Experiment: M9 plate, 1:1 coculture with Paraburkholderia phenoluptrix CO2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02057 and MPMX20_02058 are separated by 335 nucleotides MPMX20_02058 and MPMX20_02059 are separated by 189 nucleotides
MPMX20_02057: MPMX20_02057 - hypothetical protein, at 2,150,853 to 2,151,674
_02057
MPMX20_02058: MPMX20_02058 - hypothetical protein, at 2,152,010 to 2,152,330
_02058
MPMX20_02059: MPMX20_02059 - Thermostable carboxypeptidase 1, at 2,152,520 to 2,154,007
_02059
Position (kb)
2152
2153 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5
6 at 2151.177 kb on - strand, within MPMX20_02057 at 2151.177 kb on - strand, within MPMX20_02057 at 2151.217 kb on - strand, within MPMX20_02057 at 2151.276 kb on - strand, within MPMX20_02057 at 2151.286 kb on + strand, within MPMX20_02057 at 2151.311 kb on + strand, within MPMX20_02057 at 2151.321 kb on + strand, within MPMX20_02057 at 2151.323 kb on + strand, within MPMX20_02057 at 2151.433 kb on - strand, within MPMX20_02057 at 2151.461 kb on - strand, within MPMX20_02057 at 2151.461 kb on - strand, within MPMX20_02057 at 2151.591 kb on + strand, within MPMX20_02057 at 2151.648 kb on - strand at 2151.651 kb on - strand at 2151.667 kb on - strand at 2151.673 kb on + strand at 2151.688 kb on - strand at 2151.741 kb on - strand at 2151.743 kb on + strand at 2151.743 kb on + strand at 2151.743 kb on + strand at 2151.751 kb on - strand at 2151.751 kb on - strand at 2151.805 kb on + strand at 2151.836 kb on + strand at 2151.857 kb on + strand at 2151.865 kb on - strand at 2151.865 kb on - strand at 2151.930 kb on - strand at 2151.944 kb on - strand at 2152.022 kb on + strand at 2152.036 kb on + strand at 2152.044 kb on - strand, within MPMX20_02058 at 2152.044 kb on - strand, within MPMX20_02058 at 2152.185 kb on + strand, within MPMX20_02058 at 2152.193 kb on - strand, within MPMX20_02058 at 2152.193 kb on - strand, within MPMX20_02058 at 2152.290 kb on + strand, within MPMX20_02058 at 2152.295 kb on + strand, within MPMX20_02058 at 2152.295 kb on + strand, within MPMX20_02058 at 2152.298 kb on - strand, within MPMX20_02058 at 2152.302 kb on + strand at 2152.303 kb on - strand at 2152.303 kb on - strand at 2152.306 kb on + strand at 2152.327 kb on - strand at 2152.400 kb on + strand at 2152.400 kb on + strand at 2152.464 kb on - strand at 2152.465 kb on + strand at 2152.469 kb on + strand at 2152.469 kb on + strand at 2152.473 kb on - strand at 2152.576 kb on - strand at 2152.602 kb on - strand at 2152.626 kb on + strand at 2152.639 kb on - strand at 2152.694 kb on - strand, within MPMX20_02059 at 2152.739 kb on - strand, within MPMX20_02059 at 2152.798 kb on + strand, within MPMX20_02059 at 2152.839 kb on + strand, within MPMX20_02059 at 2152.844 kb on + strand, within MPMX20_02059 at 2152.844 kb on + strand, within MPMX20_02059 at 2152.896 kb on + strand, within MPMX20_02059 at 2152.981 kb on - strand, within MPMX20_02059 at 2152.981 kb on - strand, within MPMX20_02059 at 2152.996 kb on + strand, within MPMX20_02059 at 2153.004 kb on - strand, within MPMX20_02059 at 2153.004 kb on - strand, within MPMX20_02059 at 2153.004 kb on - strand, within MPMX20_02059 at 2153.037 kb on - strand, within MPMX20_02059 at 2153.063 kb on + strand, within MPMX20_02059 at 2153.092 kb on + strand, within MPMX20_02059 at 2153.145 kb on - strand, within MPMX20_02059 at 2153.223 kb on + strand, within MPMX20_02059 at 2153.231 kb on - strand, within MPMX20_02059 at 2153.245 kb on - strand, within MPMX20_02059 at 2153.280 kb on + strand, within MPMX20_02059 at 2153.305 kb on + strand, within MPMX20_02059 at 2153.305 kb on + strand, within MPMX20_02059 at 2153.313 kb on - strand, within MPMX20_02059
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Paraburkholderia phenoluptrix CO2 remove 2,151,177 - MPMX20_02057 0.39 -0.4 2,151,177 - MPMX20_02057 0.39 +0.0 2,151,217 - MPMX20_02057 0.44 +4.3 2,151,276 - MPMX20_02057 0.51 -0.1 2,151,286 + MPMX20_02057 0.53 +0.4 2,151,311 + MPMX20_02057 0.56 -1.0 2,151,321 + MPMX20_02057 0.57 -0.6 2,151,323 + MPMX20_02057 0.57 -1.2 2,151,433 - MPMX20_02057 0.71 -0.4 2,151,461 - MPMX20_02057 0.74 +0.8 2,151,461 - MPMX20_02057 0.74 -0.9 2,151,591 + MPMX20_02057 0.90 +0.4 2,151,648 - -0.0 2,151,651 - +1.8 2,151,667 - +2.1 2,151,673 + +1.4 2,151,688 - -1.7 2,151,741 - +1.2 2,151,743 + +0.6 2,151,743 + -0.1 2,151,743 + +0.4 2,151,751 - -0.5 2,151,751 - -1.8 2,151,805 + -0.9 2,151,836 + +0.1 2,151,857 + -1.4 2,151,865 - -0.9 2,151,865 - +0.8 2,151,930 - +0.9 2,151,944 - -0.1 2,152,022 + -0.9 2,152,036 + +0.2 2,152,044 - MPMX20_02058 0.11 -2.1 2,152,044 - MPMX20_02058 0.11 -1.0 2,152,185 + MPMX20_02058 0.55 -0.7 2,152,193 - MPMX20_02058 0.57 -1.1 2,152,193 - MPMX20_02058 0.57 +0.8 2,152,290 + MPMX20_02058 0.87 +0.8 2,152,295 + MPMX20_02058 0.89 +0.7 2,152,295 + MPMX20_02058 0.89 -2.0 2,152,298 - MPMX20_02058 0.90 +6.1 2,152,302 + +1.7 2,152,303 - -0.5 2,152,303 - -0.9 2,152,306 + +0.3 2,152,327 - -1.1 2,152,400 + +0.7 2,152,400 + -0.3 2,152,464 - +1.1 2,152,465 + -2.1 2,152,469 + -0.5 2,152,469 + -2.6 2,152,473 - +1.4 2,152,576 - +0.3 2,152,602 - -0.2 2,152,626 + -0.4 2,152,639 - +0.2 2,152,694 - MPMX20_02059 0.12 -0.1 2,152,739 - MPMX20_02059 0.15 -0.3 2,152,798 + MPMX20_02059 0.19 +0.5 2,152,839 + MPMX20_02059 0.21 -0.5 2,152,844 + MPMX20_02059 0.22 -1.2 2,152,844 + MPMX20_02059 0.22 +0.5 2,152,896 + MPMX20_02059 0.25 +0.2 2,152,981 - MPMX20_02059 0.31 +0.8 2,152,981 - MPMX20_02059 0.31 +1.0 2,152,996 + MPMX20_02059 0.32 -2.3 2,153,004 - MPMX20_02059 0.33 +0.1 2,153,004 - MPMX20_02059 0.33 +0.4 2,153,004 - MPMX20_02059 0.33 +1.4 2,153,037 - MPMX20_02059 0.35 -1.0 2,153,063 + MPMX20_02059 0.36 -0.1 2,153,092 + MPMX20_02059 0.38 -1.5 2,153,145 - MPMX20_02059 0.42 -2.5 2,153,223 + MPMX20_02059 0.47 +0.9 2,153,231 - MPMX20_02059 0.48 -0.2 2,153,245 - MPMX20_02059 0.49 -0.4 2,153,280 + MPMX20_02059 0.51 -0.6 2,153,305 + MPMX20_02059 0.53 +0.8 2,153,305 + MPMX20_02059 0.53 -1.3 2,153,313 - MPMX20_02059 0.53 +0.1
Or see this region's nucleotide sequence