Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01549

Experiment: M9 plate, 1:1 coculture with Paraburkholderia phenoluptrix CO2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01548 and MPMX20_01549 overlap by 1 nucleotidesMPMX20_01549 and MPMX20_01550 are separated by 114 nucleotides MPMX20_01548: MPMX20_01548 - putative ABC transporter ATP-binding/permease protein, at 1,619,770 to 1,621,491 _01548 MPMX20_01549: MPMX20_01549 - ATP-binding/permease protein CydD, at 1,621,491 to 1,623,257 _01549 MPMX20_01550: MPMX20_01550 - Thioredoxin reductase, at 1,623,372 to 1,624,367 _01550 Position (kb) 1621 1622 1623 1624Strain fitness (log2 ratio) -1 0 1 2 3at 1620.517 kb on - strand, within MPMX20_01548at 1620.523 kb on - strand, within MPMX20_01548at 1620.576 kb on + strand, within MPMX20_01548at 1620.688 kb on + strand, within MPMX20_01548at 1620.706 kb on - strand, within MPMX20_01548at 1620.713 kb on - strand, within MPMX20_01548at 1620.773 kb on - strand, within MPMX20_01548at 1620.994 kb on - strand, within MPMX20_01548at 1620.994 kb on - strand, within MPMX20_01548at 1621.140 kb on - strand, within MPMX20_01548at 1621.177 kb on + strand, within MPMX20_01548at 1621.185 kb on - strand, within MPMX20_01548at 1621.327 kb on + strandat 1621.397 kb on - strandat 1621.429 kb on + strandat 1621.482 kb on - strandat 1621.489 kb on + strandat 1621.636 kb on - strandat 1621.689 kb on - strand, within MPMX20_01549at 1621.694 kb on + strand, within MPMX20_01549at 1621.750 kb on + strand, within MPMX20_01549at 1621.758 kb on - strand, within MPMX20_01549at 1621.780 kb on + strand, within MPMX20_01549at 1621.780 kb on + strand, within MPMX20_01549at 1621.788 kb on - strand, within MPMX20_01549at 1622.212 kb on - strand, within MPMX20_01549at 1622.212 kb on - strand, within MPMX20_01549at 1622.504 kb on + strand, within MPMX20_01549at 1622.534 kb on + strand, within MPMX20_01549at 1622.534 kb on - strand, within MPMX20_01549at 1622.540 kb on - strand, within MPMX20_01549at 1622.873 kb on + strand, within MPMX20_01549at 1622.881 kb on - strand, within MPMX20_01549at 1622.913 kb on - strand, within MPMX20_01549at 1623.053 kb on + strand, within MPMX20_01549at 1623.150 kb on - strandat 1623.223 kb on - strandat 1623.228 kb on + strandat 1623.578 kb on - strand, within MPMX20_01550at 1623.670 kb on + strand, within MPMX20_01550at 1623.791 kb on - strand, within MPMX20_01550at 1623.835 kb on - strand, within MPMX20_01550

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Paraburkholderia phenoluptrix CO2
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1,620,517 - MPMX20_01548 0.43 +3.2
1,620,523 - MPMX20_01548 0.44 +0.4
1,620,576 + MPMX20_01548 0.47 +0.9
1,620,688 + MPMX20_01548 0.53 +2.2
1,620,706 - MPMX20_01548 0.54 +3.2
1,620,713 - MPMX20_01548 0.55 +2.2
1,620,773 - MPMX20_01548 0.58 +0.6
1,620,994 - MPMX20_01548 0.71 +1.6
1,620,994 - MPMX20_01548 0.71 +1.2
1,621,140 - MPMX20_01548 0.80 -1.1
1,621,177 + MPMX20_01548 0.82 +1.2
1,621,185 - MPMX20_01548 0.82 +2.2
1,621,327 + +3.2
1,621,397 - +1.6
1,621,429 + +1.2
1,621,482 - +2.2
1,621,489 + -0.4
1,621,636 - +3.2
1,621,689 - MPMX20_01549 0.11 +3.2
1,621,694 + MPMX20_01549 0.11 +3.2
1,621,750 + MPMX20_01549 0.15 +0.9
1,621,758 - MPMX20_01549 0.15 +3.2
1,621,780 + MPMX20_01549 0.16 +1.6
1,621,780 + MPMX20_01549 0.16 +3.2
1,621,788 - MPMX20_01549 0.17 +1.2
1,622,212 - MPMX20_01549 0.41 +2.2
1,622,212 - MPMX20_01549 0.41 +2.2
1,622,504 + MPMX20_01549 0.57 +1.6
1,622,534 + MPMX20_01549 0.59 +0.6
1,622,534 - MPMX20_01549 0.59 +2.2
1,622,540 - MPMX20_01549 0.59 +1.6
1,622,873 + MPMX20_01549 0.78 +2.2
1,622,881 - MPMX20_01549 0.79 +1.2
1,622,913 - MPMX20_01549 0.80 +3.2
1,623,053 + MPMX20_01549 0.88 +3.2
1,623,150 - +0.9
1,623,223 - +1.2
1,623,228 + +0.4
1,623,578 - MPMX20_01550 0.21 +1.6
1,623,670 + MPMX20_01550 0.30 -0.3
1,623,791 - MPMX20_01550 0.42 -0.3
1,623,835 - MPMX20_01550 0.46 +1.9

Or see this region's nucleotide sequence