Experiment: M9 plate, 1:1 coculture with Paraburkholderia phenoluptrix CO2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02663 and MPMX20_02664 overlap by 8 nucleotides MPMX20_02664 and MPMX20_02665 are separated by 9 nucleotides MPMX20_02665 and MPMX20_02666 are separated by 16 nucleotides MPMX20_02666 and MPMX20_02667 overlap by 4 nucleotides
MPMX20_02663: MPMX20_02663 - hypothetical protein, at 2,812,807 to 2,813,370
_02663
MPMX20_02664: MPMX20_02664 - hypothetical protein, at 2,813,363 to 2,814,175
_02664
MPMX20_02665: MPMX20_02665 - hypothetical protein, at 2,814,185 to 2,815,171
_02665
MPMX20_02666: MPMX20_02666 - Protein phosphatase PrpC, at 2,815,188 to 2,815,985
_02666
MPMX20_02667: MPMX20_02667 - hypothetical protein, at 2,815,982 to 2,817,766
_02667
Position (kb)
2814
2815
2816 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2813.355 kb on - strand at 2813.368 kb on - strand at 2813.372 kb on + strand at 2813.416 kb on + strand at 2813.450 kb on - strand, within MPMX20_02664 at 2813.720 kb on - strand, within MPMX20_02664 at 2813.777 kb on + strand, within MPMX20_02664 at 2813.803 kb on + strand, within MPMX20_02664 at 2813.883 kb on - strand, within MPMX20_02664 at 2813.919 kb on + strand, within MPMX20_02664 at 2813.927 kb on - strand, within MPMX20_02664 at 2813.954 kb on - strand, within MPMX20_02664 at 2813.968 kb on + strand, within MPMX20_02664 at 2813.985 kb on + strand, within MPMX20_02664 at 2814.025 kb on + strand, within MPMX20_02664 at 2814.099 kb on + strand at 2814.099 kb on + strand at 2814.162 kb on - strand at 2814.226 kb on + strand at 2814.240 kb on + strand at 2814.276 kb on - strand at 2814.404 kb on + strand, within MPMX20_02665 at 2814.454 kb on - strand, within MPMX20_02665 at 2814.477 kb on - strand, within MPMX20_02665 at 2814.517 kb on - strand, within MPMX20_02665 at 2814.653 kb on + strand, within MPMX20_02665 at 2814.663 kb on + strand, within MPMX20_02665 at 2814.663 kb on + strand, within MPMX20_02665 at 2814.676 kb on + strand, within MPMX20_02665 at 2814.699 kb on - strand, within MPMX20_02665 at 2814.774 kb on - strand, within MPMX20_02665 at 2814.842 kb on + strand, within MPMX20_02665 at 2814.842 kb on + strand, within MPMX20_02665 at 2814.850 kb on - strand, within MPMX20_02665 at 2814.900 kb on + strand, within MPMX20_02665 at 2814.958 kb on + strand, within MPMX20_02665 at 2815.034 kb on + strand, within MPMX20_02665 at 2815.034 kb on + strand, within MPMX20_02665 at 2815.082 kb on + strand at 2815.092 kb on - strand at 2815.125 kb on + strand at 2815.146 kb on + strand at 2815.173 kb on - strand at 2815.238 kb on + strand at 2815.250 kb on + strand at 2815.275 kb on - strand, within MPMX20_02666 at 2815.300 kb on + strand, within MPMX20_02666 at 2815.303 kb on - strand, within MPMX20_02666 at 2815.353 kb on + strand, within MPMX20_02666 at 2815.363 kb on - strand, within MPMX20_02666 at 2815.377 kb on - strand, within MPMX20_02666 at 2815.421 kb on + strand, within MPMX20_02666 at 2815.441 kb on - strand, within MPMX20_02666 at 2815.508 kb on + strand, within MPMX20_02666 at 2815.513 kb on + strand, within MPMX20_02666 at 2815.516 kb on - strand, within MPMX20_02666 at 2815.543 kb on - strand, within MPMX20_02666 at 2815.545 kb on + strand, within MPMX20_02666 at 2815.545 kb on + strand, within MPMX20_02666 at 2815.553 kb on - strand, within MPMX20_02666 at 2815.553 kb on - strand, within MPMX20_02666 at 2815.566 kb on + strand, within MPMX20_02666 at 2815.566 kb on - strand, within MPMX20_02666 at 2815.589 kb on - strand, within MPMX20_02666 at 2815.707 kb on - strand, within MPMX20_02666 at 2815.716 kb on + strand, within MPMX20_02666 at 2815.794 kb on - strand, within MPMX20_02666 at 2815.886 kb on + strand, within MPMX20_02666 at 2815.894 kb on - strand, within MPMX20_02666 at 2815.894 kb on - strand, within MPMX20_02666 at 2815.936 kb on - strand at 2815.978 kb on - strand at 2816.075 kb on - strand at 2816.075 kb on - strand at 2816.161 kb on + strand, within MPMX20_02667
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Paraburkholderia phenoluptrix CO2 remove 2,813,355 - +1.0 2,813,368 - -0.3 2,813,372 + +1.8 2,813,416 + -0.7 2,813,450 - MPMX20_02664 0.11 -0.6 2,813,720 - MPMX20_02664 0.44 -0.2 2,813,777 + MPMX20_02664 0.51 +1.6 2,813,803 + MPMX20_02664 0.54 -0.1 2,813,883 - MPMX20_02664 0.64 -2.2 2,813,919 + MPMX20_02664 0.68 +0.2 2,813,927 - MPMX20_02664 0.69 -2.2 2,813,954 - MPMX20_02664 0.73 +1.8 2,813,968 + MPMX20_02664 0.74 -2.1 2,813,985 + MPMX20_02664 0.77 +1.3 2,814,025 + MPMX20_02664 0.81 +1.3 2,814,099 + -0.6 2,814,099 + +2.1 2,814,162 - +1.0 2,814,226 + -0.5 2,814,240 + +0.2 2,814,276 - +0.9 2,814,404 + MPMX20_02665 0.22 +0.3 2,814,454 - MPMX20_02665 0.27 +1.3 2,814,477 - MPMX20_02665 0.30 -0.7 2,814,517 - MPMX20_02665 0.34 +0.1 2,814,653 + MPMX20_02665 0.47 +0.4 2,814,663 + MPMX20_02665 0.48 +0.6 2,814,663 + MPMX20_02665 0.48 +2.5 2,814,676 + MPMX20_02665 0.50 -0.2 2,814,699 - MPMX20_02665 0.52 +1.5 2,814,774 - MPMX20_02665 0.60 +0.5 2,814,842 + MPMX20_02665 0.67 +0.6 2,814,842 + MPMX20_02665 0.67 +1.1 2,814,850 - MPMX20_02665 0.67 -0.7 2,814,900 + MPMX20_02665 0.72 +0.8 2,814,958 + MPMX20_02665 0.78 +0.5 2,815,034 + MPMX20_02665 0.86 +1.5 2,815,034 + MPMX20_02665 0.86 +1.5 2,815,082 + -2.1 2,815,092 - -1.0 2,815,125 + +0.8 2,815,146 + +0.6 2,815,173 - +0.0 2,815,238 + +0.8 2,815,250 + -0.2 2,815,275 - MPMX20_02666 0.11 -1.1 2,815,300 + MPMX20_02666 0.14 +0.3 2,815,303 - MPMX20_02666 0.14 -1.0 2,815,353 + MPMX20_02666 0.21 +1.3 2,815,363 - MPMX20_02666 0.22 -0.4 2,815,377 - MPMX20_02666 0.24 +0.2 2,815,421 + MPMX20_02666 0.29 +2.3 2,815,441 - MPMX20_02666 0.32 -1.1 2,815,508 + MPMX20_02666 0.40 +0.5 2,815,513 + MPMX20_02666 0.41 -0.2 2,815,516 - MPMX20_02666 0.41 -0.5 2,815,543 - MPMX20_02666 0.44 -0.2 2,815,545 + MPMX20_02666 0.45 -1.4 2,815,545 + MPMX20_02666 0.45 +0.1 2,815,553 - MPMX20_02666 0.46 +0.3 2,815,553 - MPMX20_02666 0.46 +0.5 2,815,566 + MPMX20_02666 0.47 -0.7 2,815,566 - MPMX20_02666 0.47 +1.3 2,815,589 - MPMX20_02666 0.50 +0.2 2,815,707 - MPMX20_02666 0.65 -1.9 2,815,716 + MPMX20_02666 0.66 +3.6 2,815,794 - MPMX20_02666 0.76 -0.1 2,815,886 + MPMX20_02666 0.87 -1.4 2,815,894 - MPMX20_02666 0.88 -0.4 2,815,894 - MPMX20_02666 0.88 -2.6 2,815,936 - +0.8 2,815,978 - +1.3 2,816,075 - -0.8 2,816,075 - +0.6 2,816,161 + MPMX20_02667 0.10 -1.6
Or see this region's nucleotide sequence