + strand, within MPMX20_03580at 3770.896 kb on + strand, within MPMX20_03580at 3770.899 kb on + strand, within MPMX20_03580at 3770.899 kb on - strand, within MPMX20_03580at 3770.927 kb on + strand, within MPMX20_03580at 3770.979 kb on + strand, within MPMX20_03580at 3770.979 kb on + strand, within MPMX20_03580at 3770.994 kb on - strand, within MPMX20_03580at 3771.004 kb on + strand, within MPMX20_03580

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Paraburkholderia phenoluptrix CO2
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3,769,551 - +0.2
3,769,618 + +1.6
3,769,626 - +0.2
3,769,720 + MPMX20_03579 0.20 +1.2
3,769,726 + MPMX20_03579 0.21 +0.3
3,769,734 - MPMX20_03579 0.23 +2.3
3,769,735 - MPMX20_03579 0.23 +1.6
3,769,748 + MPMX20_03579 0.25 -0.5
3,769,762 - MPMX20_03579 0.28 +0.2
3,769,831 + MPMX20_03579 0.42 -1.5
3,769,866 - MPMX20_03579 0.49 -1.0
3,769,866 - MPMX20_03579 0.49 -0.2
3,769,866 - MPMX20_03579 0.49 -0.4
3,769,866 - MPMX20_03579 0.49 +2.2
3,769,866 - MPMX20_03579 0.49 +0.1
3,769,951 + MPMX20_03579 0.66 -0.2
3,769,959 - MPMX20_03579 0.67 +2.6
3,769,975 + MPMX20_03579 0.71 +0.3
3,769,980 + MPMX20_03579 0.72 +0.6
3,769,999 - MPMX20_03579 0.75 +3.2
3,770,016 - MPMX20_03579 0.79 +2.3
3,770,029 + MPMX20_03579 0.81 -0.7
3,770,037 - MPMX20_03579 0.83 -3.4
3,770,067 + MPMX20_03579 0.89 -0.8
3,770,067 + MPMX20_03579 0.89 +6.1
3,770,091 + -1.1
3,770,091 + -0.2
3,770,167 + +6.4
3,770,229 - +0.3
3,770,338 + MPMX20_03580 0.14 -0.7
3,770,338 + MPMX20_03580 0.14 +4.2
3,770,346 - MPMX20_03580 0.15 +0.3
3,770,417 + MPMX20_03580 0.21 +0.9
3,770,447 - MPMX20_03580 0.24 +0.2
3,770,546 - MPMX20_03580 0.34 +1.6
3,770,674 + MPMX20_03580 0.46 -0.0
3,770,686 + MPMX20_03580 0.47 -0.2
3,770,686 + MPMX20_03580 0.47 -0.3
3,770,686 + MPMX20_03580 0.47 +0.3
3,770,694 - MPMX20_03580 0.48 -0.0
3,770,694 - MPMX20_03580 0.48 -1.2
3,770,694 - MPMX20_03580 0.48 +0.8
3,770,694 - MPMX20_03580 0.48 +2.2
3,770,694 - MPMX20_03580 0.48 -0.2
3,770,696 + MPMX20_03580 0.48 +1.2
3,770,696 + MPMX20_03580 0.48 +0.8
3,770,828 + MPMX20_03580 0.60 +3.2
3,770,855 - MPMX20_03580 0.63 +1.6
3,770,891 + MPMX20_03580 0.66 -0.0
3,770,896 + MPMX20_03580 0.67 +0.2
3,770,896 + MPMX20_03580 0.67 +0.3
3,770,899 + MPMX20_03580 0.67 +2.2
3,770,899 - MPMX20_03580 0.67 +2.7
3,770,927 + MPMX20_03580 0.70 +1.2
3,770,979 + MPMX20_03580 0.75 +0.6
3,770,979 + MPMX20_03580 0.75 +3.2
3,770,994 - MPMX20_03580 0.76 -0.3
3,771,004 + MPMX20_03580 0.77 +1.6

Or see this region's nucleotide sequence