Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_02772

Experiment: M9 plate, 1:1 coculture with Paraburkholderia phenoluptrix CO2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_02771 and MPMX20_02772 are separated by 264 nucleotidesMPMX20_02772 and MPMX20_02773 overlap by 4 nucleotidesMPMX20_02773 and MPMX20_02774 are separated by 51 nucleotides MPMX20_02771: MPMX20_02771 - Aspartate--tRNA ligase, at 2,925,166 to 2,926,953 _02771 MPMX20_02772: MPMX20_02772 - Isochorismatase family protein YecD, at 2,927,218 to 2,927,784 _02772 MPMX20_02773: MPMX20_02773 - hypothetical protein, at 2,927,781 to 2,928,599 _02773 MPMX20_02774: MPMX20_02774 - Inner membrane protein YecN, at 2,928,651 to 2,929,046 _02774 Position (kb) 2927 2928Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7at 2927.082 kb on + strandat 2927.082 kb on + strandat 2927.109 kb on + strandat 2927.174 kb on - strandat 2927.182 kb on + strandat 2927.225 kb on + strandat 2927.278 kb on - strand, within MPMX20_02772at 2927.293 kb on + strand, within MPMX20_02772at 2927.303 kb on + strand, within MPMX20_02772at 2927.311 kb on - strand, within MPMX20_02772at 2927.360 kb on - strand, within MPMX20_02772at 2927.411 kb on + strand, within MPMX20_02772at 2927.425 kb on + strand, within MPMX20_02772at 2927.557 kb on - strand, within MPMX20_02772at 2927.648 kb on - strand, within MPMX20_02772at 2927.715 kb on - strand, within MPMX20_02772at 2927.717 kb on + strand, within MPMX20_02772at 2927.756 kb on + strandat 2927.788 kb on + strandat 2927.788 kb on + strandat 2927.788 kb on + strandat 2927.788 kb on + strandat 2927.788 kb on + strandat 2927.788 kb on + strandat 2927.796 kb on - strandat 2927.796 kb on - strandat 2927.796 kb on - strandat 2927.806 kb on - strandat 2927.839 kb on - strandat 2927.840 kb on - strandat 2927.858 kb on - strandat 2927.872 kb on + strand, within MPMX20_02773at 2927.903 kb on + strand, within MPMX20_02773at 2927.903 kb on + strand, within MPMX20_02773at 2927.903 kb on + strand, within MPMX20_02773at 2927.903 kb on + strand, within MPMX20_02773at 2927.903 kb on + strand, within MPMX20_02773at 2927.911 kb on - strand, within MPMX20_02773at 2927.911 kb on - strand, within MPMX20_02773at 2927.911 kb on - strand, within MPMX20_02773at 2927.916 kb on - strand, within MPMX20_02773at 2927.932 kb on - strand, within MPMX20_02773at 2927.990 kb on - strand, within MPMX20_02773at 2927.992 kb on + strand, within MPMX20_02773at 2928.000 kb on - strand, within MPMX20_02773at 2928.015 kb on + strand, within MPMX20_02773at 2928.015 kb on + strand, within MPMX20_02773at 2928.023 kb on - strand, within MPMX20_02773at 2928.094 kb on + strand, within MPMX20_02773at 2928.094 kb on + strand, within MPMX20_02773at 2928.094 kb on + strand, within MPMX20_02773at 2928.094 kb on + strand, within MPMX20_02773at 2928.094 kb on + strand, within MPMX20_02773at 2928.094 kb on + strand, within MPMX20_02773at 2928.094 kb on + strand, within MPMX20_02773at 2928.102 kb on - strand, within MPMX20_02773at 2928.102 kb on - strand, within MPMX20_02773at 2928.102 kb on - strand, within MPMX20_02773at 2928.102 kb on - strand, within MPMX20_02773at 2928.102 kb on - strand, within MPMX20_02773at 2928.102 kb on - strand, within MPMX20_02773at 2928.102 kb on - strand, within MPMX20_02773at 2928.102 kb on - strand, within MPMX20_02773at 2928.102 kb on - strand, within MPMX20_02773at 2928.102 kb on - strand, within MPMX20_02773at 2928.102 kb on - strand, within MPMX20_02773at 2928.102 kb on - strand, within MPMX20_02773at 2928.163 kb on + strand, within MPMX20_02773at 2928.171 kb on - strand, within MPMX20_02773at 2928.178 kb on - strand, within MPMX20_02773at 2928.213 kb on + strand, within MPMX20_02773at 2928.213 kb on + strand, within MPMX20_02773at 2928.221 kb on - strand, within MPMX20_02773at 2928.241 kb on + strand, within MPMX20_02773at 2928.270 kb on + strand, within MPMX20_02773at 2928.278 kb on - strand, within MPMX20_02773at 2928.326 kb on + strand, within MPMX20_02773at 2928.465 kb on - strand, within MPMX20_02773at 2928.502 kb on + strand, within MPMX20_02773at 2928.502 kb on + strand, within MPMX20_02773at 2928.510 kb on - strand, within MPMX20_02773at 2928.510 kb on - strand, within MPMX20_02773at 2928.510 kb on - strand, within MPMX20_02773at 2928.510 kb on - strand, within MPMX20_02773at 2928.582 kb on - strandat 2928.605 kb on + strandat 2928.656 kb on - strandat 2928.679 kb on + strandat 2928.729 kb on - strand, within MPMX20_02774

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Paraburkholderia phenoluptrix CO2
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2,927,082 + +0.0
2,927,082 + -1.8
2,927,109 + +0.5
2,927,174 - -0.5
2,927,182 + -0.8
2,927,225 + -2.0
2,927,278 - MPMX20_02772 0.11 -1.7
2,927,293 + MPMX20_02772 0.13 -2.1
2,927,303 + MPMX20_02772 0.15 -1.7
2,927,311 - MPMX20_02772 0.16 +1.4
2,927,360 - MPMX20_02772 0.25 +0.1
2,927,411 + MPMX20_02772 0.34 +0.6
2,927,425 + MPMX20_02772 0.37 -1.7
2,927,557 - MPMX20_02772 0.60 -0.2
2,927,648 - MPMX20_02772 0.76 -1.0
2,927,715 - MPMX20_02772 0.88 -0.3
2,927,717 + MPMX20_02772 0.88 -1.9
2,927,756 + -0.7
2,927,788 + -0.2
2,927,788 + +0.5
2,927,788 + -0.5
2,927,788 + +0.0
2,927,788 + -0.2
2,927,788 + -1.6
2,927,796 - +2.8
2,927,796 - -0.8
2,927,796 - -0.2
2,927,806 - -0.8
2,927,839 - +0.4
2,927,840 - -1.7
2,927,858 - +1.1
2,927,872 + MPMX20_02773 0.11 +0.3
2,927,903 + MPMX20_02773 0.15 +0.2
2,927,903 + MPMX20_02773 0.15 +1.1
2,927,903 + MPMX20_02773 0.15 -1.2
2,927,903 + MPMX20_02773 0.15 -0.5
2,927,903 + MPMX20_02773 0.15 +0.4
2,927,911 - MPMX20_02773 0.16 -0.8
2,927,911 - MPMX20_02773 0.16 +0.4
2,927,911 - MPMX20_02773 0.16 +0.8
2,927,916 - MPMX20_02773 0.16 -2.2
2,927,932 - MPMX20_02773 0.18 -3.1
2,927,990 - MPMX20_02773 0.26 +3.4
2,927,992 + MPMX20_02773 0.26 -1.5
2,928,000 - MPMX20_02773 0.27 -0.7
2,928,015 + MPMX20_02773 0.29 -1.5
2,928,015 + MPMX20_02773 0.29 -0.2
2,928,023 - MPMX20_02773 0.30 +1.1
2,928,094 + MPMX20_02773 0.38 -0.3
2,928,094 + MPMX20_02773 0.38 -0.0
2,928,094 + MPMX20_02773 0.38 +0.4
2,928,094 + MPMX20_02773 0.38 -1.0
2,928,094 + MPMX20_02773 0.38 +1.4
2,928,094 + MPMX20_02773 0.38 -0.8
2,928,094 + MPMX20_02773 0.38 +2.4
2,928,102 - MPMX20_02773 0.39 -0.4
2,928,102 - MPMX20_02773 0.39 -0.3
2,928,102 - MPMX20_02773 0.39 +0.3
2,928,102 - MPMX20_02773 0.39 -0.1
2,928,102 - MPMX20_02773 0.39 -0.2
2,928,102 - MPMX20_02773 0.39 -0.4
2,928,102 - MPMX20_02773 0.39 +1.1
2,928,102 - MPMX20_02773 0.39 +1.1
2,928,102 - MPMX20_02773 0.39 -0.1
2,928,102 - MPMX20_02773 0.39 +7.2
2,928,102 - MPMX20_02773 0.39 +0.0
2,928,102 - MPMX20_02773 0.39 -0.2
2,928,163 + MPMX20_02773 0.47 -1.3
2,928,171 - MPMX20_02773 0.48 +0.1
2,928,178 - MPMX20_02773 0.48 -1.5
2,928,213 + MPMX20_02773 0.53 +0.4
2,928,213 + MPMX20_02773 0.53 +1.8
2,928,221 - MPMX20_02773 0.54 -0.3
2,928,241 + MPMX20_02773 0.56 +5.0
2,928,270 + MPMX20_02773 0.60 -1.0
2,928,278 - MPMX20_02773 0.61 -2.3
2,928,326 + MPMX20_02773 0.67 -1.3
2,928,465 - MPMX20_02773 0.84 +2.0
2,928,502 + MPMX20_02773 0.88 +0.3
2,928,502 + MPMX20_02773 0.88 -0.9
2,928,510 - MPMX20_02773 0.89 -2.0
2,928,510 - MPMX20_02773 0.89 -0.5
2,928,510 - MPMX20_02773 0.89 -1.5
2,928,510 - MPMX20_02773 0.89 -0.7
2,928,582 - -0.7
2,928,605 + -0.7
2,928,656 - +1.1
2,928,679 + +1.4
2,928,729 - MPMX20_02774 0.20 +0.5

Or see this region's nucleotide sequence