Experiment: M9 plate, 1:1 coculture with Paraburkholderia phenoluptrix CO2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_00916 and MPMX20_00917 overlap by 8 nucleotides MPMX20_00917 and MPMX20_00918 are separated by 6 nucleotides MPMX20_00918 and MPMX20_00919 are separated by 10 nucleotides
MPMX20_00916: MPMX20_00916 - Na(+)-translocating NADH-quinone reductase subunit C, at 965,682 to 966,476
_00916
MPMX20_00917: MPMX20_00917 - Na(+)-translocating NADH-quinone reductase subunit D, at 966,469 to 967,107
_00917
MPMX20_00918: MPMX20_00918 - Na(+)-translocating NADH-quinone reductase subunit E, at 967,114 to 967,710
_00918
MPMX20_00919: MPMX20_00919 - Na(+)-translocating NADH-quinone reductase subunit F, at 967,721 to 968,944
_00919
Position (kb) 967
968 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7
8 at 966.149 kb on - strand, within MPMX20_00916 at 966.149 kb on - strand, within MPMX20_00916 at 966.149 kb on - strand, within MPMX20_00916 at 966.156 kb on - strand, within MPMX20_00916 at 966.156 kb on - strand, within MPMX20_00916 at 966.187 kb on + strand, within MPMX20_00916 at 966.188 kb on - strand, within MPMX20_00916 at 966.196 kb on + strand, within MPMX20_00916 at 966.214 kb on + strand, within MPMX20_00916 at 966.226 kb on + strand, within MPMX20_00916 at 966.276 kb on + strand, within MPMX20_00916 at 966.309 kb on - strand, within MPMX20_00916 at 966.359 kb on + strand, within MPMX20_00916 at 966.385 kb on + strand, within MPMX20_00916 at 966.414 kb on + strand at 966.542 kb on - strand, within MPMX20_00917 at 966.542 kb on - strand, within MPMX20_00917 at 966.550 kb on - strand, within MPMX20_00917 at 966.557 kb on - strand, within MPMX20_00917 at 966.557 kb on - strand, within MPMX20_00917 at 966.603 kb on + strand, within MPMX20_00917 at 966.603 kb on + strand, within MPMX20_00917 at 966.611 kb on - strand, within MPMX20_00917 at 966.611 kb on - strand, within MPMX20_00917 at 966.611 kb on - strand, within MPMX20_00917 at 966.611 kb on - strand, within MPMX20_00917 at 966.611 kb on - strand, within MPMX20_00917 at 966.627 kb on + strand, within MPMX20_00917 at 966.683 kb on + strand, within MPMX20_00917 at 966.910 kb on - strand, within MPMX20_00917 at 966.910 kb on - strand, within MPMX20_00917 at 966.910 kb on - strand, within MPMX20_00917 at 966.972 kb on + strand, within MPMX20_00917 at 966.978 kb on - strand, within MPMX20_00917 at 966.978 kb on - strand, within MPMX20_00917 at 966.982 kb on + strand, within MPMX20_00917 at 967.067 kb on - strand at 967.082 kb on + strand at 967.090 kb on - strand at 967.090 kb on - strand at 967.090 kb on - strand at 967.141 kb on + strand at 967.234 kb on - strand, within MPMX20_00918 at 967.295 kb on + strand, within MPMX20_00918 at 967.296 kb on - strand, within MPMX20_00918 at 967.320 kb on + strand, within MPMX20_00918 at 967.320 kb on + strand, within MPMX20_00918 at 967.320 kb on + strand, within MPMX20_00918 at 967.391 kb on + strand, within MPMX20_00918 at 967.392 kb on - strand, within MPMX20_00918 at 967.428 kb on + strand, within MPMX20_00918 at 967.628 kb on - strand, within MPMX20_00918 at 967.637 kb on + strand, within MPMX20_00918 at 967.637 kb on + strand, within MPMX20_00918 at 967.637 kb on + strand, within MPMX20_00918 at 967.645 kb on - strand, within MPMX20_00918 at 967.656 kb on - strand at 967.704 kb on + strand at 967.712 kb on - strand at 967.746 kb on + strand at 967.778 kb on - strand at 967.926 kb on + strand, within MPMX20_00919 at 967.949 kb on - strand, within MPMX20_00919 at 967.975 kb on + strand, within MPMX20_00919 at 968.027 kb on + strand, within MPMX20_00919 at 968.032 kb on + strand, within MPMX20_00919 at 968.039 kb on + strand, within MPMX20_00919 at 968.171 kb on - strand, within MPMX20_00919 at 968.208 kb on - strand, within MPMX20_00919 at 968.258 kb on + strand, within MPMX20_00919 at 968.278 kb on + strand, within MPMX20_00919 at 968.286 kb on - strand, within MPMX20_00919 at 968.372 kb on + strand, within MPMX20_00919 at 968.372 kb on + strand, within MPMX20_00919 at 968.372 kb on + strand, within MPMX20_00919 at 968.422 kb on + strand, within MPMX20_00919 at 968.504 kb on - strand, within MPMX20_00919 at 968.602 kb on + strand, within MPMX20_00919 at 968.646 kb on + strand, within MPMX20_00919
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Paraburkholderia phenoluptrix CO2 remove 966,149 - MPMX20_00916 0.59 +0.5 966,149 - MPMX20_00916 0.59 -0.4 966,149 - MPMX20_00916 0.59 +1.0 966,156 - MPMX20_00916 0.60 -0.8 966,156 - MPMX20_00916 0.60 +0.1 966,187 + MPMX20_00916 0.64 +0.5 966,188 - MPMX20_00916 0.64 -1.6 966,196 + MPMX20_00916 0.65 -2.4 966,214 + MPMX20_00916 0.67 -0.2 966,226 + MPMX20_00916 0.68 -2.3 966,276 + MPMX20_00916 0.75 -2.1 966,309 - MPMX20_00916 0.79 +0.9 966,359 + MPMX20_00916 0.85 -0.3 966,385 + MPMX20_00916 0.88 +0.5 966,414 + -0.4 966,542 - MPMX20_00917 0.11 +0.5 966,542 - MPMX20_00917 0.11 -0.7 966,550 - MPMX20_00917 0.13 -0.0 966,557 - MPMX20_00917 0.14 +0.1 966,557 - MPMX20_00917 0.14 +1.8 966,603 + MPMX20_00917 0.21 -0.1 966,603 + MPMX20_00917 0.21 -1.1 966,611 - MPMX20_00917 0.22 +0.1 966,611 - MPMX20_00917 0.22 -0.4 966,611 - MPMX20_00917 0.22 +0.4 966,611 - MPMX20_00917 0.22 -0.6 966,611 - MPMX20_00917 0.22 -0.3 966,627 + MPMX20_00917 0.25 -0.1 966,683 + MPMX20_00917 0.33 +0.5 966,910 - MPMX20_00917 0.69 -0.6 966,910 - MPMX20_00917 0.69 +0.7 966,910 - MPMX20_00917 0.69 +0.5 966,972 + MPMX20_00917 0.79 -0.7 966,978 - MPMX20_00917 0.80 +0.3 966,978 - MPMX20_00917 0.80 -2.1 966,982 + MPMX20_00917 0.80 -2.0 967,067 - +1.5 967,082 + -1.5 967,090 - +3.5 967,090 - +0.5 967,090 - +1.6 967,141 + +0.4 967,234 - MPMX20_00918 0.20 -1.7 967,295 + MPMX20_00918 0.30 +3.1 967,296 - MPMX20_00918 0.30 +7.9 967,320 + MPMX20_00918 0.35 -0.4 967,320 + MPMX20_00918 0.35 -0.5 967,320 + MPMX20_00918 0.35 -1.1 967,391 + MPMX20_00918 0.46 +0.5 967,392 - MPMX20_00918 0.47 -1.0 967,428 + MPMX20_00918 0.53 -0.1 967,628 - MPMX20_00918 0.86 +1.1 967,637 + MPMX20_00918 0.88 -0.4 967,637 + MPMX20_00918 0.88 -0.2 967,637 + MPMX20_00918 0.88 -0.4 967,645 - MPMX20_00918 0.89 +0.9 967,656 - -1.8 967,704 + +0.0 967,712 - -1.5 967,746 + +0.6 967,778 - -0.9 967,926 + MPMX20_00919 0.17 +2.1 967,949 - MPMX20_00919 0.19 +2.1 967,975 + MPMX20_00919 0.21 -2.0 968,027 + MPMX20_00919 0.25 +1.5 968,032 + MPMX20_00919 0.25 -0.7 968,039 + MPMX20_00919 0.26 -1.9 968,171 - MPMX20_00919 0.37 -0.5 968,208 - MPMX20_00919 0.40 +0.1 968,258 + MPMX20_00919 0.44 -0.8 968,278 + MPMX20_00919 0.46 +0.3 968,286 - MPMX20_00919 0.46 -0.6 968,372 + MPMX20_00919 0.53 -0.7 968,372 + MPMX20_00919 0.53 +1.3 968,372 + MPMX20_00919 0.53 +3.1 968,422 + MPMX20_00919 0.57 -0.1 968,504 - MPMX20_00919 0.64 +1.5 968,602 + MPMX20_00919 0.72 -1.4 968,646 + MPMX20_00919 0.76 -1.9
Or see this region's nucleotide sequence