Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01071

Experiment: M9 plate, 1:1 coculture with Paraburkholderia phenoluptrix CO2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01069 and MPMX20_01070 are separated by 50 nucleotidesMPMX20_01070 and MPMX20_01071 are separated by 151 nucleotidesMPMX20_01071 and MPMX20_01072 are separated by 88 nucleotides MPMX20_01069: MPMX20_01069 - Primosomal replication protein N'', at 1,127,076 to 1,127,603 _01069 MPMX20_01070: MPMX20_01070 - Inner membrane protein YbaN, at 1,127,654 to 1,128,031 _01070 MPMX20_01071: MPMX20_01071 - Adenine phosphoribosyltransferase, at 1,128,183 to 1,128,734 _01071 MPMX20_01072: MPMX20_01072 - DNA polymerase III subunit tau, at 1,128,823 to 1,130,751 _01072 Position (kb) 1128 1129Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7at 1127.351 kb on - strand, within MPMX20_01069at 1127.358 kb on - strand, within MPMX20_01069at 1127.380 kb on + strand, within MPMX20_01069at 1127.437 kb on - strand, within MPMX20_01069at 1127.555 kb on + strandat 1127.696 kb on + strand, within MPMX20_01070at 1127.696 kb on + strand, within MPMX20_01070at 1127.717 kb on + strand, within MPMX20_01070at 1127.759 kb on + strand, within MPMX20_01070at 1127.760 kb on - strand, within MPMX20_01070at 1127.794 kb on + strand, within MPMX20_01070at 1127.868 kb on + strand, within MPMX20_01070at 1127.876 kb on - strand, within MPMX20_01070at 1127.876 kb on - strand, within MPMX20_01070at 1127.971 kb on - strand, within MPMX20_01070at 1128.035 kb on - strandat 1128.093 kb on + strandat 1128.093 kb on + strandat 1128.104 kb on + strandat 1128.150 kb on + strandat 1128.152 kb on + strandat 1128.160 kb on - strandat 1128.160 kb on - strandat 1128.185 kb on + strandat 1128.203 kb on + strandat 1128.234 kb on + strandat 1128.234 kb on + strandat 1128.239 kb on + strand, within MPMX20_01071at 1128.242 kb on - strand, within MPMX20_01071at 1128.244 kb on + strand, within MPMX20_01071at 1128.250 kb on + strand, within MPMX20_01071at 1128.280 kb on - strand, within MPMX20_01071at 1128.313 kb on + strand, within MPMX20_01071at 1128.313 kb on + strand, within MPMX20_01071at 1128.321 kb on - strand, within MPMX20_01071at 1128.321 kb on - strand, within MPMX20_01071at 1128.321 kb on - strand, within MPMX20_01071at 1128.367 kb on + strand, within MPMX20_01071at 1128.368 kb on - strand, within MPMX20_01071at 1128.410 kb on + strand, within MPMX20_01071at 1128.476 kb on + strand, within MPMX20_01071at 1128.535 kb on - strand, within MPMX20_01071at 1128.646 kb on + strand, within MPMX20_01071at 1128.654 kb on - strand, within MPMX20_01071

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Paraburkholderia phenoluptrix CO2
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1,127,351 - MPMX20_01069 0.52 -1.4
1,127,358 - MPMX20_01069 0.53 -0.0
1,127,380 + MPMX20_01069 0.58 -1.0
1,127,437 - MPMX20_01069 0.68 -0.0
1,127,555 + +0.1
1,127,696 + MPMX20_01070 0.11 +3.1
1,127,696 + MPMX20_01070 0.11 -1.6
1,127,717 + MPMX20_01070 0.17 -0.5
1,127,759 + MPMX20_01070 0.28 +2.2
1,127,760 - MPMX20_01070 0.28 +1.9
1,127,794 + MPMX20_01070 0.37 -2.0
1,127,868 + MPMX20_01070 0.57 +0.8
1,127,876 - MPMX20_01070 0.59 +0.4
1,127,876 - MPMX20_01070 0.59 -1.5
1,127,971 - MPMX20_01070 0.84 -0.7
1,128,035 - +3.1
1,128,093 + +0.8
1,128,093 + -1.2
1,128,104 + +0.3
1,128,150 + -0.4
1,128,152 + -0.6
1,128,160 - -0.5
1,128,160 - +2.0
1,128,185 + -0.1
1,128,203 + +0.8
1,128,234 + -1.3
1,128,234 + +0.3
1,128,239 + MPMX20_01071 0.10 +7.4
1,128,242 - MPMX20_01071 0.11 -1.5
1,128,244 + MPMX20_01071 0.11 +3.1
1,128,250 + MPMX20_01071 0.12 +1.5
1,128,280 - MPMX20_01071 0.18 -1.9
1,128,313 + MPMX20_01071 0.24 +3.1
1,128,313 + MPMX20_01071 0.24 -1.3
1,128,321 - MPMX20_01071 0.25 +0.7
1,128,321 - MPMX20_01071 0.25 +1.8
1,128,321 - MPMX20_01071 0.25 +1.1
1,128,367 + MPMX20_01071 0.33 +1.3
1,128,368 - MPMX20_01071 0.34 -1.5
1,128,410 + MPMX20_01071 0.41 -0.3
1,128,476 + MPMX20_01071 0.53 +1.1
1,128,535 - MPMX20_01071 0.64 -1.5
1,128,646 + MPMX20_01071 0.84 +2.1
1,128,654 - MPMX20_01071 0.85 -0.6

Or see this region's nucleotide sequence