Experiment: M9 plate, 1:1 coculture with Paraburkholderia phenoluptrix CO2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02706 and MPMX20_02707 are separated by 124 nucleotides MPMX20_02707 and MPMX20_02708 are separated by 23 nucleotides MPMX20_02708 and MPMX20_02709 are separated by 3 nucleotides MPMX20_02709 and MPMX20_02710 are separated by 78 nucleotides
MPMX20_02706: MPMX20_02706 - Protein YcgL, at 2,860,627 to 2,860,902
_02706
MPMX20_02707: MPMX20_02707 - Septum site-determining protein MinC, at 2,861,027 to 2,861,734
_02707
MPMX20_02708: MPMX20_02708 - Septum site-determining protein MinD, at 2,861,758 to 2,862,570
_02708
MPMX20_02709: MPMX20_02709 - Cell division topological specificity factor, at 2,862,574 to 2,862,843
_02709
MPMX20_02710: MPMX20_02710 - Ribonuclease D, at 2,862,922 to 2,864,076
_02710
Position (kb)
2861
2862
2863 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16 at 2860.813 kb on + strand, within MPMX20_02706 at 2860.815 kb on + strand, within MPMX20_02706 at 2860.821 kb on - strand, within MPMX20_02706 at 2860.856 kb on + strand, within MPMX20_02706 at 2860.856 kb on + strand, within MPMX20_02706 at 2860.856 kb on + strand, within MPMX20_02706 at 2860.864 kb on - strand, within MPMX20_02706 at 2860.866 kb on + strand, within MPMX20_02706 at 2860.866 kb on + strand, within MPMX20_02706 at 2860.866 kb on + strand, within MPMX20_02706 at 2860.866 kb on + strand, within MPMX20_02706 at 2860.866 kb on + strand, within MPMX20_02706 at 2860.874 kb on - strand, within MPMX20_02706 at 2860.874 kb on - strand, within MPMX20_02706 at 2860.874 kb on - strand, within MPMX20_02706 at 2860.874 kb on - strand, within MPMX20_02706 at 2860.874 kb on - strand, within MPMX20_02706 at 2860.893 kb on - strand at 2860.943 kb on - strand at 2860.943 kb on - strand at 2860.948 kb on - strand at 2860.953 kb on - strand at 2860.960 kb on - strand at 2860.961 kb on + strand at 2860.961 kb on + strand at 2860.969 kb on - strand at 2860.969 kb on - strand at 2860.971 kb on + strand at 2860.976 kb on + strand at 2860.979 kb on - strand at 2860.979 kb on - strand at 2860.992 kb on + strand at 2861.000 kb on - strand at 2861.020 kb on + strand at 2861.020 kb on + strand at 2861.022 kb on - strand at 2861.028 kb on - strand at 2861.028 kb on - strand at 2861.028 kb on - strand at 2861.045 kb on - strand at 2861.055 kb on - strand at 2861.055 kb on - strand at 2861.060 kb on + strand at 2861.060 kb on + strand at 2861.060 kb on + strand at 2861.068 kb on - strand at 2861.068 kb on - strand at 2861.068 kb on - strand at 2861.068 kb on - strand at 2861.068 kb on - strand at 2861.068 kb on - strand at 2861.070 kb on + strand at 2861.075 kb on - strand at 2861.078 kb on - strand at 2861.097 kb on + strand at 2861.186 kb on + strand, within MPMX20_02707 at 2861.186 kb on + strand, within MPMX20_02707 at 2861.504 kb on + strand, within MPMX20_02707 at 2861.715 kb on + strand at 2861.766 kb on + strand at 2861.768 kb on + strand at 2861.808 kb on - strand at 2861.886 kb on + strand, within MPMX20_02708 at 2861.891 kb on + strand, within MPMX20_02708 at 2861.891 kb on + strand, within MPMX20_02708 at 2861.891 kb on + strand, within MPMX20_02708 at 2861.894 kb on - strand, within MPMX20_02708 at 2861.926 kb on + strand, within MPMX20_02708 at 2861.926 kb on + strand, within MPMX20_02708 at 2861.926 kb on + strand, within MPMX20_02708 at 2861.934 kb on - strand, within MPMX20_02708 at 2861.934 kb on - strand, within MPMX20_02708 at 2861.934 kb on - strand, within MPMX20_02708 at 2861.934 kb on - strand, within MPMX20_02708 at 2861.934 kb on - strand, within MPMX20_02708 at 2861.934 kb on - strand, within MPMX20_02708 at 2861.960 kb on - strand, within MPMX20_02708 at 2861.979 kb on + strand, within MPMX20_02708 at 2862.196 kb on - strand, within MPMX20_02708 at 2862.416 kb on + strand, within MPMX20_02708 at 2862.416 kb on + strand, within MPMX20_02708 at 2862.416 kb on + strand, within MPMX20_02708 at 2862.416 kb on + strand, within MPMX20_02708 at 2862.416 kb on + strand, within MPMX20_02708 at 2862.416 kb on + strand, within MPMX20_02708 at 2862.416 kb on + strand, within MPMX20_02708 at 2862.416 kb on + strand, within MPMX20_02708 at 2862.421 kb on + strand, within MPMX20_02708 at 2862.424 kb on - strand, within MPMX20_02708 at 2862.424 kb on - strand, within MPMX20_02708 at 2862.471 kb on - strand, within MPMX20_02708 at 2862.511 kb on + strand at 2862.710 kb on + strand, within MPMX20_02709 at 2862.718 kb on - strand, within MPMX20_02709 at 2862.853 kb on + strand at 2862.876 kb on - strand at 2862.955 kb on - strand at 2863.044 kb on + strand, within MPMX20_02710 at 2863.102 kb on + strand, within MPMX20_02710 at 2863.102 kb on + strand, within MPMX20_02710 at 2863.110 kb on - strand, within MPMX20_02710 at 2863.172 kb on + strand, within MPMX20_02710 at 2863.180 kb on - strand, within MPMX20_02710 at 2863.227 kb on + strand, within MPMX20_02710 at 2863.303 kb on - strand, within MPMX20_02710 at 2863.313 kb on + strand, within MPMX20_02710 at 2863.321 kb on - strand, within MPMX20_02710 at 2863.321 kb on - strand, within MPMX20_02710 at 2863.528 kb on + strand, within MPMX20_02710
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Paraburkholderia phenoluptrix CO2 remove 2,860,813 + MPMX20_02706 0.67 -1.6 2,860,815 + MPMX20_02706 0.68 +3.3 2,860,821 - MPMX20_02706 0.70 +0.0 2,860,856 + MPMX20_02706 0.83 +1.3 2,860,856 + MPMX20_02706 0.83 -1.5 2,860,856 + MPMX20_02706 0.83 -0.5 2,860,864 - MPMX20_02706 0.86 -1.0 2,860,866 + MPMX20_02706 0.87 -1.8 2,860,866 + MPMX20_02706 0.87 +0.8 2,860,866 + MPMX20_02706 0.87 -0.1 2,860,866 + MPMX20_02706 0.87 +0.4 2,860,866 + MPMX20_02706 0.87 +0.2 2,860,874 - MPMX20_02706 0.89 +0.9 2,860,874 - MPMX20_02706 0.89 +1.0 2,860,874 - MPMX20_02706 0.89 +1.8 2,860,874 - MPMX20_02706 0.89 -1.2 2,860,874 - MPMX20_02706 0.89 +1.5 2,860,893 - -0.8 2,860,943 - +0.7 2,860,943 - -0.7 2,860,948 - +0.1 2,860,953 - -0.4 2,860,960 - -0.4 2,860,961 + -0.6 2,860,961 + +1.0 2,860,969 - -0.7 2,860,969 - -1.6 2,860,971 + -0.8 2,860,976 + +0.0 2,860,979 - -1.6 2,860,979 - +1.0 2,860,992 + -1.6 2,861,000 - +2.3 2,861,020 + -0.4 2,861,020 + -0.6 2,861,022 - -1.3 2,861,028 - +0.8 2,861,028 - +0.8 2,861,028 - +16.2 2,861,045 - +0.2 2,861,055 - +2.3 2,861,055 - -0.6 2,861,060 + +0.3 2,861,060 + +2.0 2,861,060 + +0.4 2,861,068 - -2.8 2,861,068 - -0.6 2,861,068 - +0.6 2,861,068 - +0.8 2,861,068 - +1.5 2,861,068 - -1.6 2,861,070 + +0.5 2,861,075 - +0.5 2,861,078 - +0.0 2,861,097 + +1.3 2,861,186 + MPMX20_02707 0.22 -1.0 2,861,186 + MPMX20_02707 0.22 +1.9 2,861,504 + MPMX20_02707 0.67 +4.0 2,861,715 + +2.3 2,861,766 + -0.6 2,861,768 + -0.7 2,861,808 - -1.4 2,861,886 + MPMX20_02708 0.16 +1.2 2,861,891 + MPMX20_02708 0.16 -0.6 2,861,891 + MPMX20_02708 0.16 +0.0 2,861,891 + MPMX20_02708 0.16 +0.3 2,861,894 - MPMX20_02708 0.17 +0.8 2,861,926 + MPMX20_02708 0.21 +0.9 2,861,926 + MPMX20_02708 0.21 +0.8 2,861,926 + MPMX20_02708 0.21 -0.7 2,861,934 - MPMX20_02708 0.22 -0.5 2,861,934 - MPMX20_02708 0.22 -0.5 2,861,934 - MPMX20_02708 0.22 +0.2 2,861,934 - MPMX20_02708 0.22 +0.0 2,861,934 - MPMX20_02708 0.22 +2.0 2,861,934 - MPMX20_02708 0.22 +0.9 2,861,960 - MPMX20_02708 0.25 -0.9 2,861,979 + MPMX20_02708 0.27 +1.3 2,862,196 - MPMX20_02708 0.54 -1.9 2,862,416 + MPMX20_02708 0.81 +0.6 2,862,416 + MPMX20_02708 0.81 +2.0 2,862,416 + MPMX20_02708 0.81 -1.1 2,862,416 + MPMX20_02708 0.81 -2.0 2,862,416 + MPMX20_02708 0.81 +1.3 2,862,416 + MPMX20_02708 0.81 +0.5 2,862,416 + MPMX20_02708 0.81 +0.2 2,862,416 + MPMX20_02708 0.81 +1.4 2,862,421 + MPMX20_02708 0.82 -0.4 2,862,424 - MPMX20_02708 0.82 +4.4 2,862,424 - MPMX20_02708 0.82 +0.3 2,862,471 - MPMX20_02708 0.88 +1.8 2,862,511 + -1.2 2,862,710 + MPMX20_02709 0.50 +2.0 2,862,718 - MPMX20_02709 0.53 +1.3 2,862,853 + +1.6 2,862,876 - -0.5 2,862,955 - -2.5 2,863,044 + MPMX20_02710 0.11 -0.8 2,863,102 + MPMX20_02710 0.16 +1.3 2,863,102 + MPMX20_02710 0.16 -0.6 2,863,110 - MPMX20_02710 0.16 -2.2 2,863,172 + MPMX20_02710 0.22 -0.7 2,863,180 - MPMX20_02710 0.22 +0.3 2,863,227 + MPMX20_02710 0.26 +0.3 2,863,303 - MPMX20_02710 0.33 +0.9 2,863,313 + MPMX20_02710 0.34 +0.3 2,863,321 - MPMX20_02710 0.35 +0.2 2,863,321 - MPMX20_02710 0.35 -0.5 2,863,528 + MPMX20_02710 0.52 -2.4
Or see this region's nucleotide sequence