Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_02509

Experiment: M9 plate, 1:1 coculture with Paraburkholderia phenoluptrix CO2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_02507 and MPMX20_02508 are separated by 96 nucleotidesMPMX20_02508 and MPMX20_02509 overlap by 4 nucleotidesMPMX20_02509 and MPMX20_02510 are separated by 268 nucleotides MPMX20_02507: MPMX20_02507 - Ribosomal large subunit pseudouridine synthase B, at 2,648,562 to 2,649,437 _02507 MPMX20_02508: MPMX20_02508 - putative protein YciO, at 2,649,534 to 2,650,154 _02508 MPMX20_02509: MPMX20_02509 - 5'-3' exoribonuclease, at 2,650,151 to 2,651,044 _02509 MPMX20_02510: MPMX20_02510 - Anthranilate synthase component 1, at 2,651,313 to 2,652,875 _02510 Position (kb) 2650 2651 2652Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2649.167 kb on - strand, within MPMX20_02507at 2649.187 kb on - strand, within MPMX20_02507at 2649.201 kb on + strand, within MPMX20_02507at 2649.201 kb on - strand, within MPMX20_02507at 2649.316 kb on + strand, within MPMX20_02507at 2649.359 kb on - strandat 2649.416 kb on - strandat 2649.477 kb on + strandat 2649.485 kb on - strandat 2649.489 kb on + strandat 2649.502 kb on - strandat 2649.546 kb on - strandat 2649.552 kb on - strandat 2649.563 kb on - strandat 2649.568 kb on - strandat 2649.575 kb on + strandat 2649.607 kb on + strand, within MPMX20_02508at 2649.620 kb on + strand, within MPMX20_02508at 2649.620 kb on + strand, within MPMX20_02508at 2649.645 kb on - strand, within MPMX20_02508at 2649.669 kb on + strand, within MPMX20_02508at 2649.724 kb on - strand, within MPMX20_02508at 2649.724 kb on - strand, within MPMX20_02508at 2649.724 kb on - strand, within MPMX20_02508at 2649.724 kb on - strand, within MPMX20_02508at 2649.724 kb on - strand, within MPMX20_02508at 2649.810 kb on - strand, within MPMX20_02508at 2649.828 kb on + strand, within MPMX20_02508at 2649.838 kb on + strand, within MPMX20_02508at 2649.912 kb on + strand, within MPMX20_02508at 2649.925 kb on - strand, within MPMX20_02508at 2649.926 kb on - strand, within MPMX20_02508at 2649.956 kb on + strand, within MPMX20_02508at 2649.962 kb on + strand, within MPMX20_02508at 2650.040 kb on - strand, within MPMX20_02508at 2650.074 kb on + strand, within MPMX20_02508at 2650.212 kb on - strandat 2650.256 kb on + strand, within MPMX20_02509at 2650.295 kb on + strand, within MPMX20_02509at 2650.319 kb on - strand, within MPMX20_02509at 2650.502 kb on - strand, within MPMX20_02509at 2650.513 kb on - strand, within MPMX20_02509at 2650.565 kb on - strand, within MPMX20_02509at 2650.647 kb on + strand, within MPMX20_02509at 2650.843 kb on - strand, within MPMX20_02509at 2650.890 kb on + strand, within MPMX20_02509at 2650.890 kb on + strand, within MPMX20_02509at 2650.905 kb on + strand, within MPMX20_02509at 2650.928 kb on + strand, within MPMX20_02509at 2650.946 kb on + strand, within MPMX20_02509at 2650.954 kb on - strand, within MPMX20_02509at 2650.967 kb on - strandat 2650.984 kb on + strandat 2650.992 kb on - strandat 2650.992 kb on - strandat 2650.992 kb on - strandat 2650.992 kb on - strandat 2651.022 kb on + strandat 2651.039 kb on + strandat 2651.049 kb on + strandat 2651.049 kb on + strandat 2651.057 kb on - strandat 2651.057 kb on - strandat 2651.154 kb on + strandat 2651.235 kb on - strandat 2651.293 kb on + strandat 2651.298 kb on + strandat 2651.306 kb on - strandat 2651.355 kb on - strandat 2651.355 kb on - strandat 2651.371 kb on + strandat 2651.379 kb on - strandat 2651.393 kb on + strandat 2651.393 kb on + strandat 2651.401 kb on - strandat 2651.401 kb on - strandat 2651.490 kb on - strand, within MPMX20_02510at 2651.494 kb on + strand, within MPMX20_02510at 2651.559 kb on + strand, within MPMX20_02510at 2651.561 kb on + strand, within MPMX20_02510at 2651.607 kb on + strand, within MPMX20_02510at 2651.663 kb on + strand, within MPMX20_02510at 2651.671 kb on - strand, within MPMX20_02510at 2651.671 kb on - strand, within MPMX20_02510at 2651.671 kb on - strand, within MPMX20_02510at 2651.708 kb on - strand, within MPMX20_02510at 2651.816 kb on + strand, within MPMX20_02510at 2651.887 kb on + strand, within MPMX20_02510at 2651.906 kb on - strand, within MPMX20_02510at 2651.908 kb on + strand, within MPMX20_02510at 2651.916 kb on - strand, within MPMX20_02510at 2651.944 kb on + strand, within MPMX20_02510at 2651.986 kb on - strand, within MPMX20_02510at 2651.988 kb on + strand, within MPMX20_02510at 2651.988 kb on - strand, within MPMX20_02510at 2652.011 kb on + strand, within MPMX20_02510at 2652.044 kb on + strand, within MPMX20_02510

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Paraburkholderia phenoluptrix CO2
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2,649,167 - MPMX20_02507 0.69 -0.4
2,649,187 - MPMX20_02507 0.71 -1.7
2,649,201 + MPMX20_02507 0.73 +0.1
2,649,201 - MPMX20_02507 0.73 +0.7
2,649,316 + MPMX20_02507 0.86 +1.1
2,649,359 - +1.6
2,649,416 - +2.4
2,649,477 + +1.8
2,649,485 - +2.8
2,649,489 + -1.8
2,649,502 - +0.4
2,649,546 - -0.6
2,649,552 - +0.4
2,649,563 - -0.2
2,649,568 - -1.3
2,649,575 + -1.2
2,649,607 + MPMX20_02508 0.12 -0.6
2,649,620 + MPMX20_02508 0.14 +0.8
2,649,620 + MPMX20_02508 0.14 -0.8
2,649,645 - MPMX20_02508 0.18 -0.3
2,649,669 + MPMX20_02508 0.22 -1.3
2,649,724 - MPMX20_02508 0.31 -1.0
2,649,724 - MPMX20_02508 0.31 +1.0
2,649,724 - MPMX20_02508 0.31 -0.1
2,649,724 - MPMX20_02508 0.31 -1.4
2,649,724 - MPMX20_02508 0.31 +0.1
2,649,810 - MPMX20_02508 0.44 -0.4
2,649,828 + MPMX20_02508 0.47 -1.2
2,649,838 + MPMX20_02508 0.49 +0.4
2,649,912 + MPMX20_02508 0.61 +0.2
2,649,925 - MPMX20_02508 0.63 -1.2
2,649,926 - MPMX20_02508 0.63 -1.7
2,649,956 + MPMX20_02508 0.68 -1.3
2,649,962 + MPMX20_02508 0.69 -1.4
2,650,040 - MPMX20_02508 0.81 -1.2
2,650,074 + MPMX20_02508 0.87 -0.3
2,650,212 - -0.6
2,650,256 + MPMX20_02509 0.12 +1.5
2,650,295 + MPMX20_02509 0.16 -0.9
2,650,319 - MPMX20_02509 0.19 -1.2
2,650,502 - MPMX20_02509 0.39 -2.0
2,650,513 - MPMX20_02509 0.40 +0.6
2,650,565 - MPMX20_02509 0.46 -1.7
2,650,647 + MPMX20_02509 0.55 -0.7
2,650,843 - MPMX20_02509 0.77 -0.3
2,650,890 + MPMX20_02509 0.83 +0.1
2,650,890 + MPMX20_02509 0.83 -1.3
2,650,905 + MPMX20_02509 0.84 -0.7
2,650,928 + MPMX20_02509 0.87 +1.4
2,650,946 + MPMX20_02509 0.89 -2.3
2,650,954 - MPMX20_02509 0.90 +1.4
2,650,967 - -0.3
2,650,984 + -1.4
2,650,992 - +0.1
2,650,992 - -1.6
2,650,992 - -0.1
2,650,992 - -1.4
2,651,022 + -0.0
2,651,039 + -0.6
2,651,049 + -0.7
2,651,049 + -0.7
2,651,057 - -0.7
2,651,057 - -0.4
2,651,154 + +0.7
2,651,235 - -1.4
2,651,293 + +0.1
2,651,298 + -1.4
2,651,306 - +0.6
2,651,355 - +0.4
2,651,355 - -0.8
2,651,371 + +2.6
2,651,379 - -1.6
2,651,393 + -1.3
2,651,393 + -1.5
2,651,401 - +0.8
2,651,401 - +0.5
2,651,490 - MPMX20_02510 0.11 -0.7
2,651,494 + MPMX20_02510 0.12 +3.4
2,651,559 + MPMX20_02510 0.16 +0.7
2,651,561 + MPMX20_02510 0.16 -1.0
2,651,607 + MPMX20_02510 0.19 -2.5
2,651,663 + MPMX20_02510 0.22 +1.1
2,651,671 - MPMX20_02510 0.23 -2.0
2,651,671 - MPMX20_02510 0.23 -0.6
2,651,671 - MPMX20_02510 0.23 +0.7
2,651,708 - MPMX20_02510 0.25 +0.3
2,651,816 + MPMX20_02510 0.32 -0.3
2,651,887 + MPMX20_02510 0.37 +0.7
2,651,906 - MPMX20_02510 0.38 +0.8
2,651,908 + MPMX20_02510 0.38 -1.3
2,651,916 - MPMX20_02510 0.39 -1.5
2,651,944 + MPMX20_02510 0.40 +1.2
2,651,986 - MPMX20_02510 0.43 +2.6
2,651,988 + MPMX20_02510 0.43 -1.8
2,651,988 - MPMX20_02510 0.43 -0.9
2,652,011 + MPMX20_02510 0.45 -1.0
2,652,044 + MPMX20_02510 0.47 +0.6

Or see this region's nucleotide sequence