Experiment: M9 plate, 1:1 coculture with Paraburkholderia phenoluptrix CO2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02990 and MPMX20_02991 are separated by 226 nucleotides MPMX20_02991 and MPMX20_02992 are separated by 53 nucleotides MPMX20_02992 and MPMX20_02993 are separated by 49 nucleotides MPMX20_02993 and MPMX20_02994 are separated by 168 nucleotides
MPMX20_02990: MPMX20_02990 - putative FMN/FAD exporter YeeO, at 3,123,410 to 3,124,852
_02990
MPMX20_02991: MPMX20_02991 - tRNA-Asn, at 3,125,079 to 3,125,154
_02991
MPMX20_02992: MPMX20_02992 - hypothetical protein, at 3,125,208 to 3,125,540
_02992
MPMX20_02993: MPMX20_02993 - hypothetical protein, at 3,125,590 to 3,125,925
_02993
MPMX20_02994: MPMX20_02994 - Inner membrane protein YeeA, at 3,126,094 to 3,127,152
_02994
Position (kb)
3125
3126 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3124.234 kb on - strand, within MPMX20_02990 at 3124.251 kb on + strand, within MPMX20_02990 at 3124.268 kb on + strand, within MPMX20_02990 at 3124.276 kb on - strand, within MPMX20_02990 at 3124.286 kb on - strand, within MPMX20_02990 at 3124.291 kb on - strand, within MPMX20_02990 at 3124.367 kb on - strand, within MPMX20_02990 at 3124.417 kb on - strand, within MPMX20_02990 at 3124.428 kb on + strand, within MPMX20_02990 at 3124.566 kb on + strand, within MPMX20_02990 at 3124.587 kb on - strand, within MPMX20_02990 at 3124.600 kb on + strand, within MPMX20_02990 at 3124.600 kb on + strand, within MPMX20_02990 at 3124.600 kb on + strand, within MPMX20_02990 at 3124.603 kb on - strand, within MPMX20_02990 at 3124.618 kb on + strand, within MPMX20_02990 at 3124.663 kb on + strand, within MPMX20_02990 at 3124.663 kb on + strand, within MPMX20_02990 at 3124.663 kb on + strand, within MPMX20_02990 at 3124.671 kb on - strand, within MPMX20_02990 at 3124.671 kb on - strand, within MPMX20_02990 at 3124.671 kb on - strand, within MPMX20_02990 at 3124.755 kb on - strand at 3124.788 kb on - strand at 3124.800 kb on + strand at 3124.829 kb on - strand at 3124.831 kb on + strand at 3124.847 kb on + strand at 3124.938 kb on + strand at 3125.035 kb on - strand at 3125.217 kb on + strand at 3125.247 kb on - strand, within MPMX20_02992 at 3125.299 kb on - strand, within MPMX20_02992 at 3125.303 kb on - strand, within MPMX20_02992 at 3125.324 kb on + strand, within MPMX20_02992 at 3125.374 kb on + strand, within MPMX20_02992 at 3125.376 kb on - strand, within MPMX20_02992 at 3125.382 kb on - strand, within MPMX20_02992 at 3125.412 kb on - strand, within MPMX20_02992 at 3125.425 kb on + strand, within MPMX20_02992 at 3125.425 kb on + strand, within MPMX20_02992 at 3125.668 kb on - strand, within MPMX20_02993 at 3125.668 kb on - strand, within MPMX20_02993 at 3125.678 kb on - strand, within MPMX20_02993 at 3125.737 kb on + strand, within MPMX20_02993 at 3125.756 kb on - strand, within MPMX20_02993 at 3125.804 kb on + strand, within MPMX20_02993 at 3125.897 kb on + strand at 3125.918 kb on - strand at 3125.918 kb on - strand at 3125.978 kb on + strand at 3126.022 kb on - strand at 3126.150 kb on + strand at 3126.150 kb on + strand at 3126.150 kb on + strand at 3126.223 kb on - strand, within MPMX20_02994 at 3126.232 kb on - strand, within MPMX20_02994 at 3126.242 kb on + strand, within MPMX20_02994 at 3126.255 kb on - strand, within MPMX20_02994 at 3126.308 kb on + strand, within MPMX20_02994 at 3126.345 kb on + strand, within MPMX20_02994 at 3126.345 kb on + strand, within MPMX20_02994 at 3126.353 kb on - strand, within MPMX20_02994 at 3126.353 kb on - strand, within MPMX20_02994 at 3126.493 kb on + strand, within MPMX20_02994
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Paraburkholderia phenoluptrix CO2 remove 3,124,234 - MPMX20_02990 0.57 -0.7 3,124,251 + MPMX20_02990 0.58 -0.4 3,124,268 + MPMX20_02990 0.59 -0.6 3,124,276 - MPMX20_02990 0.60 -0.9 3,124,286 - MPMX20_02990 0.61 +1.3 3,124,291 - MPMX20_02990 0.61 -0.6 3,124,367 - MPMX20_02990 0.66 -0.1 3,124,417 - MPMX20_02990 0.70 -0.2 3,124,428 + MPMX20_02990 0.71 +0.9 3,124,566 + MPMX20_02990 0.80 +1.4 3,124,587 - MPMX20_02990 0.82 +2.2 3,124,600 + MPMX20_02990 0.82 +0.4 3,124,600 + MPMX20_02990 0.82 +1.3 3,124,600 + MPMX20_02990 0.82 +0.6 3,124,603 - MPMX20_02990 0.83 -0.2 3,124,618 + MPMX20_02990 0.84 +1.3 3,124,663 + MPMX20_02990 0.87 -0.9 3,124,663 + MPMX20_02990 0.87 +0.1 3,124,663 + MPMX20_02990 0.87 -1.6 3,124,671 - MPMX20_02990 0.87 -0.1 3,124,671 - MPMX20_02990 0.87 -1.9 3,124,671 - MPMX20_02990 0.87 -0.3 3,124,755 - +0.7 3,124,788 - +0.3 3,124,800 + -1.0 3,124,829 - -1.3 3,124,831 + -0.0 3,124,847 + +0.9 3,124,938 + -0.6 3,125,035 - -0.9 3,125,217 + -0.5 3,125,247 - MPMX20_02992 0.12 +0.6 3,125,299 - MPMX20_02992 0.27 +0.9 3,125,303 - MPMX20_02992 0.29 +1.5 3,125,324 + MPMX20_02992 0.35 +0.6 3,125,374 + MPMX20_02992 0.50 +2.5 3,125,376 - MPMX20_02992 0.50 +0.8 3,125,382 - MPMX20_02992 0.52 +0.7 3,125,412 - MPMX20_02992 0.61 +0.4 3,125,425 + MPMX20_02992 0.65 +1.2 3,125,425 + MPMX20_02992 0.65 +2.0 3,125,668 - MPMX20_02993 0.23 +0.9 3,125,668 - MPMX20_02993 0.23 +0.1 3,125,678 - MPMX20_02993 0.26 -1.4 3,125,737 + MPMX20_02993 0.44 +0.4 3,125,756 - MPMX20_02993 0.49 -0.6 3,125,804 + MPMX20_02993 0.64 +2.4 3,125,897 + -1.4 3,125,918 - +1.4 3,125,918 - -1.2 3,125,978 + -1.6 3,126,022 - +0.2 3,126,150 + -0.2 3,126,150 + -0.4 3,126,150 + -1.2 3,126,223 - MPMX20_02994 0.12 -0.1 3,126,232 - MPMX20_02994 0.13 -0.1 3,126,242 + MPMX20_02994 0.14 -1.8 3,126,255 - MPMX20_02994 0.15 -1.5 3,126,308 + MPMX20_02994 0.20 +0.0 3,126,345 + MPMX20_02994 0.24 -0.3 3,126,345 + MPMX20_02994 0.24 -0.3 3,126,353 - MPMX20_02994 0.24 -0.6 3,126,353 - MPMX20_02994 0.24 -0.2 3,126,493 + MPMX20_02994 0.38 -0.4
Or see this region's nucleotide sequence