Experiment: M9 plate, 1:1 coculture with Paraburkholderia phenoluptrix CO2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01591 and MPMX20_01592 overlap by 4 nucleotides MPMX20_01592 and MPMX20_01593 are separated by 9 nucleotides MPMX20_01593 and MPMX20_01594 overlap by 4 nucleotides MPMX20_01594 and MPMX20_01595 overlap by 8 nucleotides
MPMX20_01591: MPMX20_01591 - Aliphatic sulfonates import ATP-binding protein SsuB, at 1,680,856 to 1,681,626
_01591
MPMX20_01592: MPMX20_01592 - Putative aliphatic sulfonates transport permease protein SsuC, at 1,681,623 to 1,682,414
_01592
MPMX20_01593: MPMX20_01593 - Alkanesulfonate monooxygenase, at 1,682,424 to 1,683,569
_01593
MPMX20_01594: MPMX20_01594 - Putative aliphatic sulfonates-binding protein, at 1,683,566 to 1,684,528
_01594
MPMX20_01595: MPMX20_01595 - FMN reductase (NADPH), at 1,684,521 to 1,685,096
_01595
Position (kb)
1682
1683
1684 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5
6
7
8
9
10
11
12
13 at 1681.443 kb on + strand, within MPMX20_01591 at 1681.462 kb on + strand, within MPMX20_01591 at 1681.580 kb on + strand at 1681.588 kb on - strand at 1681.588 kb on - strand at 1681.596 kb on - strand at 1681.619 kb on - strand at 1681.837 kb on - strand, within MPMX20_01592 at 1681.838 kb on + strand, within MPMX20_01592 at 1681.893 kb on - strand, within MPMX20_01592 at 1681.928 kb on + strand, within MPMX20_01592 at 1681.928 kb on + strand, within MPMX20_01592 at 1681.928 kb on + strand, within MPMX20_01592 at 1681.930 kb on + strand, within MPMX20_01592 at 1681.936 kb on - strand, within MPMX20_01592 at 1681.936 kb on - strand, within MPMX20_01592 at 1681.936 kb on - strand, within MPMX20_01592 at 1681.936 kb on - strand, within MPMX20_01592 at 1681.936 kb on - strand, within MPMX20_01592 at 1681.953 kb on - strand, within MPMX20_01592 at 1682.007 kb on + strand, within MPMX20_01592 at 1682.008 kb on + strand, within MPMX20_01592 at 1682.009 kb on + strand, within MPMX20_01592 at 1682.015 kb on - strand, within MPMX20_01592 at 1682.016 kb on - strand, within MPMX20_01592 at 1682.016 kb on - strand, within MPMX20_01592 at 1682.016 kb on - strand, within MPMX20_01592 at 1682.157 kb on + strand, within MPMX20_01592 at 1682.243 kb on - strand, within MPMX20_01592 at 1682.276 kb on + strand, within MPMX20_01592 at 1682.285 kb on + strand, within MPMX20_01592 at 1682.300 kb on + strand, within MPMX20_01592 at 1682.362 kb on + strand at 1682.420 kb on + strand at 1682.422 kb on + strand at 1682.427 kb on + strand at 1682.430 kb on - strand at 1682.430 kb on - strand at 1682.512 kb on - strand at 1682.601 kb on + strand, within MPMX20_01593 at 1682.601 kb on + strand, within MPMX20_01593 at 1682.644 kb on - strand, within MPMX20_01593 at 1682.644 kb on - strand, within MPMX20_01593 at 1682.644 kb on - strand, within MPMX20_01593 at 1682.702 kb on + strand, within MPMX20_01593 at 1682.747 kb on + strand, within MPMX20_01593 at 1682.752 kb on + strand, within MPMX20_01593 at 1682.765 kb on - strand, within MPMX20_01593 at 1682.914 kb on - strand, within MPMX20_01593 at 1682.977 kb on + strand, within MPMX20_01593 at 1682.980 kb on - strand, within MPMX20_01593 at 1682.985 kb on - strand, within MPMX20_01593 at 1682.985 kb on - strand, within MPMX20_01593 at 1683.026 kb on + strand, within MPMX20_01593 at 1683.034 kb on - strand, within MPMX20_01593 at 1683.045 kb on + strand, within MPMX20_01593 at 1683.087 kb on - strand, within MPMX20_01593 at 1683.258 kb on - strand, within MPMX20_01593 at 1683.258 kb on - strand, within MPMX20_01593 at 1683.336 kb on - strand, within MPMX20_01593 at 1683.502 kb on - strand at 1683.519 kb on - strand at 1683.522 kb on + strand at 1683.565 kb on - strand at 1683.587 kb on + strand at 1683.599 kb on + strand at 1683.625 kb on + strand at 1683.700 kb on + strand, within MPMX20_01594 at 1683.708 kb on - strand, within MPMX20_01594 at 1683.724 kb on + strand, within MPMX20_01594 at 1683.730 kb on - strand, within MPMX20_01594 at 1683.786 kb on - strand, within MPMX20_01594 at 1683.786 kb on - strand, within MPMX20_01594 at 1683.799 kb on + strand, within MPMX20_01594 at 1683.823 kb on + strand, within MPMX20_01594 at 1683.823 kb on + strand, within MPMX20_01594 at 1683.831 kb on - strand, within MPMX20_01594 at 1683.831 kb on - strand, within MPMX20_01594 at 1683.833 kb on + strand, within MPMX20_01594 at 1683.841 kb on - strand, within MPMX20_01594 at 1683.949 kb on + strand, within MPMX20_01594 at 1683.965 kb on - strand, within MPMX20_01594 at 1683.996 kb on + strand, within MPMX20_01594 at 1684.004 kb on + strand, within MPMX20_01594 at 1684.004 kb on - strand, within MPMX20_01594 at 1684.006 kb on + strand, within MPMX20_01594 at 1684.047 kb on + strand, within MPMX20_01594 at 1684.047 kb on + strand, within MPMX20_01594 at 1684.071 kb on - strand, within MPMX20_01594 at 1684.074 kb on + strand, within MPMX20_01594 at 1684.082 kb on - strand, within MPMX20_01594 at 1684.082 kb on - strand, within MPMX20_01594 at 1684.108 kb on + strand, within MPMX20_01594 at 1684.133 kb on + strand, within MPMX20_01594 at 1684.133 kb on + strand, within MPMX20_01594 at 1684.159 kb on + strand, within MPMX20_01594 at 1684.166 kb on - strand, within MPMX20_01594 at 1684.167 kb on - strand, within MPMX20_01594 at 1684.167 kb on - strand, within MPMX20_01594 at 1684.172 kb on + strand, within MPMX20_01594 at 1684.177 kb on - strand, within MPMX20_01594 at 1684.197 kb on + strand, within MPMX20_01594 at 1684.221 kb on - strand, within MPMX20_01594 at 1684.224 kb on + strand, within MPMX20_01594 at 1684.232 kb on - strand, within MPMX20_01594 at 1684.246 kb on - strand, within MPMX20_01594 at 1684.296 kb on - strand, within MPMX20_01594 at 1684.312 kb on - strand, within MPMX20_01594 at 1684.402 kb on + strand, within MPMX20_01594 at 1684.449 kb on + strand at 1684.498 kb on - strand at 1684.537 kb on + strand at 1684.563 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Paraburkholderia phenoluptrix CO2 remove 1,681,443 + MPMX20_01591 0.76 -1.8 1,681,462 + MPMX20_01591 0.79 -0.1 1,681,580 + +0.9 1,681,588 - +1.6 1,681,588 - +0.1 1,681,596 - +0.5 1,681,619 - +1.2 1,681,837 - MPMX20_01592 0.27 -1.2 1,681,838 + MPMX20_01592 0.27 -0.0 1,681,893 - MPMX20_01592 0.34 -0.7 1,681,928 + MPMX20_01592 0.39 -1.9 1,681,928 + MPMX20_01592 0.39 -3.0 1,681,928 + MPMX20_01592 0.39 +0.6 1,681,930 + MPMX20_01592 0.39 -1.9 1,681,936 - MPMX20_01592 0.40 +0.1 1,681,936 - MPMX20_01592 0.40 -1.0 1,681,936 - MPMX20_01592 0.40 -0.3 1,681,936 - MPMX20_01592 0.40 -2.6 1,681,936 - MPMX20_01592 0.40 +0.4 1,681,953 - MPMX20_01592 0.42 -1.0 1,682,007 + MPMX20_01592 0.48 +2.4 1,682,008 + MPMX20_01592 0.49 -1.3 1,682,009 + MPMX20_01592 0.49 +3.2 1,682,015 - MPMX20_01592 0.49 +0.2 1,682,016 - MPMX20_01592 0.50 +0.6 1,682,016 - MPMX20_01592 0.50 +1.6 1,682,016 - MPMX20_01592 0.50 +0.7 1,682,157 + MPMX20_01592 0.67 +2.2 1,682,243 - MPMX20_01592 0.78 +0.7 1,682,276 + MPMX20_01592 0.82 -1.5 1,682,285 + MPMX20_01592 0.84 -1.1 1,682,300 + MPMX20_01592 0.85 -1.5 1,682,362 + -1.4 1,682,420 + -0.3 1,682,422 + -1.3 1,682,427 + +0.5 1,682,430 - -0.6 1,682,430 - -1.5 1,682,512 - +0.8 1,682,601 + MPMX20_01593 0.15 -0.4 1,682,601 + MPMX20_01593 0.15 -0.3 1,682,644 - MPMX20_01593 0.19 +0.6 1,682,644 - MPMX20_01593 0.19 -0.7 1,682,644 - MPMX20_01593 0.19 -0.3 1,682,702 + MPMX20_01593 0.24 -1.9 1,682,747 + MPMX20_01593 0.28 -0.3 1,682,752 + MPMX20_01593 0.29 -2.0 1,682,765 - MPMX20_01593 0.30 +0.6 1,682,914 - MPMX20_01593 0.43 -2.2 1,682,977 + MPMX20_01593 0.48 -0.6 1,682,980 - MPMX20_01593 0.49 +1.6 1,682,985 - MPMX20_01593 0.49 +0.6 1,682,985 - MPMX20_01593 0.49 +0.8 1,683,026 + MPMX20_01593 0.53 -2.5 1,683,034 - MPMX20_01593 0.53 +1.0 1,683,045 + MPMX20_01593 0.54 -0.3 1,683,087 - MPMX20_01593 0.58 +3.4 1,683,258 - MPMX20_01593 0.73 +1.2 1,683,258 - MPMX20_01593 0.73 -0.5 1,683,336 - MPMX20_01593 0.80 +13.6 1,683,502 - -2.4 1,683,519 - -1.3 1,683,522 + -0.2 1,683,565 - -0.4 1,683,587 + +0.0 1,683,599 + -1.0 1,683,625 + +0.4 1,683,700 + MPMX20_01594 0.14 -0.5 1,683,708 - MPMX20_01594 0.15 +0.3 1,683,724 + MPMX20_01594 0.16 +0.0 1,683,730 - MPMX20_01594 0.17 -1.0 1,683,786 - MPMX20_01594 0.23 -1.1 1,683,786 - MPMX20_01594 0.23 +1.1 1,683,799 + MPMX20_01594 0.24 -1.2 1,683,823 + MPMX20_01594 0.27 -0.6 1,683,823 + MPMX20_01594 0.27 +0.4 1,683,831 - MPMX20_01594 0.28 -1.0 1,683,831 - MPMX20_01594 0.28 -0.7 1,683,833 + MPMX20_01594 0.28 +0.2 1,683,841 - MPMX20_01594 0.29 -0.6 1,683,949 + MPMX20_01594 0.40 +1.0 1,683,965 - MPMX20_01594 0.41 +0.1 1,683,996 + MPMX20_01594 0.45 +0.7 1,684,004 + MPMX20_01594 0.45 +0.1 1,684,004 - MPMX20_01594 0.45 -1.2 1,684,006 + MPMX20_01594 0.46 +1.4 1,684,047 + MPMX20_01594 0.50 -1.0 1,684,047 + MPMX20_01594 0.50 +0.7 1,684,071 - MPMX20_01594 0.52 +0.8 1,684,074 + MPMX20_01594 0.53 +0.4 1,684,082 - MPMX20_01594 0.54 -2.7 1,684,082 - MPMX20_01594 0.54 -1.0 1,684,108 + MPMX20_01594 0.56 +0.9 1,684,133 + MPMX20_01594 0.59 +1.9 1,684,133 + MPMX20_01594 0.59 +0.0 1,684,159 + MPMX20_01594 0.62 -0.5 1,684,166 - MPMX20_01594 0.62 +0.4 1,684,167 - MPMX20_01594 0.62 +0.7 1,684,167 - MPMX20_01594 0.62 +1.2 1,684,172 + MPMX20_01594 0.63 -1.5 1,684,177 - MPMX20_01594 0.63 -0.3 1,684,197 + MPMX20_01594 0.66 +0.6 1,684,221 - MPMX20_01594 0.68 -0.3 1,684,224 + MPMX20_01594 0.68 +0.6 1,684,232 - MPMX20_01594 0.69 -0.8 1,684,246 - MPMX20_01594 0.71 +0.2 1,684,296 - MPMX20_01594 0.76 +3.2 1,684,312 - MPMX20_01594 0.77 -0.7 1,684,402 + MPMX20_01594 0.87 -2.1 1,684,449 + +0.1 1,684,498 - -0.9 1,684,537 + +1.9 1,684,563 + -0.9
Or see this region's nucleotide sequence