Experiment: M9 plate, 1:1 coculture with Paraburkholderia phenoluptrix CO2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01266 and MPMX20_01267 overlap by 4 nucleotides MPMX20_01267 and MPMX20_01268 overlap by 4 nucleotides MPMX20_01268 and MPMX20_01269 are separated by 123 nucleotides
MPMX20_01266: MPMX20_01266 - Acireductone dioxygenase, at 1,330,695 to 1,331,237
_01266
MPMX20_01267: MPMX20_01267 - Enolase-phosphatase E1, at 1,331,234 to 1,331,923
_01267
MPMX20_01268: MPMX20_01268 - Methylthioribulose-1-phosphate dehydratase, at 1,331,920 to 1,332,534
_01268
MPMX20_01269: MPMX20_01269 - Methionine aminotransferase, at 1,332,658 to 1,333,818
_01269
Position (kb)
1331
1332
1333 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 1331.148 kb on - strand, within MPMX20_01266 at 1331.182 kb on - strand, within MPMX20_01266 at 1331.200 kb on - strand at 1331.243 kb on - strand at 1331.248 kb on + strand at 1331.261 kb on - strand at 1331.272 kb on + strand at 1331.277 kb on + strand at 1331.281 kb on + strand at 1331.320 kb on + strand, within MPMX20_01267 at 1331.328 kb on - strand, within MPMX20_01267 at 1331.344 kb on + strand, within MPMX20_01267 at 1331.344 kb on + strand, within MPMX20_01267 at 1331.423 kb on + strand, within MPMX20_01267 at 1331.431 kb on - strand, within MPMX20_01267 at 1331.480 kb on + strand, within MPMX20_01267 at 1331.488 kb on - strand, within MPMX20_01267 at 1331.535 kb on + strand, within MPMX20_01267 at 1331.537 kb on + strand, within MPMX20_01267 at 1331.537 kb on + strand, within MPMX20_01267 at 1331.570 kb on + strand, within MPMX20_01267 at 1331.571 kb on - strand, within MPMX20_01267 at 1331.610 kb on + strand, within MPMX20_01267 at 1331.618 kb on - strand, within MPMX20_01267 at 1331.618 kb on - strand, within MPMX20_01267 at 1331.618 kb on - strand, within MPMX20_01267 at 1331.618 kb on - strand, within MPMX20_01267 at 1331.674 kb on + strand, within MPMX20_01267 at 1331.682 kb on - strand, within MPMX20_01267 at 1331.704 kb on - strand, within MPMX20_01267 at 1331.711 kb on + strand, within MPMX20_01267 at 1331.717 kb on - strand, within MPMX20_01267 at 1331.719 kb on - strand, within MPMX20_01267 at 1331.719 kb on - strand, within MPMX20_01267 at 1331.719 kb on - strand, within MPMX20_01267 at 1331.719 kb on - strand, within MPMX20_01267 at 1331.742 kb on - strand, within MPMX20_01267 at 1331.753 kb on - strand, within MPMX20_01267 at 1331.785 kb on - strand, within MPMX20_01267 at 1331.802 kb on + strand, within MPMX20_01267 at 1331.802 kb on + strand, within MPMX20_01267 at 1331.810 kb on - strand, within MPMX20_01267 at 1331.810 kb on - strand, within MPMX20_01267 at 1331.825 kb on - strand, within MPMX20_01267 at 1331.875 kb on + strand at 1331.919 kb on + strand at 1331.926 kb on - strand at 1331.927 kb on + strand at 1331.945 kb on - strand at 1331.945 kb on - strand at 1332.019 kb on + strand, within MPMX20_01268 at 1332.024 kb on + strand, within MPMX20_01268 at 1332.024 kb on + strand, within MPMX20_01268 at 1332.024 kb on + strand, within MPMX20_01268 at 1332.027 kb on - strand, within MPMX20_01268 at 1332.032 kb on - strand, within MPMX20_01268 at 1332.059 kb on + strand, within MPMX20_01268 at 1332.072 kb on - strand, within MPMX20_01268 at 1332.098 kb on + strand, within MPMX20_01268 at 1332.126 kb on + strand, within MPMX20_01268 at 1332.130 kb on - strand, within MPMX20_01268 at 1332.145 kb on - strand, within MPMX20_01268 at 1332.149 kb on + strand, within MPMX20_01268 at 1332.150 kb on - strand, within MPMX20_01268 at 1332.219 kb on + strand, within MPMX20_01268 at 1332.245 kb on + strand, within MPMX20_01268 at 1332.286 kb on + strand, within MPMX20_01268 at 1332.292 kb on - strand, within MPMX20_01268 at 1332.297 kb on + strand, within MPMX20_01268 at 1332.328 kb on + strand, within MPMX20_01268 at 1332.328 kb on + strand, within MPMX20_01268 at 1332.328 kb on + strand, within MPMX20_01268 at 1332.336 kb on + strand, within MPMX20_01268 at 1332.336 kb on + strand, within MPMX20_01268 at 1332.388 kb on + strand, within MPMX20_01268 at 1332.388 kb on + strand, within MPMX20_01268 at 1332.391 kb on - strand, within MPMX20_01268 at 1332.496 kb on + strand at 1332.505 kb on - strand at 1332.739 kb on + strand at 1332.739 kb on - strand at 1332.739 kb on - strand at 1332.752 kb on + strand at 1332.760 kb on - strand at 1332.816 kb on - strand, within MPMX20_01269 at 1332.816 kb on - strand, within MPMX20_01269 at 1332.871 kb on + strand, within MPMX20_01269 at 1332.879 kb on - strand, within MPMX20_01269 at 1332.888 kb on + strand, within MPMX20_01269 at 1332.911 kb on + strand, within MPMX20_01269 at 1332.947 kb on + strand, within MPMX20_01269 at 1332.947 kb on + strand, within MPMX20_01269 at 1332.947 kb on + strand, within MPMX20_01269 at 1332.955 kb on - strand, within MPMX20_01269 at 1332.990 kb on + strand, within MPMX20_01269 at 1332.993 kb on + strand, within MPMX20_01269 at 1332.998 kb on - strand, within MPMX20_01269 at 1333.043 kb on - strand, within MPMX20_01269 at 1333.059 kb on - strand, within MPMX20_01269 at 1333.059 kb on - strand, within MPMX20_01269 at 1333.071 kb on + strand, within MPMX20_01269 at 1333.079 kb on - strand, within MPMX20_01269 at 1333.079 kb on - strand, within MPMX20_01269 at 1333.096 kb on + strand, within MPMX20_01269 at 1333.129 kb on + strand, within MPMX20_01269 at 1333.129 kb on + strand, within MPMX20_01269 at 1333.161 kb on + strand, within MPMX20_01269 at 1333.169 kb on - strand, within MPMX20_01269 at 1333.171 kb on + strand, within MPMX20_01269 at 1333.179 kb on - strand, within MPMX20_01269 at 1333.186 kb on - strand, within MPMX20_01269 at 1333.259 kb on + strand, within MPMX20_01269 at 1333.267 kb on + strand, within MPMX20_01269 at 1333.267 kb on - strand, within MPMX20_01269 at 1333.286 kb on - strand, within MPMX20_01269 at 1333.286 kb on - strand, within MPMX20_01269 at 1333.305 kb on - strand, within MPMX20_01269 at 1333.305 kb on - strand, within MPMX20_01269 at 1333.305 kb on - strand, within MPMX20_01269 at 1333.312 kb on - strand, within MPMX20_01269 at 1333.390 kb on - strand, within MPMX20_01269 at 1333.390 kb on - strand, within MPMX20_01269 at 1333.416 kb on + strand, within MPMX20_01269 at 1333.421 kb on + strand, within MPMX20_01269 at 1333.421 kb on + strand, within MPMX20_01269 at 1333.421 kb on + strand, within MPMX20_01269 at 1333.426 kb on + strand, within MPMX20_01269 at 1333.426 kb on + strand, within MPMX20_01269 at 1333.429 kb on - strand, within MPMX20_01269 at 1333.429 kb on - strand, within MPMX20_01269 at 1333.429 kb on - strand, within MPMX20_01269 at 1333.429 kb on - strand, within MPMX20_01269 at 1333.429 kb on - strand, within MPMX20_01269 at 1333.429 kb on - strand, within MPMX20_01269 at 1333.431 kb on + strand, within MPMX20_01269 at 1333.438 kb on + strand, within MPMX20_01269 at 1333.439 kb on - strand, within MPMX20_01269 at 1333.439 kb on - strand, within MPMX20_01269 at 1333.491 kb on - strand, within MPMX20_01269 at 1333.508 kb on + strand, within MPMX20_01269 at 1333.528 kb on - strand, within MPMX20_01269
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Paraburkholderia phenoluptrix CO2 remove 1,331,148 - MPMX20_01266 0.83 +1.4 1,331,182 - MPMX20_01266 0.90 -1.1 1,331,200 - +0.1 1,331,243 - -1.0 1,331,248 + +2.3 1,331,261 - +1.8 1,331,272 + -0.5 1,331,277 + +0.9 1,331,281 + -0.8 1,331,320 + MPMX20_01267 0.12 -2.1 1,331,328 - MPMX20_01267 0.14 -0.2 1,331,344 + MPMX20_01267 0.16 -0.3 1,331,344 + MPMX20_01267 0.16 +0.2 1,331,423 + MPMX20_01267 0.27 +0.5 1,331,431 - MPMX20_01267 0.29 -0.7 1,331,480 + MPMX20_01267 0.36 +1.0 1,331,488 - MPMX20_01267 0.37 +1.0 1,331,535 + MPMX20_01267 0.44 -0.4 1,331,537 + MPMX20_01267 0.44 +1.4 1,331,537 + MPMX20_01267 0.44 -0.1 1,331,570 + MPMX20_01267 0.49 -0.2 1,331,571 - MPMX20_01267 0.49 -0.5 1,331,610 + MPMX20_01267 0.54 +0.0 1,331,618 - MPMX20_01267 0.56 +0.1 1,331,618 - MPMX20_01267 0.56 -0.4 1,331,618 - MPMX20_01267 0.56 -0.8 1,331,618 - MPMX20_01267 0.56 +0.4 1,331,674 + MPMX20_01267 0.64 -0.5 1,331,682 - MPMX20_01267 0.65 -0.3 1,331,704 - MPMX20_01267 0.68 +0.5 1,331,711 + MPMX20_01267 0.69 +0.7 1,331,717 - MPMX20_01267 0.70 -0.3 1,331,719 - MPMX20_01267 0.70 -0.5 1,331,719 - MPMX20_01267 0.70 -0.6 1,331,719 - MPMX20_01267 0.70 -0.6 1,331,719 - MPMX20_01267 0.70 -2.0 1,331,742 - MPMX20_01267 0.74 +0.2 1,331,753 - MPMX20_01267 0.75 +0.0 1,331,785 - MPMX20_01267 0.80 -2.7 1,331,802 + MPMX20_01267 0.82 +0.5 1,331,802 + MPMX20_01267 0.82 -1.8 1,331,810 - MPMX20_01267 0.83 -1.1 1,331,810 - MPMX20_01267 0.83 -0.3 1,331,825 - MPMX20_01267 0.86 -0.8 1,331,875 + -0.9 1,331,919 + +1.1 1,331,926 - -0.3 1,331,927 + -1.9 1,331,945 - +0.2 1,331,945 - +0.0 1,332,019 + MPMX20_01268 0.16 +1.3 1,332,024 + MPMX20_01268 0.17 +0.7 1,332,024 + MPMX20_01268 0.17 +2.8 1,332,024 + MPMX20_01268 0.17 -1.6 1,332,027 - MPMX20_01268 0.17 +0.9 1,332,032 - MPMX20_01268 0.18 +1.4 1,332,059 + MPMX20_01268 0.23 -2.6 1,332,072 - MPMX20_01268 0.25 +3.9 1,332,098 + MPMX20_01268 0.29 +0.0 1,332,126 + MPMX20_01268 0.33 +0.6 1,332,130 - MPMX20_01268 0.34 +0.4 1,332,145 - MPMX20_01268 0.37 -0.5 1,332,149 + MPMX20_01268 0.37 -0.8 1,332,150 - MPMX20_01268 0.37 -0.1 1,332,219 + MPMX20_01268 0.49 -2.2 1,332,245 + MPMX20_01268 0.53 +1.0 1,332,286 + MPMX20_01268 0.60 +0.2 1,332,292 - MPMX20_01268 0.60 +0.8 1,332,297 + MPMX20_01268 0.61 +0.1 1,332,328 + MPMX20_01268 0.66 +0.3 1,332,328 + MPMX20_01268 0.66 -0.1 1,332,328 + MPMX20_01268 0.66 +4.1 1,332,336 + MPMX20_01268 0.68 -0.2 1,332,336 + MPMX20_01268 0.68 +0.9 1,332,388 + MPMX20_01268 0.76 -0.7 1,332,388 + MPMX20_01268 0.76 +0.9 1,332,391 - MPMX20_01268 0.77 -0.3 1,332,496 + +0.4 1,332,505 - +0.9 1,332,739 + -1.0 1,332,739 - -0.3 1,332,739 - +0.1 1,332,752 + +0.9 1,332,760 - -0.1 1,332,816 - MPMX20_01269 0.14 -0.5 1,332,816 - MPMX20_01269 0.14 -0.7 1,332,871 + MPMX20_01269 0.18 +0.9 1,332,879 - MPMX20_01269 0.19 +0.2 1,332,888 + MPMX20_01269 0.20 +0.9 1,332,911 + MPMX20_01269 0.22 -0.6 1,332,947 + MPMX20_01269 0.25 -2.2 1,332,947 + MPMX20_01269 0.25 +2.4 1,332,947 + MPMX20_01269 0.25 -0.2 1,332,955 - MPMX20_01269 0.26 +1.3 1,332,990 + MPMX20_01269 0.29 -1.7 1,332,993 + MPMX20_01269 0.29 -0.0 1,332,998 - MPMX20_01269 0.29 -0.9 1,333,043 - MPMX20_01269 0.33 -1.1 1,333,059 - MPMX20_01269 0.35 +3.2 1,333,059 - MPMX20_01269 0.35 +0.0 1,333,071 + MPMX20_01269 0.36 -0.8 1,333,079 - MPMX20_01269 0.36 -0.8 1,333,079 - MPMX20_01269 0.36 -0.8 1,333,096 + MPMX20_01269 0.38 +1.6 1,333,129 + MPMX20_01269 0.41 +0.2 1,333,129 + MPMX20_01269 0.41 +0.6 1,333,161 + MPMX20_01269 0.43 +1.2 1,333,169 - MPMX20_01269 0.44 -1.1 1,333,171 + MPMX20_01269 0.44 +0.4 1,333,179 - MPMX20_01269 0.45 -1.1 1,333,186 - MPMX20_01269 0.45 -2.3 1,333,259 + MPMX20_01269 0.52 +0.0 1,333,267 + MPMX20_01269 0.52 +3.2 1,333,267 - MPMX20_01269 0.52 +0.4 1,333,286 - MPMX20_01269 0.54 +2.2 1,333,286 - MPMX20_01269 0.54 +0.4 1,333,305 - MPMX20_01269 0.56 -0.6 1,333,305 - MPMX20_01269 0.56 +1.6 1,333,305 - MPMX20_01269 0.56 -1.5 1,333,312 - MPMX20_01269 0.56 +0.9 1,333,390 - MPMX20_01269 0.63 -0.4 1,333,390 - MPMX20_01269 0.63 -2.2 1,333,416 + MPMX20_01269 0.65 -1.0 1,333,421 + MPMX20_01269 0.66 +0.0 1,333,421 + MPMX20_01269 0.66 +0.0 1,333,421 + MPMX20_01269 0.66 -1.7 1,333,426 + MPMX20_01269 0.66 +1.2 1,333,426 + MPMX20_01269 0.66 -0.3 1,333,429 - MPMX20_01269 0.66 +2.2 1,333,429 - MPMX20_01269 0.66 -1.3 1,333,429 - MPMX20_01269 0.66 -0.3 1,333,429 - MPMX20_01269 0.66 +3.2 1,333,429 - MPMX20_01269 0.66 -2.3 1,333,429 - MPMX20_01269 0.66 +1.7 1,333,431 + MPMX20_01269 0.67 -1.1 1,333,438 + MPMX20_01269 0.67 +0.9 1,333,439 - MPMX20_01269 0.67 -1.5 1,333,439 - MPMX20_01269 0.67 -1.0 1,333,491 - MPMX20_01269 0.72 -1.9 1,333,508 + MPMX20_01269 0.73 -0.9 1,333,528 - MPMX20_01269 0.75 -0.4
Or see this region's nucleotide sequence