Experiment: M9 plate, 1:1 coculture with Paraburkholderia phenoluptrix CO2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02507 and MPMX20_02508 are separated by 96 nucleotides MPMX20_02508 and MPMX20_02509 overlap by 4 nucleotides MPMX20_02509 and MPMX20_02510 are separated by 268 nucleotides
MPMX20_02507: MPMX20_02507 - Ribosomal large subunit pseudouridine synthase B, at 2,648,562 to 2,649,437
_02507
MPMX20_02508: MPMX20_02508 - putative protein YciO, at 2,649,534 to 2,650,154
_02508
MPMX20_02509: MPMX20_02509 - 5'-3' exoribonuclease, at 2,650,151 to 2,651,044
_02509
MPMX20_02510: MPMX20_02510 - Anthranilate synthase component 1, at 2,651,313 to 2,652,875
_02510
Position (kb)
2650
2651
2652 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2649.167 kb on - strand, within MPMX20_02507 at 2649.187 kb on - strand, within MPMX20_02507 at 2649.201 kb on + strand, within MPMX20_02507 at 2649.201 kb on - strand, within MPMX20_02507 at 2649.316 kb on + strand, within MPMX20_02507 at 2649.359 kb on - strand at 2649.416 kb on - strand at 2649.477 kb on + strand at 2649.485 kb on - strand at 2649.489 kb on + strand at 2649.502 kb on - strand at 2649.546 kb on - strand at 2649.552 kb on - strand at 2649.563 kb on - strand at 2649.568 kb on - strand at 2649.575 kb on + strand at 2649.607 kb on + strand, within MPMX20_02508 at 2649.620 kb on + strand, within MPMX20_02508 at 2649.620 kb on + strand, within MPMX20_02508 at 2649.645 kb on - strand, within MPMX20_02508 at 2649.669 kb on + strand, within MPMX20_02508 at 2649.724 kb on - strand, within MPMX20_02508 at 2649.724 kb on - strand, within MPMX20_02508 at 2649.724 kb on - strand, within MPMX20_02508 at 2649.724 kb on - strand, within MPMX20_02508 at 2649.724 kb on - strand, within MPMX20_02508 at 2649.810 kb on - strand, within MPMX20_02508 at 2649.828 kb on + strand, within MPMX20_02508 at 2649.838 kb on + strand, within MPMX20_02508 at 2649.912 kb on + strand, within MPMX20_02508 at 2649.925 kb on - strand, within MPMX20_02508 at 2649.926 kb on - strand, within MPMX20_02508 at 2649.956 kb on + strand, within MPMX20_02508 at 2649.962 kb on + strand, within MPMX20_02508 at 2650.040 kb on - strand, within MPMX20_02508 at 2650.074 kb on + strand, within MPMX20_02508 at 2650.212 kb on - strand at 2650.256 kb on + strand, within MPMX20_02509 at 2650.295 kb on + strand, within MPMX20_02509 at 2650.319 kb on - strand, within MPMX20_02509 at 2650.502 kb on - strand, within MPMX20_02509 at 2650.513 kb on - strand, within MPMX20_02509 at 2650.565 kb on - strand, within MPMX20_02509 at 2650.647 kb on + strand, within MPMX20_02509 at 2650.843 kb on - strand, within MPMX20_02509 at 2650.890 kb on + strand, within MPMX20_02509 at 2650.890 kb on + strand, within MPMX20_02509 at 2650.905 kb on + strand, within MPMX20_02509 at 2650.928 kb on + strand, within MPMX20_02509 at 2650.946 kb on + strand, within MPMX20_02509 at 2650.954 kb on - strand, within MPMX20_02509 at 2650.967 kb on - strand at 2650.984 kb on + strand at 2650.992 kb on - strand at 2650.992 kb on - strand at 2650.992 kb on - strand at 2650.992 kb on - strand at 2651.022 kb on + strand at 2651.039 kb on + strand at 2651.049 kb on + strand at 2651.049 kb on + strand at 2651.057 kb on - strand at 2651.057 kb on - strand at 2651.154 kb on + strand at 2651.235 kb on - strand at 2651.293 kb on + strand at 2651.298 kb on + strand at 2651.306 kb on - strand at 2651.355 kb on - strand at 2651.355 kb on - strand at 2651.371 kb on + strand at 2651.379 kb on - strand at 2651.393 kb on + strand at 2651.393 kb on + strand at 2651.401 kb on - strand at 2651.401 kb on - strand at 2651.490 kb on - strand, within MPMX20_02510 at 2651.494 kb on + strand, within MPMX20_02510 at 2651.559 kb on + strand, within MPMX20_02510 at 2651.561 kb on + strand, within MPMX20_02510 at 2651.607 kb on + strand, within MPMX20_02510 at 2651.663 kb on + strand, within MPMX20_02510 at 2651.671 kb on - strand, within MPMX20_02510 at 2651.671 kb on - strand, within MPMX20_02510 at 2651.671 kb on - strand, within MPMX20_02510 at 2651.708 kb on - strand, within MPMX20_02510 at 2651.816 kb on + strand, within MPMX20_02510 at 2651.887 kb on + strand, within MPMX20_02510 at 2651.906 kb on - strand, within MPMX20_02510 at 2651.908 kb on + strand, within MPMX20_02510 at 2651.916 kb on - strand, within MPMX20_02510 at 2651.944 kb on + strand, within MPMX20_02510 at 2651.986 kb on - strand, within MPMX20_02510 at 2651.988 kb on + strand, within MPMX20_02510 at 2651.988 kb on - strand, within MPMX20_02510 at 2652.011 kb on + strand, within MPMX20_02510 at 2652.044 kb on + strand, within MPMX20_02510
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Paraburkholderia phenoluptrix CO2 remove 2,649,167 - MPMX20_02507 0.69 -0.4 2,649,187 - MPMX20_02507 0.71 -1.7 2,649,201 + MPMX20_02507 0.73 +0.1 2,649,201 - MPMX20_02507 0.73 +0.7 2,649,316 + MPMX20_02507 0.86 +1.1 2,649,359 - +1.6 2,649,416 - +2.4 2,649,477 + +1.8 2,649,485 - +2.8 2,649,489 + -1.8 2,649,502 - +0.4 2,649,546 - -0.6 2,649,552 - +0.4 2,649,563 - -0.2 2,649,568 - -1.3 2,649,575 + -1.2 2,649,607 + MPMX20_02508 0.12 -0.6 2,649,620 + MPMX20_02508 0.14 +0.8 2,649,620 + MPMX20_02508 0.14 -0.8 2,649,645 - MPMX20_02508 0.18 -0.3 2,649,669 + MPMX20_02508 0.22 -1.3 2,649,724 - MPMX20_02508 0.31 -1.0 2,649,724 - MPMX20_02508 0.31 +1.0 2,649,724 - MPMX20_02508 0.31 -0.1 2,649,724 - MPMX20_02508 0.31 -1.4 2,649,724 - MPMX20_02508 0.31 +0.1 2,649,810 - MPMX20_02508 0.44 -0.4 2,649,828 + MPMX20_02508 0.47 -1.2 2,649,838 + MPMX20_02508 0.49 +0.4 2,649,912 + MPMX20_02508 0.61 +0.2 2,649,925 - MPMX20_02508 0.63 -1.2 2,649,926 - MPMX20_02508 0.63 -1.7 2,649,956 + MPMX20_02508 0.68 -1.3 2,649,962 + MPMX20_02508 0.69 -1.4 2,650,040 - MPMX20_02508 0.81 -1.2 2,650,074 + MPMX20_02508 0.87 -0.3 2,650,212 - -0.6 2,650,256 + MPMX20_02509 0.12 +1.5 2,650,295 + MPMX20_02509 0.16 -0.9 2,650,319 - MPMX20_02509 0.19 -1.2 2,650,502 - MPMX20_02509 0.39 -2.0 2,650,513 - MPMX20_02509 0.40 +0.6 2,650,565 - MPMX20_02509 0.46 -1.7 2,650,647 + MPMX20_02509 0.55 -0.7 2,650,843 - MPMX20_02509 0.77 -0.3 2,650,890 + MPMX20_02509 0.83 +0.1 2,650,890 + MPMX20_02509 0.83 -1.3 2,650,905 + MPMX20_02509 0.84 -0.7 2,650,928 + MPMX20_02509 0.87 +1.4 2,650,946 + MPMX20_02509 0.89 -2.3 2,650,954 - MPMX20_02509 0.90 +1.4 2,650,967 - -0.3 2,650,984 + -1.4 2,650,992 - +0.1 2,650,992 - -1.6 2,650,992 - -0.1 2,650,992 - -1.4 2,651,022 + -0.0 2,651,039 + -0.6 2,651,049 + -0.7 2,651,049 + -0.7 2,651,057 - -0.7 2,651,057 - -0.4 2,651,154 + +0.7 2,651,235 - -1.4 2,651,293 + +0.1 2,651,298 + -1.4 2,651,306 - +0.6 2,651,355 - +0.4 2,651,355 - -0.8 2,651,371 + +2.6 2,651,379 - -1.6 2,651,393 + -1.3 2,651,393 + -1.5 2,651,401 - +0.8 2,651,401 - +0.5 2,651,490 - MPMX20_02510 0.11 -0.7 2,651,494 + MPMX20_02510 0.12 +3.4 2,651,559 + MPMX20_02510 0.16 +0.7 2,651,561 + MPMX20_02510 0.16 -1.0 2,651,607 + MPMX20_02510 0.19 -2.5 2,651,663 + MPMX20_02510 0.22 +1.1 2,651,671 - MPMX20_02510 0.23 -2.0 2,651,671 - MPMX20_02510 0.23 -0.6 2,651,671 - MPMX20_02510 0.23 +0.7 2,651,708 - MPMX20_02510 0.25 +0.3 2,651,816 + MPMX20_02510 0.32 -0.3 2,651,887 + MPMX20_02510 0.37 +0.7 2,651,906 - MPMX20_02510 0.38 +0.8 2,651,908 + MPMX20_02510 0.38 -1.3 2,651,916 - MPMX20_02510 0.39 -1.5 2,651,944 + MPMX20_02510 0.40 +1.2 2,651,986 - MPMX20_02510 0.43 +2.6 2,651,988 + MPMX20_02510 0.43 -1.8 2,651,988 - MPMX20_02510 0.43 -0.9 2,652,011 + MPMX20_02510 0.45 -1.0 2,652,044 + MPMX20_02510 0.47 +0.6
Or see this region's nucleotide sequence