Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01268

Experiment: M9 plate, 1:1 coculture with Paraburkholderia phenoluptrix CO2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01266 and MPMX20_01267 overlap by 4 nucleotidesMPMX20_01267 and MPMX20_01268 overlap by 4 nucleotidesMPMX20_01268 and MPMX20_01269 are separated by 123 nucleotides MPMX20_01266: MPMX20_01266 - Acireductone dioxygenase, at 1,330,695 to 1,331,237 _01266 MPMX20_01267: MPMX20_01267 - Enolase-phosphatase E1, at 1,331,234 to 1,331,923 _01267 MPMX20_01268: MPMX20_01268 - Methylthioribulose-1-phosphate dehydratase, at 1,331,920 to 1,332,534 _01268 MPMX20_01269: MPMX20_01269 - Methionine aminotransferase, at 1,332,658 to 1,333,818 _01269 Position (kb) 1331 1332 1333Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1331.148 kb on - strand, within MPMX20_01266at 1331.182 kb on - strand, within MPMX20_01266at 1331.200 kb on - strandat 1331.243 kb on - strandat 1331.248 kb on + strandat 1331.261 kb on - strandat 1331.272 kb on + strandat 1331.277 kb on + strandat 1331.281 kb on + strandat 1331.320 kb on + strand, within MPMX20_01267at 1331.328 kb on - strand, within MPMX20_01267at 1331.344 kb on + strand, within MPMX20_01267at 1331.344 kb on + strand, within MPMX20_01267at 1331.423 kb on + strand, within MPMX20_01267at 1331.431 kb on - strand, within MPMX20_01267at 1331.480 kb on + strand, within MPMX20_01267at 1331.488 kb on - strand, within MPMX20_01267at 1331.535 kb on + strand, within MPMX20_01267at 1331.537 kb on + strand, within MPMX20_01267at 1331.537 kb on + strand, within MPMX20_01267at 1331.570 kb on + strand, within MPMX20_01267at 1331.571 kb on - strand, within MPMX20_01267at 1331.610 kb on + strand, within MPMX20_01267at 1331.618 kb on - strand, within MPMX20_01267at 1331.618 kb on - strand, within MPMX20_01267at 1331.618 kb on - strand, within MPMX20_01267at 1331.618 kb on - strand, within MPMX20_01267at 1331.674 kb on + strand, within MPMX20_01267at 1331.682 kb on - strand, within MPMX20_01267at 1331.704 kb on - strand, within MPMX20_01267at 1331.711 kb on + strand, within MPMX20_01267at 1331.717 kb on - strand, within MPMX20_01267at 1331.719 kb on - strand, within MPMX20_01267at 1331.719 kb on - strand, within MPMX20_01267at 1331.719 kb on - strand, within MPMX20_01267at 1331.719 kb on - strand, within MPMX20_01267at 1331.742 kb on - strand, within MPMX20_01267at 1331.753 kb on - strand, within MPMX20_01267at 1331.785 kb on - strand, within MPMX20_01267at 1331.802 kb on + strand, within MPMX20_01267at 1331.802 kb on + strand, within MPMX20_01267at 1331.810 kb on - strand, within MPMX20_01267at 1331.810 kb on - strand, within MPMX20_01267at 1331.825 kb on - strand, within MPMX20_01267at 1331.875 kb on + strandat 1331.919 kb on + strandat 1331.926 kb on - strandat 1331.927 kb on + strandat 1331.945 kb on - strandat 1331.945 kb on - strandat 1332.019 kb on + strand, within MPMX20_01268at 1332.024 kb on + strand, within MPMX20_01268at 1332.024 kb on + strand, within MPMX20_01268at 1332.024 kb on + strand, within MPMX20_01268at 1332.027 kb on - strand, within MPMX20_01268at 1332.032 kb on - strand, within MPMX20_01268at 1332.059 kb on + strand, within MPMX20_01268at 1332.072 kb on - strand, within MPMX20_01268at 1332.098 kb on + strand, within MPMX20_01268at 1332.126 kb on + strand, within MPMX20_01268at 1332.130 kb on - strand, within MPMX20_01268at 1332.145 kb on - strand, within MPMX20_01268at 1332.149 kb on + strand, within MPMX20_01268at 1332.150 kb on - strand, within MPMX20_01268at 1332.219 kb on + strand, within MPMX20_01268at 1332.245 kb on + strand, within MPMX20_01268at 1332.286 kb on + strand, within MPMX20_01268at 1332.292 kb on - strand, within MPMX20_01268at 1332.297 kb on + strand, within MPMX20_01268at 1332.328 kb on + strand, within MPMX20_01268at 1332.328 kb on + strand, within MPMX20_01268at 1332.328 kb on + strand, within MPMX20_01268at 1332.336 kb on + strand, within MPMX20_01268at 1332.336 kb on + strand, within MPMX20_01268at 1332.388 kb on + strand, within MPMX20_01268at 1332.388 kb on + strand, within MPMX20_01268at 1332.391 kb on - strand, within MPMX20_01268at 1332.496 kb on + strandat 1332.505 kb on - strandat 1332.739 kb on + strandat 1332.739 kb on - strandat 1332.739 kb on - strandat 1332.752 kb on + strandat 1332.760 kb on - strandat 1332.816 kb on - strand, within MPMX20_01269at 1332.816 kb on - strand, within MPMX20_01269at 1332.871 kb on + strand, within MPMX20_01269at 1332.879 kb on - strand, within MPMX20_01269at 1332.888 kb on + strand, within MPMX20_01269at 1332.911 kb on + strand, within MPMX20_01269at 1332.947 kb on + strand, within MPMX20_01269at 1332.947 kb on + strand, within MPMX20_01269at 1332.947 kb on + strand, within MPMX20_01269at 1332.955 kb on - strand, within MPMX20_01269at 1332.990 kb on + strand, within MPMX20_01269at 1332.993 kb on + strand, within MPMX20_01269at 1332.998 kb on - strand, within MPMX20_01269at 1333.043 kb on - strand, within MPMX20_01269at 1333.059 kb on - strand, within MPMX20_01269at 1333.059 kb on - strand, within MPMX20_01269at 1333.071 kb on + strand, within MPMX20_01269at 1333.079 kb on - strand, within MPMX20_01269at 1333.079 kb on - strand, within MPMX20_01269at 1333.096 kb on + strand, within MPMX20_01269at 1333.129 kb on + strand, within MPMX20_01269at 1333.129 kb on + strand, within MPMX20_01269at 1333.161 kb on + strand, within MPMX20_01269at 1333.169 kb on - strand, within MPMX20_01269at 1333.171 kb on + strand, within MPMX20_01269at 1333.179 kb on - strand, within MPMX20_01269at 1333.186 kb on - strand, within MPMX20_01269at 1333.259 kb on + strand, within MPMX20_01269at 1333.267 kb on + strand, within MPMX20_01269at 1333.267 kb on - strand, within MPMX20_01269at 1333.286 kb on - strand, within MPMX20_01269at 1333.286 kb on - strand, within MPMX20_01269at 1333.305 kb on - strand, within MPMX20_01269at 1333.305 kb on - strand, within MPMX20_01269at 1333.305 kb on - strand, within MPMX20_01269at 1333.312 kb on - strand, within MPMX20_01269at 1333.390 kb on - strand, within MPMX20_01269at 1333.390 kb on - strand, within MPMX20_01269at 1333.416 kb on + strand, within MPMX20_01269at 1333.421 kb on + strand, within MPMX20_01269at 1333.421 kb on + strand, within MPMX20_01269at 1333.421 kb on + strand, within MPMX20_01269at 1333.426 kb on + strand, within MPMX20_01269at 1333.426 kb on + strand, within MPMX20_01269at 1333.429 kb on - strand, within MPMX20_01269at 1333.429 kb on - strand, within MPMX20_01269at 1333.429 kb on - strand, within MPMX20_01269at 1333.429 kb on - strand, within MPMX20_01269at 1333.429 kb on - strand, within MPMX20_01269at 1333.429 kb on - strand, within MPMX20_01269at 1333.431 kb on + strand, within MPMX20_01269at 1333.438 kb on + strand, within MPMX20_01269at 1333.439 kb on - strand, within MPMX20_01269at 1333.439 kb on - strand, within MPMX20_01269at 1333.491 kb on - strand, within MPMX20_01269at 1333.508 kb on + strand, within MPMX20_01269at 1333.528 kb on - strand, within MPMX20_01269

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Paraburkholderia phenoluptrix CO2
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1,331,148 - MPMX20_01266 0.83 +1.4
1,331,182 - MPMX20_01266 0.90 -1.1
1,331,200 - +0.1
1,331,243 - -1.0
1,331,248 + +2.3
1,331,261 - +1.8
1,331,272 + -0.5
1,331,277 + +0.9
1,331,281 + -0.8
1,331,320 + MPMX20_01267 0.12 -2.1
1,331,328 - MPMX20_01267 0.14 -0.2
1,331,344 + MPMX20_01267 0.16 -0.3
1,331,344 + MPMX20_01267 0.16 +0.2
1,331,423 + MPMX20_01267 0.27 +0.5
1,331,431 - MPMX20_01267 0.29 -0.7
1,331,480 + MPMX20_01267 0.36 +1.0
1,331,488 - MPMX20_01267 0.37 +1.0
1,331,535 + MPMX20_01267 0.44 -0.4
1,331,537 + MPMX20_01267 0.44 +1.4
1,331,537 + MPMX20_01267 0.44 -0.1
1,331,570 + MPMX20_01267 0.49 -0.2
1,331,571 - MPMX20_01267 0.49 -0.5
1,331,610 + MPMX20_01267 0.54 +0.0
1,331,618 - MPMX20_01267 0.56 +0.1
1,331,618 - MPMX20_01267 0.56 -0.4
1,331,618 - MPMX20_01267 0.56 -0.8
1,331,618 - MPMX20_01267 0.56 +0.4
1,331,674 + MPMX20_01267 0.64 -0.5
1,331,682 - MPMX20_01267 0.65 -0.3
1,331,704 - MPMX20_01267 0.68 +0.5
1,331,711 + MPMX20_01267 0.69 +0.7
1,331,717 - MPMX20_01267 0.70 -0.3
1,331,719 - MPMX20_01267 0.70 -0.5
1,331,719 - MPMX20_01267 0.70 -0.6
1,331,719 - MPMX20_01267 0.70 -0.6
1,331,719 - MPMX20_01267 0.70 -2.0
1,331,742 - MPMX20_01267 0.74 +0.2
1,331,753 - MPMX20_01267 0.75 +0.0
1,331,785 - MPMX20_01267 0.80 -2.7
1,331,802 + MPMX20_01267 0.82 +0.5
1,331,802 + MPMX20_01267 0.82 -1.8
1,331,810 - MPMX20_01267 0.83 -1.1
1,331,810 - MPMX20_01267 0.83 -0.3
1,331,825 - MPMX20_01267 0.86 -0.8
1,331,875 + -0.9
1,331,919 + +1.1
1,331,926 - -0.3
1,331,927 + -1.9
1,331,945 - +0.2
1,331,945 - +0.0
1,332,019 + MPMX20_01268 0.16 +1.3
1,332,024 + MPMX20_01268 0.17 +0.7
1,332,024 + MPMX20_01268 0.17 +2.8
1,332,024 + MPMX20_01268 0.17 -1.6
1,332,027 - MPMX20_01268 0.17 +0.9
1,332,032 - MPMX20_01268 0.18 +1.4
1,332,059 + MPMX20_01268 0.23 -2.6
1,332,072 - MPMX20_01268 0.25 +3.9
1,332,098 + MPMX20_01268 0.29 +0.0
1,332,126 + MPMX20_01268 0.33 +0.6
1,332,130 - MPMX20_01268 0.34 +0.4
1,332,145 - MPMX20_01268 0.37 -0.5
1,332,149 + MPMX20_01268 0.37 -0.8
1,332,150 - MPMX20_01268 0.37 -0.1
1,332,219 + MPMX20_01268 0.49 -2.2
1,332,245 + MPMX20_01268 0.53 +1.0
1,332,286 + MPMX20_01268 0.60 +0.2
1,332,292 - MPMX20_01268 0.60 +0.8
1,332,297 + MPMX20_01268 0.61 +0.1
1,332,328 + MPMX20_01268 0.66 +0.3
1,332,328 + MPMX20_01268 0.66 -0.1
1,332,328 + MPMX20_01268 0.66 +4.1
1,332,336 + MPMX20_01268 0.68 -0.2
1,332,336 + MPMX20_01268 0.68 +0.9
1,332,388 + MPMX20_01268 0.76 -0.7
1,332,388 + MPMX20_01268 0.76 +0.9
1,332,391 - MPMX20_01268 0.77 -0.3
1,332,496 + +0.4
1,332,505 - +0.9
1,332,739 + -1.0
1,332,739 - -0.3
1,332,739 - +0.1
1,332,752 + +0.9
1,332,760 - -0.1
1,332,816 - MPMX20_01269 0.14 -0.5
1,332,816 - MPMX20_01269 0.14 -0.7
1,332,871 + MPMX20_01269 0.18 +0.9
1,332,879 - MPMX20_01269 0.19 +0.2
1,332,888 + MPMX20_01269 0.20 +0.9
1,332,911 + MPMX20_01269 0.22 -0.6
1,332,947 + MPMX20_01269 0.25 -2.2
1,332,947 + MPMX20_01269 0.25 +2.4
1,332,947 + MPMX20_01269 0.25 -0.2
1,332,955 - MPMX20_01269 0.26 +1.3
1,332,990 + MPMX20_01269 0.29 -1.7
1,332,993 + MPMX20_01269 0.29 -0.0
1,332,998 - MPMX20_01269 0.29 -0.9
1,333,043 - MPMX20_01269 0.33 -1.1
1,333,059 - MPMX20_01269 0.35 +3.2
1,333,059 - MPMX20_01269 0.35 +0.0
1,333,071 + MPMX20_01269 0.36 -0.8
1,333,079 - MPMX20_01269 0.36 -0.8
1,333,079 - MPMX20_01269 0.36 -0.8
1,333,096 + MPMX20_01269 0.38 +1.6
1,333,129 + MPMX20_01269 0.41 +0.2
1,333,129 + MPMX20_01269 0.41 +0.6
1,333,161 + MPMX20_01269 0.43 +1.2
1,333,169 - MPMX20_01269 0.44 -1.1
1,333,171 + MPMX20_01269 0.44 +0.4
1,333,179 - MPMX20_01269 0.45 -1.1
1,333,186 - MPMX20_01269 0.45 -2.3
1,333,259 + MPMX20_01269 0.52 +0.0
1,333,267 + MPMX20_01269 0.52 +3.2
1,333,267 - MPMX20_01269 0.52 +0.4
1,333,286 - MPMX20_01269 0.54 +2.2
1,333,286 - MPMX20_01269 0.54 +0.4
1,333,305 - MPMX20_01269 0.56 -0.6
1,333,305 - MPMX20_01269 0.56 +1.6
1,333,305 - MPMX20_01269 0.56 -1.5
1,333,312 - MPMX20_01269 0.56 +0.9
1,333,390 - MPMX20_01269 0.63 -0.4
1,333,390 - MPMX20_01269 0.63 -2.2
1,333,416 + MPMX20_01269 0.65 -1.0
1,333,421 + MPMX20_01269 0.66 +0.0
1,333,421 + MPMX20_01269 0.66 +0.0
1,333,421 + MPMX20_01269 0.66 -1.7
1,333,426 + MPMX20_01269 0.66 +1.2
1,333,426 + MPMX20_01269 0.66 -0.3
1,333,429 - MPMX20_01269 0.66 +2.2
1,333,429 - MPMX20_01269 0.66 -1.3
1,333,429 - MPMX20_01269 0.66 -0.3
1,333,429 - MPMX20_01269 0.66 +3.2
1,333,429 - MPMX20_01269 0.66 -2.3
1,333,429 - MPMX20_01269 0.66 +1.7
1,333,431 + MPMX20_01269 0.67 -1.1
1,333,438 + MPMX20_01269 0.67 +0.9
1,333,439 - MPMX20_01269 0.67 -1.5
1,333,439 - MPMX20_01269 0.67 -1.0
1,333,491 - MPMX20_01269 0.72 -1.9
1,333,508 + MPMX20_01269 0.73 -0.9
1,333,528 - MPMX20_01269 0.75 -0.4

Or see this region's nucleotide sequence