Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_02058

Experiment: M9 plate, 1:1 coculture with Paraburkholderia phenoluptrix CO2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_02057 and MPMX20_02058 are separated by 335 nucleotidesMPMX20_02058 and MPMX20_02059 are separated by 189 nucleotides MPMX20_02057: MPMX20_02057 - hypothetical protein, at 2,150,853 to 2,151,674 _02057 MPMX20_02058: MPMX20_02058 - hypothetical protein, at 2,152,010 to 2,152,330 _02058 MPMX20_02059: MPMX20_02059 - Thermostable carboxypeptidase 1, at 2,152,520 to 2,154,007 _02059 Position (kb) 2152 2153Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 2151.177 kb on - strand, within MPMX20_02057at 2151.177 kb on - strand, within MPMX20_02057at 2151.217 kb on - strand, within MPMX20_02057at 2151.276 kb on - strand, within MPMX20_02057at 2151.286 kb on + strand, within MPMX20_02057at 2151.311 kb on + strand, within MPMX20_02057at 2151.321 kb on + strand, within MPMX20_02057at 2151.323 kb on + strand, within MPMX20_02057at 2151.433 kb on - strand, within MPMX20_02057at 2151.461 kb on - strand, within MPMX20_02057at 2151.461 kb on - strand, within MPMX20_02057at 2151.591 kb on + strand, within MPMX20_02057at 2151.648 kb on - strandat 2151.651 kb on - strandat 2151.667 kb on - strandat 2151.673 kb on + strandat 2151.688 kb on - strandat 2151.741 kb on - strandat 2151.743 kb on + strandat 2151.743 kb on + strandat 2151.743 kb on + strandat 2151.751 kb on - strandat 2151.751 kb on - strandat 2151.805 kb on + strandat 2151.836 kb on + strandat 2151.857 kb on + strandat 2151.865 kb on - strandat 2151.865 kb on - strandat 2151.930 kb on - strandat 2151.944 kb on - strandat 2152.022 kb on + strandat 2152.036 kb on + strandat 2152.044 kb on - strand, within MPMX20_02058at 2152.044 kb on - strand, within MPMX20_02058at 2152.185 kb on + strand, within MPMX20_02058at 2152.193 kb on - strand, within MPMX20_02058at 2152.193 kb on - strand, within MPMX20_02058at 2152.290 kb on + strand, within MPMX20_02058at 2152.295 kb on + strand, within MPMX20_02058at 2152.295 kb on + strand, within MPMX20_02058at 2152.298 kb on - strand, within MPMX20_02058at 2152.302 kb on + strandat 2152.303 kb on - strandat 2152.303 kb on - strandat 2152.306 kb on + strandat 2152.327 kb on - strandat 2152.400 kb on + strandat 2152.400 kb on + strandat 2152.464 kb on - strandat 2152.465 kb on + strandat 2152.469 kb on + strandat 2152.469 kb on + strandat 2152.473 kb on - strandat 2152.576 kb on - strandat 2152.602 kb on - strandat 2152.626 kb on + strandat 2152.639 kb on - strandat 2152.694 kb on - strand, within MPMX20_02059at 2152.739 kb on - strand, within MPMX20_02059at 2152.798 kb on + strand, within MPMX20_02059at 2152.839 kb on + strand, within MPMX20_02059at 2152.844 kb on + strand, within MPMX20_02059at 2152.844 kb on + strand, within MPMX20_02059at 2152.896 kb on + strand, within MPMX20_02059at 2152.981 kb on - strand, within MPMX20_02059at 2152.981 kb on - strand, within MPMX20_02059at 2152.996 kb on + strand, within MPMX20_02059at 2153.004 kb on - strand, within MPMX20_02059at 2153.004 kb on - strand, within MPMX20_02059at 2153.004 kb on - strand, within MPMX20_02059at 2153.037 kb on - strand, within MPMX20_02059at 2153.063 kb on + strand, within MPMX20_02059at 2153.092 kb on + strand, within MPMX20_02059at 2153.145 kb on - strand, within MPMX20_02059at 2153.223 kb on + strand, within MPMX20_02059at 2153.231 kb on - strand, within MPMX20_02059at 2153.245 kb on - strand, within MPMX20_02059at 2153.280 kb on + strand, within MPMX20_02059at 2153.305 kb on + strand, within MPMX20_02059at 2153.305 kb on + strand, within MPMX20_02059at 2153.313 kb on - strand, within MPMX20_02059

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Paraburkholderia phenoluptrix CO2
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2,151,177 - MPMX20_02057 0.39 -0.4
2,151,177 - MPMX20_02057 0.39 +0.0
2,151,217 - MPMX20_02057 0.44 +4.3
2,151,276 - MPMX20_02057 0.51 -0.1
2,151,286 + MPMX20_02057 0.53 +0.4
2,151,311 + MPMX20_02057 0.56 -1.0
2,151,321 + MPMX20_02057 0.57 -0.6
2,151,323 + MPMX20_02057 0.57 -1.2
2,151,433 - MPMX20_02057 0.71 -0.4
2,151,461 - MPMX20_02057 0.74 +0.8
2,151,461 - MPMX20_02057 0.74 -0.9
2,151,591 + MPMX20_02057 0.90 +0.4
2,151,648 - -0.0
2,151,651 - +1.8
2,151,667 - +2.1
2,151,673 + +1.4
2,151,688 - -1.7
2,151,741 - +1.2
2,151,743 + +0.6
2,151,743 + -0.1
2,151,743 + +0.4
2,151,751 - -0.5
2,151,751 - -1.8
2,151,805 + -0.9
2,151,836 + +0.1
2,151,857 + -1.4
2,151,865 - -0.9
2,151,865 - +0.8
2,151,930 - +0.9
2,151,944 - -0.1
2,152,022 + -0.9
2,152,036 + +0.2
2,152,044 - MPMX20_02058 0.11 -2.1
2,152,044 - MPMX20_02058 0.11 -1.0
2,152,185 + MPMX20_02058 0.55 -0.7
2,152,193 - MPMX20_02058 0.57 -1.1
2,152,193 - MPMX20_02058 0.57 +0.8
2,152,290 + MPMX20_02058 0.87 +0.8
2,152,295 + MPMX20_02058 0.89 +0.7
2,152,295 + MPMX20_02058 0.89 -2.0
2,152,298 - MPMX20_02058 0.90 +6.1
2,152,302 + +1.7
2,152,303 - -0.5
2,152,303 - -0.9
2,152,306 + +0.3
2,152,327 - -1.1
2,152,400 + +0.7
2,152,400 + -0.3
2,152,464 - +1.1
2,152,465 + -2.1
2,152,469 + -0.5
2,152,469 + -2.6
2,152,473 - +1.4
2,152,576 - +0.3
2,152,602 - -0.2
2,152,626 + -0.4
2,152,639 - +0.2
2,152,694 - MPMX20_02059 0.12 -0.1
2,152,739 - MPMX20_02059 0.15 -0.3
2,152,798 + MPMX20_02059 0.19 +0.5
2,152,839 + MPMX20_02059 0.21 -0.5
2,152,844 + MPMX20_02059 0.22 -1.2
2,152,844 + MPMX20_02059 0.22 +0.5
2,152,896 + MPMX20_02059 0.25 +0.2
2,152,981 - MPMX20_02059 0.31 +0.8
2,152,981 - MPMX20_02059 0.31 +1.0
2,152,996 + MPMX20_02059 0.32 -2.3
2,153,004 - MPMX20_02059 0.33 +0.1
2,153,004 - MPMX20_02059 0.33 +0.4
2,153,004 - MPMX20_02059 0.33 +1.4
2,153,037 - MPMX20_02059 0.35 -1.0
2,153,063 + MPMX20_02059 0.36 -0.1
2,153,092 + MPMX20_02059 0.38 -1.5
2,153,145 - MPMX20_02059 0.42 -2.5
2,153,223 + MPMX20_02059 0.47 +0.9
2,153,231 - MPMX20_02059 0.48 -0.2
2,153,245 - MPMX20_02059 0.49 -0.4
2,153,280 + MPMX20_02059 0.51 -0.6
2,153,305 + MPMX20_02059 0.53 +0.8
2,153,305 + MPMX20_02059 0.53 -1.3
2,153,313 - MPMX20_02059 0.53 +0.1

Or see this region's nucleotide sequence