Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00819

Experiment: M9 plate, 1:1 coculture with Paraburkholderia phenoluptrix CO2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00818 and MPMX20_00819 are separated by 195 nucleotidesMPMX20_00819 and MPMX20_00820 are separated by 101 nucleotidesMPMX20_00820 and MPMX20_00821 are separated by 107 nucleotides MPMX20_00818: MPMX20_00818 - Quinoprotein glucose dehydrogenase, at 860,453 to 862,843 _00818 MPMX20_00819: MPMX20_00819 - Hypoxanthine phosphoribosyltransferase, at 863,039 to 863,587 _00819 MPMX20_00820: MPMX20_00820 - Carbonic anhydrase 2, at 863,689 to 864,351 _00820 MPMX20_00821: MPMX20_00821 - putative ABC transporter ATP-binding protein YadG, at 864,459 to 865,385 _00821 Position (kb) 863 864Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6at 862.085 kb on - strand, within MPMX20_00818at 862.108 kb on + strand, within MPMX20_00818at 862.257 kb on + strand, within MPMX20_00818at 862.265 kb on - strand, within MPMX20_00818at 862.275 kb on - strand, within MPMX20_00818at 862.281 kb on + strand, within MPMX20_00818at 862.299 kb on - strand, within MPMX20_00818at 862.310 kb on - strand, within MPMX20_00818at 862.328 kb on + strand, within MPMX20_00818at 862.343 kb on + strand, within MPMX20_00818at 862.346 kb on - strand, within MPMX20_00818at 862.391 kb on - strand, within MPMX20_00818at 862.472 kb on - strand, within MPMX20_00818at 862.584 kb on - strand, within MPMX20_00818at 862.621 kb on - strandat 862.621 kb on - strandat 862.621 kb on - strandat 862.628 kb on + strandat 862.628 kb on + strandat 862.636 kb on - strandat 862.636 kb on - strandat 862.636 kb on - strandat 862.638 kb on + strandat 862.638 kb on + strandat 862.673 kb on + strandat 862.693 kb on + strandat 862.713 kb on + strandat 862.787 kb on + strandat 862.795 kb on + strandat 862.808 kb on + strandat 862.857 kb on - strandat 862.945 kb on + strandat 862.947 kb on - strandat 862.947 kb on - strandat 862.950 kb on + strandat 862.953 kb on - strandat 862.958 kb on - strandat 862.973 kb on + strandat 862.997 kb on + strandat 863.005 kb on - strandat 863.196 kb on + strand, within MPMX20_00819at 863.196 kb on + strand, within MPMX20_00819at 863.201 kb on + strand, within MPMX20_00819at 863.204 kb on - strand, within MPMX20_00819at 863.204 kb on - strand, within MPMX20_00819at 863.204 kb on - strand, within MPMX20_00819at 863.216 kb on + strand, within MPMX20_00819at 863.219 kb on + strand, within MPMX20_00819at 863.224 kb on - strand, within MPMX20_00819at 863.260 kb on + strand, within MPMX20_00819at 863.374 kb on + strand, within MPMX20_00819at 863.432 kb on - strand, within MPMX20_00819at 863.445 kb on - strand, within MPMX20_00819at 863.488 kb on + strand, within MPMX20_00819at 863.565 kb on + strandat 863.565 kb on + strandat 863.588 kb on + strandat 863.588 kb on + strandat 863.620 kb on - strandat 863.620 kb on - strandat 863.670 kb on - strandat 863.699 kb on - strandat 863.735 kb on + strandat 863.775 kb on + strand, within MPMX20_00820at 863.775 kb on + strand, within MPMX20_00820at 863.815 kb on - strand, within MPMX20_00820at 863.824 kb on + strand, within MPMX20_00820at 863.826 kb on - strand, within MPMX20_00820at 863.901 kb on + strand, within MPMX20_00820at 863.952 kb on + strand, within MPMX20_00820at 863.964 kb on + strand, within MPMX20_00820at 863.998 kb on + strand, within MPMX20_00820at 864.006 kb on - strand, within MPMX20_00820at 864.101 kb on - strand, within MPMX20_00820at 864.194 kb on + strand, within MPMX20_00820at 864.204 kb on + strand, within MPMX20_00820at 864.236 kb on - strand, within MPMX20_00820at 864.290 kb on + strandat 864.294 kb on - strandat 864.333 kb on + strandat 864.341 kb on - strandat 864.345 kb on + strandat 864.371 kb on - strandat 864.372 kb on - strandat 864.391 kb on + strandat 864.391 kb on + strandat 864.399 kb on - strandat 864.399 kb on - strandat 864.425 kb on - strandat 864.450 kb on + strandat 864.475 kb on + strandat 864.475 kb on + strandat 864.483 kb on - strandat 864.483 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Paraburkholderia phenoluptrix CO2
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862,085 - MPMX20_00818 0.68 -0.8
862,108 + MPMX20_00818 0.69 -1.5
862,257 + MPMX20_00818 0.75 -0.6
862,265 - MPMX20_00818 0.76 +0.9
862,275 - MPMX20_00818 0.76 -1.0
862,281 + MPMX20_00818 0.76 -0.3
862,299 - MPMX20_00818 0.77 +3.1
862,310 - MPMX20_00818 0.78 -0.0
862,328 + MPMX20_00818 0.78 +0.8
862,343 + MPMX20_00818 0.79 -0.9
862,346 - MPMX20_00818 0.79 -0.7
862,391 - MPMX20_00818 0.81 +0.3
862,472 - MPMX20_00818 0.84 -0.8
862,584 - MPMX20_00818 0.89 +0.3
862,621 - -1.4
862,621 - +1.3
862,621 - -0.1
862,628 + +1.1
862,628 + -3.5
862,636 - -1.3
862,636 - +1.0
862,636 - -1.8
862,638 + +1.5
862,638 + -1.9
862,673 + -1.2
862,693 + +2.1
862,713 + -0.5
862,787 + -1.8
862,795 + -0.2
862,808 + -0.4
862,857 - +0.2
862,945 + +0.5
862,947 - +0.4
862,947 - +0.5
862,950 + -0.1
862,953 - -0.8
862,958 - +2.1
862,973 + -0.6
862,997 + -0.6
863,005 - -1.0
863,196 + MPMX20_00819 0.29 -0.5
863,196 + MPMX20_00819 0.29 -2.1
863,201 + MPMX20_00819 0.30 +3.1
863,204 - MPMX20_00819 0.30 -1.7
863,204 - MPMX20_00819 0.30 +1.1
863,204 - MPMX20_00819 0.30 -0.9
863,216 + MPMX20_00819 0.32 -1.8
863,219 + MPMX20_00819 0.33 +0.8
863,224 - MPMX20_00819 0.34 +6.1
863,260 + MPMX20_00819 0.40 -1.8
863,374 + MPMX20_00819 0.61 -2.4
863,432 - MPMX20_00819 0.72 +1.1
863,445 - MPMX20_00819 0.74 -0.4
863,488 + MPMX20_00819 0.82 -0.7
863,565 + -1.6
863,565 + +0.3
863,588 + -0.4
863,588 + -0.5
863,620 - -0.6
863,620 - -1.5
863,670 - +2.3
863,699 - -0.3
863,735 + -1.4
863,775 + MPMX20_00820 0.13 -0.5
863,775 + MPMX20_00820 0.13 -0.6
863,815 - MPMX20_00820 0.19 -1.5
863,824 + MPMX20_00820 0.20 -0.5
863,826 - MPMX20_00820 0.21 -0.1
863,901 + MPMX20_00820 0.32 -0.8
863,952 + MPMX20_00820 0.40 -2.1
863,964 + MPMX20_00820 0.41 +0.6
863,998 + MPMX20_00820 0.47 -0.0
864,006 - MPMX20_00820 0.48 -1.1
864,101 - MPMX20_00820 0.62 -2.5
864,194 + MPMX20_00820 0.76 -0.5
864,204 + MPMX20_00820 0.78 -1.2
864,236 - MPMX20_00820 0.83 +0.0
864,290 + -2.3
864,294 - -0.1
864,333 + +0.8
864,341 - +4.7
864,345 + -1.6
864,371 - -0.5
864,372 - -0.2
864,391 + -0.2
864,391 + +0.6
864,399 - +2.3
864,399 - +0.8
864,425 - -0.6
864,450 + +1.5
864,475 + -1.9
864,475 + +0.8
864,483 - +0.1
864,483 - -2.2

Or see this region's nucleotide sequence