Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_02992

Experiment: M9 plate, 1:1 coculture with Paraburkholderia phenoluptrix CO2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_02990 and MPMX20_02991 are separated by 226 nucleotidesMPMX20_02991 and MPMX20_02992 are separated by 53 nucleotidesMPMX20_02992 and MPMX20_02993 are separated by 49 nucleotidesMPMX20_02993 and MPMX20_02994 are separated by 168 nucleotides MPMX20_02990: MPMX20_02990 - putative FMN/FAD exporter YeeO, at 3,123,410 to 3,124,852 _02990 MPMX20_02991: MPMX20_02991 - tRNA-Asn, at 3,125,079 to 3,125,154 _02991 MPMX20_02992: MPMX20_02992 - hypothetical protein, at 3,125,208 to 3,125,540 _02992 MPMX20_02993: MPMX20_02993 - hypothetical protein, at 3,125,590 to 3,125,925 _02993 MPMX20_02994: MPMX20_02994 - Inner membrane protein YeeA, at 3,126,094 to 3,127,152 _02994 Position (kb) 3125 3126Strain fitness (log2 ratio) -2 -1 0 1 2at 3124.234 kb on - strand, within MPMX20_02990at 3124.251 kb on + strand, within MPMX20_02990at 3124.268 kb on + strand, within MPMX20_02990at 3124.276 kb on - strand, within MPMX20_02990at 3124.286 kb on - strand, within MPMX20_02990at 3124.291 kb on - strand, within MPMX20_02990at 3124.367 kb on - strand, within MPMX20_02990at 3124.417 kb on - strand, within MPMX20_02990at 3124.428 kb on + strand, within MPMX20_02990at 3124.566 kb on + strand, within MPMX20_02990at 3124.587 kb on - strand, within MPMX20_02990at 3124.600 kb on + strand, within MPMX20_02990at 3124.600 kb on + strand, within MPMX20_02990at 3124.600 kb on + strand, within MPMX20_02990at 3124.603 kb on - strand, within MPMX20_02990at 3124.618 kb on + strand, within MPMX20_02990at 3124.663 kb on + strand, within MPMX20_02990at 3124.663 kb on + strand, within MPMX20_02990at 3124.663 kb on + strand, within MPMX20_02990at 3124.671 kb on - strand, within MPMX20_02990at 3124.671 kb on - strand, within MPMX20_02990at 3124.671 kb on - strand, within MPMX20_02990at 3124.755 kb on - strandat 3124.788 kb on - strandat 3124.800 kb on + strandat 3124.829 kb on - strandat 3124.831 kb on + strandat 3124.847 kb on + strandat 3124.938 kb on + strandat 3125.035 kb on - strandat 3125.217 kb on + strandat 3125.247 kb on - strand, within MPMX20_02992at 3125.299 kb on - strand, within MPMX20_02992at 3125.303 kb on - strand, within MPMX20_02992at 3125.324 kb on + strand, within MPMX20_02992at 3125.374 kb on + strand, within MPMX20_02992at 3125.376 kb on - strand, within MPMX20_02992at 3125.382 kb on - strand, within MPMX20_02992at 3125.412 kb on - strand, within MPMX20_02992at 3125.425 kb on + strand, within MPMX20_02992at 3125.425 kb on + strand, within MPMX20_02992at 3125.668 kb on - strand, within MPMX20_02993at 3125.668 kb on - strand, within MPMX20_02993at 3125.678 kb on - strand, within MPMX20_02993at 3125.737 kb on + strand, within MPMX20_02993at 3125.756 kb on - strand, within MPMX20_02993at 3125.804 kb on + strand, within MPMX20_02993at 3125.897 kb on + strandat 3125.918 kb on - strandat 3125.918 kb on - strandat 3125.978 kb on + strandat 3126.022 kb on - strandat 3126.150 kb on + strandat 3126.150 kb on + strandat 3126.150 kb on + strandat 3126.223 kb on - strand, within MPMX20_02994at 3126.232 kb on - strand, within MPMX20_02994at 3126.242 kb on + strand, within MPMX20_02994at 3126.255 kb on - strand, within MPMX20_02994at 3126.308 kb on + strand, within MPMX20_02994at 3126.345 kb on + strand, within MPMX20_02994at 3126.345 kb on + strand, within MPMX20_02994at 3126.353 kb on - strand, within MPMX20_02994at 3126.353 kb on - strand, within MPMX20_02994at 3126.493 kb on + strand, within MPMX20_02994

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Paraburkholderia phenoluptrix CO2
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3,124,234 - MPMX20_02990 0.57 -0.7
3,124,251 + MPMX20_02990 0.58 -0.4
3,124,268 + MPMX20_02990 0.59 -0.6
3,124,276 - MPMX20_02990 0.60 -0.9
3,124,286 - MPMX20_02990 0.61 +1.3
3,124,291 - MPMX20_02990 0.61 -0.6
3,124,367 - MPMX20_02990 0.66 -0.1
3,124,417 - MPMX20_02990 0.70 -0.2
3,124,428 + MPMX20_02990 0.71 +0.9
3,124,566 + MPMX20_02990 0.80 +1.4
3,124,587 - MPMX20_02990 0.82 +2.2
3,124,600 + MPMX20_02990 0.82 +0.4
3,124,600 + MPMX20_02990 0.82 +1.3
3,124,600 + MPMX20_02990 0.82 +0.6
3,124,603 - MPMX20_02990 0.83 -0.2
3,124,618 + MPMX20_02990 0.84 +1.3
3,124,663 + MPMX20_02990 0.87 -0.9
3,124,663 + MPMX20_02990 0.87 +0.1
3,124,663 + MPMX20_02990 0.87 -1.6
3,124,671 - MPMX20_02990 0.87 -0.1
3,124,671 - MPMX20_02990 0.87 -1.9
3,124,671 - MPMX20_02990 0.87 -0.3
3,124,755 - +0.7
3,124,788 - +0.3
3,124,800 + -1.0
3,124,829 - -1.3
3,124,831 + -0.0
3,124,847 + +0.9
3,124,938 + -0.6
3,125,035 - -0.9
3,125,217 + -0.5
3,125,247 - MPMX20_02992 0.12 +0.6
3,125,299 - MPMX20_02992 0.27 +0.9
3,125,303 - MPMX20_02992 0.29 +1.5
3,125,324 + MPMX20_02992 0.35 +0.6
3,125,374 + MPMX20_02992 0.50 +2.5
3,125,376 - MPMX20_02992 0.50 +0.8
3,125,382 - MPMX20_02992 0.52 +0.7
3,125,412 - MPMX20_02992 0.61 +0.4
3,125,425 + MPMX20_02992 0.65 +1.2
3,125,425 + MPMX20_02992 0.65 +2.0
3,125,668 - MPMX20_02993 0.23 +0.9
3,125,668 - MPMX20_02993 0.23 +0.1
3,125,678 - MPMX20_02993 0.26 -1.4
3,125,737 + MPMX20_02993 0.44 +0.4
3,125,756 - MPMX20_02993 0.49 -0.6
3,125,804 + MPMX20_02993 0.64 +2.4
3,125,897 + -1.4
3,125,918 - +1.4
3,125,918 - -1.2
3,125,978 + -1.6
3,126,022 - +0.2
3,126,150 + -0.2
3,126,150 + -0.4
3,126,150 + -1.2
3,126,223 - MPMX20_02994 0.12 -0.1
3,126,232 - MPMX20_02994 0.13 -0.1
3,126,242 + MPMX20_02994 0.14 -1.8
3,126,255 - MPMX20_02994 0.15 -1.5
3,126,308 + MPMX20_02994 0.20 +0.0
3,126,345 + MPMX20_02994 0.24 -0.3
3,126,345 + MPMX20_02994 0.24 -0.3
3,126,353 - MPMX20_02994 0.24 -0.6
3,126,353 - MPMX20_02994 0.24 -0.2
3,126,493 + MPMX20_02994 0.38 -0.4

Or see this region's nucleotide sequence