Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01882

Experiment: M9 plate, 1:1 coculture with Paraburkholderia phenoluptrix CO2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01880 and MPMX20_01881 are separated by 11 nucleotidesMPMX20_01881 and MPMX20_01882 are separated by 87 nucleotidesMPMX20_01882 and MPMX20_01883 are separated by 118 nucleotidesMPMX20_01883 and MPMX20_01884 are separated by 48 nucleotides MPMX20_01880: MPMX20_01880 - 6-phospho-beta-glucosidase, at 1,972,410 to 1,973,765 _01880 MPMX20_01881: MPMX20_01881 - Chitooligosaccharide deacetylase ChbG, at 1,973,777 to 1,974,535 _01881 MPMX20_01882: MPMX20_01882 - Catalase HPII, at 1,974,623 to 1,976,872 _01882 MPMX20_01883: MPMX20_01883 - Cell division activator CedA, at 1,976,991 to 1,977,314 _01883 MPMX20_01884: MPMX20_01884 - L-cystine uptake protein TcyP, at 1,977,363 to 1,978,754 _01884 Position (kb) 1974 1975 1976 1977Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7at 1973.623 kb on - strand, within MPMX20_01880at 1973.646 kb on + strandat 1973.759 kb on + strandat 1973.759 kb on + strandat 1973.767 kb on - strandat 1973.825 kb on + strandat 1973.843 kb on + strandat 1973.872 kb on - strand, within MPMX20_01881at 1973.887 kb on + strand, within MPMX20_01881at 1973.887 kb on + strand, within MPMX20_01881at 1973.887 kb on + strand, within MPMX20_01881at 1973.887 kb on + strand, within MPMX20_01881at 1973.887 kb on + strand, within MPMX20_01881at 1973.887 kb on + strand, within MPMX20_01881at 1973.895 kb on - strand, within MPMX20_01881at 1973.915 kb on + strand, within MPMX20_01881at 1973.920 kb on + strand, within MPMX20_01881at 1973.923 kb on - strand, within MPMX20_01881at 1973.959 kb on - strand, within MPMX20_01881at 1974.017 kb on - strand, within MPMX20_01881at 1974.042 kb on + strand, within MPMX20_01881at 1974.047 kb on + strand, within MPMX20_01881at 1974.097 kb on + strand, within MPMX20_01881at 1974.097 kb on + strand, within MPMX20_01881at 1974.205 kb on + strand, within MPMX20_01881at 1974.205 kb on + strand, within MPMX20_01881at 1974.205 kb on + strand, within MPMX20_01881at 1974.213 kb on - strand, within MPMX20_01881at 1974.213 kb on - strand, within MPMX20_01881at 1974.213 kb on - strand, within MPMX20_01881at 1974.213 kb on - strand, within MPMX20_01881at 1974.259 kb on + strand, within MPMX20_01881at 1974.388 kb on + strand, within MPMX20_01881at 1974.512 kb on - strandat 1974.519 kb on + strandat 1974.522 kb on - strandat 1974.606 kb on - strandat 1974.666 kb on - strandat 1974.756 kb on + strandat 1974.756 kb on - strandat 1974.757 kb on + strandat 1974.764 kb on - strandat 1974.764 kb on - strandat 1974.768 kb on + strandat 1974.776 kb on - strandat 1974.776 kb on - strandat 1974.794 kb on - strandat 1974.812 kb on - strandat 1974.903 kb on - strand, within MPMX20_01882at 1974.943 kb on + strand, within MPMX20_01882at 1974.946 kb on - strand, within MPMX20_01882at 1974.965 kb on + strand, within MPMX20_01882at 1975.037 kb on - strand, within MPMX20_01882at 1975.100 kb on + strand, within MPMX20_01882at 1975.111 kb on + strand, within MPMX20_01882at 1975.189 kb on + strand, within MPMX20_01882at 1975.214 kb on + strand, within MPMX20_01882at 1975.294 kb on + strand, within MPMX20_01882at 1975.302 kb on - strand, within MPMX20_01882at 1975.309 kb on - strand, within MPMX20_01882at 1975.344 kb on - strand, within MPMX20_01882at 1975.346 kb on + strand, within MPMX20_01882at 1975.347 kb on + strand, within MPMX20_01882at 1975.347 kb on + strand, within MPMX20_01882at 1975.365 kb on - strand, within MPMX20_01882at 1975.506 kb on + strand, within MPMX20_01882at 1975.633 kb on - strand, within MPMX20_01882at 1975.638 kb on + strand, within MPMX20_01882at 1975.658 kb on + strand, within MPMX20_01882at 1975.663 kb on + strand, within MPMX20_01882at 1975.671 kb on - strand, within MPMX20_01882at 1975.798 kb on + strand, within MPMX20_01882at 1975.798 kb on + strand, within MPMX20_01882at 1975.806 kb on - strand, within MPMX20_01882at 1975.853 kb on - strand, within MPMX20_01882at 1975.867 kb on + strand, within MPMX20_01882at 1975.875 kb on - strand, within MPMX20_01882at 1975.902 kb on + strand, within MPMX20_01882at 1975.937 kb on + strand, within MPMX20_01882at 1975.979 kb on - strand, within MPMX20_01882at 1975.979 kb on - strand, within MPMX20_01882at 1976.001 kb on + strand, within MPMX20_01882at 1976.058 kb on - strand, within MPMX20_01882at 1976.072 kb on + strand, within MPMX20_01882at 1976.072 kb on + strand, within MPMX20_01882at 1976.164 kb on - strand, within MPMX20_01882at 1976.176 kb on + strand, within MPMX20_01882at 1976.202 kb on + strand, within MPMX20_01882at 1976.210 kb on - strand, within MPMX20_01882at 1976.211 kb on + strand, within MPMX20_01882at 1976.360 kb on - strand, within MPMX20_01882at 1976.372 kb on + strand, within MPMX20_01882at 1976.372 kb on + strand, within MPMX20_01882at 1976.380 kb on - strand, within MPMX20_01882at 1976.449 kb on + strand, within MPMX20_01882at 1976.470 kb on + strand, within MPMX20_01882at 1976.475 kb on - strand, within MPMX20_01882at 1976.493 kb on - strand, within MPMX20_01882at 1976.517 kb on + strand, within MPMX20_01882at 1976.517 kb on + strand, within MPMX20_01882at 1976.517 kb on + strand, within MPMX20_01882at 1976.517 kb on + strand, within MPMX20_01882at 1976.517 kb on + strand, within MPMX20_01882at 1976.525 kb on - strand, within MPMX20_01882at 1976.557 kb on + strand, within MPMX20_01882at 1976.565 kb on - strand, within MPMX20_01882at 1976.565 kb on - strand, within MPMX20_01882at 1976.643 kb on - strand, within MPMX20_01882at 1976.733 kb on + strandat 1976.768 kb on - strandat 1976.804 kb on + strandat 1976.812 kb on - strandat 1976.864 kb on + strandat 1976.913 kb on + strandat 1976.913 kb on + strandat 1976.921 kb on - strandat 1976.921 kb on - strandat 1976.996 kb on + strandat 1977.048 kb on + strand, within MPMX20_01883at 1977.105 kb on + strand, within MPMX20_01883at 1977.105 kb on + strand, within MPMX20_01883at 1977.113 kb on - strand, within MPMX20_01883at 1977.113 kb on - strand, within MPMX20_01883at 1977.113 kb on - strand, within MPMX20_01883at 1977.133 kb on - strand, within MPMX20_01883at 1977.159 kb on - strand, within MPMX20_01883at 1977.159 kb on - strand, within MPMX20_01883at 1977.269 kb on + strand, within MPMX20_01883at 1977.274 kb on + strand, within MPMX20_01883at 1977.279 kb on + strand, within MPMX20_01883at 1977.287 kb on - strandat 1977.317 kb on - strandat 1977.369 kb on - strandat 1977.427 kb on - strandat 1977.427 kb on - strandat 1977.427 kb on - strandat 1977.516 kb on - strand, within MPMX20_01884at 1977.540 kb on + strand, within MPMX20_01884at 1977.705 kb on + strand, within MPMX20_01884at 1977.705 kb on + strand, within MPMX20_01884at 1977.705 kb on + strand, within MPMX20_01884at 1977.706 kb on - strand, within MPMX20_01884at 1977.713 kb on - strand, within MPMX20_01884at 1977.713 kb on - strand, within MPMX20_01884at 1977.713 kb on - strand, within MPMX20_01884at 1977.713 kb on - strand, within MPMX20_01884at 1977.713 kb on - strand, within MPMX20_01884at 1977.718 kb on - strand, within MPMX20_01884at 1977.748 kb on - strand, within MPMX20_01884at 1977.787 kb on + strand, within MPMX20_01884at 1977.800 kb on - strand, within MPMX20_01884at 1977.805 kb on + strand, within MPMX20_01884at 1977.810 kb on + strand, within MPMX20_01884at 1977.815 kb on + strand, within MPMX20_01884at 1977.845 kb on + strand, within MPMX20_01884at 1977.852 kb on + strand, within MPMX20_01884at 1977.853 kb on - strand, within MPMX20_01884at 1977.860 kb on - strand, within MPMX20_01884at 1977.860 kb on - strand, within MPMX20_01884at 1977.860 kb on - strand, within MPMX20_01884at 1977.860 kb on - strand, within MPMX20_01884at 1977.860 kb on - strand, within MPMX20_01884at 1977.865 kb on - strand, within MPMX20_01884

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Paraburkholderia phenoluptrix CO2
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1,973,623 - MPMX20_01880 0.89 +1.0
1,973,646 + -0.7
1,973,759 + +3.0
1,973,759 + -0.4
1,973,767 - -0.5
1,973,825 + -1.5
1,973,843 + -1.0
1,973,872 - MPMX20_01881 0.13 -0.3
1,973,887 + MPMX20_01881 0.14 -0.4
1,973,887 + MPMX20_01881 0.14 +1.7
1,973,887 + MPMX20_01881 0.14 +1.4
1,973,887 + MPMX20_01881 0.14 -1.2
1,973,887 + MPMX20_01881 0.14 -0.2
1,973,887 + MPMX20_01881 0.14 -1.3
1,973,895 - MPMX20_01881 0.16 +0.1
1,973,915 + MPMX20_01881 0.18 +2.3
1,973,920 + MPMX20_01881 0.19 +0.4
1,973,923 - MPMX20_01881 0.19 -0.4
1,973,959 - MPMX20_01881 0.24 -0.9
1,974,017 - MPMX20_01881 0.32 -0.6
1,974,042 + MPMX20_01881 0.35 -0.2
1,974,047 + MPMX20_01881 0.36 +1.3
1,974,097 + MPMX20_01881 0.42 -3.0
1,974,097 + MPMX20_01881 0.42 -0.8
1,974,205 + MPMX20_01881 0.56 -0.4
1,974,205 + MPMX20_01881 0.56 -1.3
1,974,205 + MPMX20_01881 0.56 +0.9
1,974,213 - MPMX20_01881 0.57 +0.8
1,974,213 - MPMX20_01881 0.57 -0.3
1,974,213 - MPMX20_01881 0.57 -0.8
1,974,213 - MPMX20_01881 0.57 +1.0
1,974,259 + MPMX20_01881 0.64 -1.4
1,974,388 + MPMX20_01881 0.81 -0.0
1,974,512 - -1.4
1,974,519 + -0.6
1,974,522 - +0.4
1,974,606 - +4.4
1,974,666 - -1.5
1,974,756 + -1.1
1,974,756 - +0.1
1,974,757 + -1.0
1,974,764 - -0.1
1,974,764 - -2.2
1,974,768 + +0.1
1,974,776 - +0.3
1,974,776 - -1.1
1,974,794 - -0.5
1,974,812 - +0.8
1,974,903 - MPMX20_01882 0.12 +1.3
1,974,943 + MPMX20_01882 0.14 +0.9
1,974,946 - MPMX20_01882 0.14 -0.9
1,974,965 + MPMX20_01882 0.15 -0.0
1,975,037 - MPMX20_01882 0.18 -0.9
1,975,100 + MPMX20_01882 0.21 +1.3
1,975,111 + MPMX20_01882 0.22 -1.5
1,975,189 + MPMX20_01882 0.25 +2.3
1,975,214 + MPMX20_01882 0.26 +2.3
1,975,294 + MPMX20_01882 0.30 -0.7
1,975,302 - MPMX20_01882 0.30 +0.2
1,975,309 - MPMX20_01882 0.30 +0.7
1,975,344 - MPMX20_01882 0.32 -0.0
1,975,346 + MPMX20_01882 0.32 +0.1
1,975,347 + MPMX20_01882 0.32 +0.3
1,975,347 + MPMX20_01882 0.32 +7.3
1,975,365 - MPMX20_01882 0.33 -1.0
1,975,506 + MPMX20_01882 0.39 +0.4
1,975,633 - MPMX20_01882 0.45 -0.6
1,975,638 + MPMX20_01882 0.45 +0.4
1,975,658 + MPMX20_01882 0.46 -2.9
1,975,663 + MPMX20_01882 0.46 -0.8
1,975,671 - MPMX20_01882 0.47 -1.3
1,975,798 + MPMX20_01882 0.52 -0.4
1,975,798 + MPMX20_01882 0.52 -1.3
1,975,806 - MPMX20_01882 0.53 -1.5
1,975,853 - MPMX20_01882 0.55 -0.2
1,975,867 + MPMX20_01882 0.55 +0.8
1,975,875 - MPMX20_01882 0.56 +0.8
1,975,902 + MPMX20_01882 0.57 -0.6
1,975,937 + MPMX20_01882 0.58 +0.3
1,975,979 - MPMX20_01882 0.60 +2.0
1,975,979 - MPMX20_01882 0.60 +0.3
1,976,001 + MPMX20_01882 0.61 +1.3
1,976,058 - MPMX20_01882 0.64 +1.7
1,976,072 + MPMX20_01882 0.64 -1.3
1,976,072 + MPMX20_01882 0.64 +0.1
1,976,164 - MPMX20_01882 0.68 -1.0
1,976,176 + MPMX20_01882 0.69 +0.6
1,976,202 + MPMX20_01882 0.70 +5.6
1,976,210 - MPMX20_01882 0.71 -1.3
1,976,211 + MPMX20_01882 0.71 +1.8
1,976,360 - MPMX20_01882 0.77 +0.8
1,976,372 + MPMX20_01882 0.78 -0.4
1,976,372 + MPMX20_01882 0.78 +0.3
1,976,380 - MPMX20_01882 0.78 +1.2
1,976,449 + MPMX20_01882 0.81 +0.5
1,976,470 + MPMX20_01882 0.82 -0.4
1,976,475 - MPMX20_01882 0.82 -1.8
1,976,493 - MPMX20_01882 0.83 +0.7
1,976,517 + MPMX20_01882 0.84 +0.9
1,976,517 + MPMX20_01882 0.84 +0.7
1,976,517 + MPMX20_01882 0.84 +1.3
1,976,517 + MPMX20_01882 0.84 +1.9
1,976,517 + MPMX20_01882 0.84 +3.3
1,976,525 - MPMX20_01882 0.85 -0.2
1,976,557 + MPMX20_01882 0.86 +0.6
1,976,565 - MPMX20_01882 0.86 -1.2
1,976,565 - MPMX20_01882 0.86 -0.2
1,976,643 - MPMX20_01882 0.90 -0.9
1,976,733 + +3.9
1,976,768 - -0.9
1,976,804 + -0.6
1,976,812 - -0.0
1,976,864 + -0.1
1,976,913 + -1.3
1,976,913 + +0.7
1,976,921 - +1.3
1,976,921 - +1.3
1,976,996 + -0.4
1,977,048 + MPMX20_01883 0.18 -1.3
1,977,105 + MPMX20_01883 0.35 -1.1
1,977,105 + MPMX20_01883 0.35 -0.4
1,977,113 - MPMX20_01883 0.38 -1.1
1,977,113 - MPMX20_01883 0.38 -0.3
1,977,113 - MPMX20_01883 0.38 +0.3
1,977,133 - MPMX20_01883 0.44 -0.2
1,977,159 - MPMX20_01883 0.52 -1.4
1,977,159 - MPMX20_01883 0.52 -1.2
1,977,269 + MPMX20_01883 0.86 -0.1
1,977,274 + MPMX20_01883 0.87 +1.1
1,977,279 + MPMX20_01883 0.89 +2.1
1,977,287 - +0.2
1,977,317 - -1.6
1,977,369 - -0.2
1,977,427 - -0.2
1,977,427 - -1.5
1,977,427 - -0.6
1,977,516 - MPMX20_01884 0.11 -1.5
1,977,540 + MPMX20_01884 0.13 -0.5
1,977,705 + MPMX20_01884 0.25 +0.4
1,977,705 + MPMX20_01884 0.25 +0.2
1,977,705 + MPMX20_01884 0.25 -0.3
1,977,706 - MPMX20_01884 0.25 -0.5
1,977,713 - MPMX20_01884 0.25 +0.1
1,977,713 - MPMX20_01884 0.25 -0.9
1,977,713 - MPMX20_01884 0.25 -1.1
1,977,713 - MPMX20_01884 0.25 -0.1
1,977,713 - MPMX20_01884 0.25 -0.8
1,977,718 - MPMX20_01884 0.26 +1.8
1,977,748 - MPMX20_01884 0.28 -1.8
1,977,787 + MPMX20_01884 0.30 +0.7
1,977,800 - MPMX20_01884 0.31 +0.3
1,977,805 + MPMX20_01884 0.32 -0.6
1,977,810 + MPMX20_01884 0.32 -0.7
1,977,815 + MPMX20_01884 0.32 +1.3
1,977,845 + MPMX20_01884 0.35 -0.9
1,977,852 + MPMX20_01884 0.35 +0.3
1,977,853 - MPMX20_01884 0.35 +0.1
1,977,860 - MPMX20_01884 0.36 -1.2
1,977,860 - MPMX20_01884 0.36 -0.4
1,977,860 - MPMX20_01884 0.36 +0.5
1,977,860 - MPMX20_01884 0.36 -2.1
1,977,860 - MPMX20_01884 0.36 +0.2
1,977,865 - MPMX20_01884 0.36 -1.1

Or see this region's nucleotide sequence