Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_02665

Experiment: M9 plate, 1:1 coculture with Paraburkholderia phenoluptrix CO2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_02663 and MPMX20_02664 overlap by 8 nucleotidesMPMX20_02664 and MPMX20_02665 are separated by 9 nucleotidesMPMX20_02665 and MPMX20_02666 are separated by 16 nucleotidesMPMX20_02666 and MPMX20_02667 overlap by 4 nucleotides MPMX20_02663: MPMX20_02663 - hypothetical protein, at 2,812,807 to 2,813,370 _02663 MPMX20_02664: MPMX20_02664 - hypothetical protein, at 2,813,363 to 2,814,175 _02664 MPMX20_02665: MPMX20_02665 - hypothetical protein, at 2,814,185 to 2,815,171 _02665 MPMX20_02666: MPMX20_02666 - Protein phosphatase PrpC, at 2,815,188 to 2,815,985 _02666 MPMX20_02667: MPMX20_02667 - hypothetical protein, at 2,815,982 to 2,817,766 _02667 Position (kb) 2814 2815 2816Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2813.355 kb on - strandat 2813.368 kb on - strandat 2813.372 kb on + strandat 2813.416 kb on + strandat 2813.450 kb on - strand, within MPMX20_02664at 2813.720 kb on - strand, within MPMX20_02664at 2813.777 kb on + strand, within MPMX20_02664at 2813.803 kb on + strand, within MPMX20_02664at 2813.883 kb on - strand, within MPMX20_02664at 2813.919 kb on + strand, within MPMX20_02664at 2813.927 kb on - strand, within MPMX20_02664at 2813.954 kb on - strand, within MPMX20_02664at 2813.968 kb on + strand, within MPMX20_02664at 2813.985 kb on + strand, within MPMX20_02664at 2814.025 kb on + strand, within MPMX20_02664at 2814.099 kb on + strandat 2814.099 kb on + strandat 2814.162 kb on - strandat 2814.226 kb on + strandat 2814.240 kb on + strandat 2814.276 kb on - strandat 2814.404 kb on + strand, within MPMX20_02665at 2814.454 kb on - strand, within MPMX20_02665at 2814.477 kb on - strand, within MPMX20_02665at 2814.517 kb on - strand, within MPMX20_02665at 2814.653 kb on + strand, within MPMX20_02665at 2814.663 kb on + strand, within MPMX20_02665at 2814.663 kb on + strand, within MPMX20_02665at 2814.676 kb on + strand, within MPMX20_02665at 2814.699 kb on - strand, within MPMX20_02665at 2814.774 kb on - strand, within MPMX20_02665at 2814.842 kb on + strand, within MPMX20_02665at 2814.842 kb on + strand, within MPMX20_02665at 2814.850 kb on - strand, within MPMX20_02665at 2814.900 kb on + strand, within MPMX20_02665at 2814.958 kb on + strand, within MPMX20_02665at 2815.034 kb on + strand, within MPMX20_02665at 2815.034 kb on + strand, within MPMX20_02665at 2815.082 kb on + strandat 2815.092 kb on - strandat 2815.125 kb on + strandat 2815.146 kb on + strandat 2815.173 kb on - strandat 2815.238 kb on + strandat 2815.250 kb on + strandat 2815.275 kb on - strand, within MPMX20_02666at 2815.300 kb on + strand, within MPMX20_02666at 2815.303 kb on - strand, within MPMX20_02666at 2815.353 kb on + strand, within MPMX20_02666at 2815.363 kb on - strand, within MPMX20_02666at 2815.377 kb on - strand, within MPMX20_02666at 2815.421 kb on + strand, within MPMX20_02666at 2815.441 kb on - strand, within MPMX20_02666at 2815.508 kb on + strand, within MPMX20_02666at 2815.513 kb on + strand, within MPMX20_02666at 2815.516 kb on - strand, within MPMX20_02666at 2815.543 kb on - strand, within MPMX20_02666at 2815.545 kb on + strand, within MPMX20_02666at 2815.545 kb on + strand, within MPMX20_02666at 2815.553 kb on - strand, within MPMX20_02666at 2815.553 kb on - strand, within MPMX20_02666at 2815.566 kb on + strand, within MPMX20_02666at 2815.566 kb on - strand, within MPMX20_02666at 2815.589 kb on - strand, within MPMX20_02666at 2815.707 kb on - strand, within MPMX20_02666at 2815.716 kb on + strand, within MPMX20_02666at 2815.794 kb on - strand, within MPMX20_02666at 2815.886 kb on + strand, within MPMX20_02666at 2815.894 kb on - strand, within MPMX20_02666at 2815.894 kb on - strand, within MPMX20_02666at 2815.936 kb on - strandat 2815.978 kb on - strandat 2816.075 kb on - strandat 2816.075 kb on - strandat 2816.161 kb on + strand, within MPMX20_02667

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Paraburkholderia phenoluptrix CO2
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2,813,355 - +1.0
2,813,368 - -0.3
2,813,372 + +1.8
2,813,416 + -0.7
2,813,450 - MPMX20_02664 0.11 -0.6
2,813,720 - MPMX20_02664 0.44 -0.2
2,813,777 + MPMX20_02664 0.51 +1.6
2,813,803 + MPMX20_02664 0.54 -0.1
2,813,883 - MPMX20_02664 0.64 -2.2
2,813,919 + MPMX20_02664 0.68 +0.2
2,813,927 - MPMX20_02664 0.69 -2.2
2,813,954 - MPMX20_02664 0.73 +1.8
2,813,968 + MPMX20_02664 0.74 -2.1
2,813,985 + MPMX20_02664 0.77 +1.3
2,814,025 + MPMX20_02664 0.81 +1.3
2,814,099 + -0.6
2,814,099 + +2.1
2,814,162 - +1.0
2,814,226 + -0.5
2,814,240 + +0.2
2,814,276 - +0.9
2,814,404 + MPMX20_02665 0.22 +0.3
2,814,454 - MPMX20_02665 0.27 +1.3
2,814,477 - MPMX20_02665 0.30 -0.7
2,814,517 - MPMX20_02665 0.34 +0.1
2,814,653 + MPMX20_02665 0.47 +0.4
2,814,663 + MPMX20_02665 0.48 +0.6
2,814,663 + MPMX20_02665 0.48 +2.5
2,814,676 + MPMX20_02665 0.50 -0.2
2,814,699 - MPMX20_02665 0.52 +1.5
2,814,774 - MPMX20_02665 0.60 +0.5
2,814,842 + MPMX20_02665 0.67 +0.6
2,814,842 + MPMX20_02665 0.67 +1.1
2,814,850 - MPMX20_02665 0.67 -0.7
2,814,900 + MPMX20_02665 0.72 +0.8
2,814,958 + MPMX20_02665 0.78 +0.5
2,815,034 + MPMX20_02665 0.86 +1.5
2,815,034 + MPMX20_02665 0.86 +1.5
2,815,082 + -2.1
2,815,092 - -1.0
2,815,125 + +0.8
2,815,146 + +0.6
2,815,173 - +0.0
2,815,238 + +0.8
2,815,250 + -0.2
2,815,275 - MPMX20_02666 0.11 -1.1
2,815,300 + MPMX20_02666 0.14 +0.3
2,815,303 - MPMX20_02666 0.14 -1.0
2,815,353 + MPMX20_02666 0.21 +1.3
2,815,363 - MPMX20_02666 0.22 -0.4
2,815,377 - MPMX20_02666 0.24 +0.2
2,815,421 + MPMX20_02666 0.29 +2.3
2,815,441 - MPMX20_02666 0.32 -1.1
2,815,508 + MPMX20_02666 0.40 +0.5
2,815,513 + MPMX20_02666 0.41 -0.2
2,815,516 - MPMX20_02666 0.41 -0.5
2,815,543 - MPMX20_02666 0.44 -0.2
2,815,545 + MPMX20_02666 0.45 -1.4
2,815,545 + MPMX20_02666 0.45 +0.1
2,815,553 - MPMX20_02666 0.46 +0.3
2,815,553 - MPMX20_02666 0.46 +0.5
2,815,566 + MPMX20_02666 0.47 -0.7
2,815,566 - MPMX20_02666 0.47 +1.3
2,815,589 - MPMX20_02666 0.50 +0.2
2,815,707 - MPMX20_02666 0.65 -1.9
2,815,716 + MPMX20_02666 0.66 +3.6
2,815,794 - MPMX20_02666 0.76 -0.1
2,815,886 + MPMX20_02666 0.87 -1.4
2,815,894 - MPMX20_02666 0.88 -0.4
2,815,894 - MPMX20_02666 0.88 -2.6
2,815,936 - +0.8
2,815,978 - +1.3
2,816,075 - -0.8
2,816,075 - +0.6
2,816,161 + MPMX20_02667 0.10 -1.6

Or see this region's nucleotide sequence