Experiment: M9 plate, 1:1 coculture with Paraburkholderia phenoluptrix CO2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_00761 and MPMX20_00762 overlap by 25 nucleotides MPMX20_00762 and MPMX20_00763 are separated by 168 nucleotides
MPMX20_00761: MPMX20_00761 - hypothetical protein, at 791,750 to 793,360
_00761
MPMX20_00762: MPMX20_00762 - Thiamine-binding periplasmic protein, at 793,336 to 794,319
_00762
MPMX20_00763: MPMX20_00763 - HTH-type transcriptional regulator SgrR, at 794,488 to 796,143
_00763
Position (kb) 793
794
795 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7
8
9
10 at 792.402 kb on - strand, within MPMX20_00761 at 792.423 kb on - strand, within MPMX20_00761 at 792.474 kb on - strand, within MPMX20_00761 at 792.485 kb on - strand, within MPMX20_00761 at 792.487 kb on + strand, within MPMX20_00761 at 792.507 kb on + strand, within MPMX20_00761 at 792.512 kb on + strand, within MPMX20_00761 at 792.581 kb on + strand, within MPMX20_00761 at 792.586 kb on + strand, within MPMX20_00761 at 792.586 kb on + strand, within MPMX20_00761 at 792.608 kb on + strand, within MPMX20_00761 at 792.618 kb on + strand, within MPMX20_00761 at 792.628 kb on + strand, within MPMX20_00761 at 792.687 kb on + strand, within MPMX20_00761 at 792.687 kb on - strand, within MPMX20_00761 at 792.752 kb on + strand, within MPMX20_00761 at 792.752 kb on + strand, within MPMX20_00761 at 792.946 kb on - strand, within MPMX20_00761 at 792.968 kb on + strand, within MPMX20_00761 at 792.976 kb on - strand, within MPMX20_00761 at 793.157 kb on - strand, within MPMX20_00761 at 793.455 kb on + strand, within MPMX20_00762 at 793.463 kb on - strand, within MPMX20_00762 at 793.463 kb on - strand, within MPMX20_00762 at 793.465 kb on + strand, within MPMX20_00762 at 793.474 kb on - strand, within MPMX20_00762 at 793.499 kb on + strand, within MPMX20_00762 at 793.681 kb on - strand, within MPMX20_00762 at 793.686 kb on - strand, within MPMX20_00762 at 793.686 kb on - strand, within MPMX20_00762 at 793.782 kb on - strand, within MPMX20_00762 at 793.821 kb on + strand, within MPMX20_00762 at 793.821 kb on + strand, within MPMX20_00762 at 793.821 kb on + strand, within MPMX20_00762 at 793.829 kb on - strand, within MPMX20_00762 at 793.965 kb on + strand, within MPMX20_00762 at 793.995 kb on - strand, within MPMX20_00762 at 794.054 kb on + strand, within MPMX20_00762 at 794.065 kb on + strand, within MPMX20_00762 at 794.066 kb on + strand, within MPMX20_00762 at 794.074 kb on - strand, within MPMX20_00762 at 794.101 kb on - strand, within MPMX20_00762 at 794.101 kb on - strand, within MPMX20_00762 at 794.131 kb on - strand, within MPMX20_00762 at 794.133 kb on - strand, within MPMX20_00762 at 794.179 kb on - strand, within MPMX20_00762 at 794.242 kb on + strand at 794.242 kb on + strand at 794.243 kb on + strand at 794.326 kb on + strand at 794.326 kb on + strand at 794.326 kb on + strand at 794.334 kb on - strand at 794.334 kb on - strand at 794.370 kb on - strand at 794.388 kb on - strand at 794.404 kb on + strand at 794.412 kb on - strand at 794.416 kb on + strand at 794.421 kb on + strand at 794.421 kb on + strand at 794.421 kb on + strand at 794.456 kb on + strand at 794.484 kb on + strand at 794.536 kb on - strand at 794.571 kb on + strand at 794.604 kb on - strand at 794.611 kb on + strand at 794.642 kb on - strand at 794.644 kb on + strand at 794.668 kb on + strand, within MPMX20_00763 at 794.692 kb on + strand, within MPMX20_00763 at 794.710 kb on - strand, within MPMX20_00763 at 794.717 kb on + strand, within MPMX20_00763 at 794.717 kb on + strand, within MPMX20_00763 at 794.732 kb on - strand, within MPMX20_00763 at 794.733 kb on + strand, within MPMX20_00763 at 794.733 kb on + strand, within MPMX20_00763 at 794.733 kb on + strand, within MPMX20_00763 at 794.733 kb on + strand, within MPMX20_00763 at 794.733 kb on + strand, within MPMX20_00763 at 794.741 kb on - strand, within MPMX20_00763 at 794.741 kb on - strand, within MPMX20_00763 at 794.753 kb on - strand, within MPMX20_00763 at 794.763 kb on + strand, within MPMX20_00763 at 794.828 kb on - strand, within MPMX20_00763 at 794.855 kb on - strand, within MPMX20_00763 at 794.909 kb on - strand, within MPMX20_00763 at 794.936 kb on - strand, within MPMX20_00763 at 794.937 kb on + strand, within MPMX20_00763 at 795.020 kb on + strand, within MPMX20_00763 at 795.028 kb on - strand, within MPMX20_00763 at 795.098 kb on - strand, within MPMX20_00763 at 795.098 kb on - strand, within MPMX20_00763 at 795.111 kb on + strand, within MPMX20_00763 at 795.111 kb on + strand, within MPMX20_00763 at 795.111 kb on + strand, within MPMX20_00763 at 795.111 kb on + strand, within MPMX20_00763 at 795.119 kb on - strand, within MPMX20_00763 at 795.119 kb on - strand, within MPMX20_00763 at 795.129 kb on - strand, within MPMX20_00763 at 795.180 kb on + strand, within MPMX20_00763 at 795.188 kb on - strand, within MPMX20_00763 at 795.215 kb on + strand, within MPMX20_00763 at 795.221 kb on - strand, within MPMX20_00763 at 795.236 kb on + strand, within MPMX20_00763
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Paraburkholderia phenoluptrix CO2 remove 792,402 - MPMX20_00761 0.40 -0.2 792,423 - MPMX20_00761 0.42 -0.0 792,474 - MPMX20_00761 0.45 -2.2 792,485 - MPMX20_00761 0.46 +2.1 792,487 + MPMX20_00761 0.46 +1.1 792,507 + MPMX20_00761 0.47 +1.1 792,512 + MPMX20_00761 0.47 -1.5 792,581 + MPMX20_00761 0.52 -0.2 792,586 + MPMX20_00761 0.52 +1.5 792,586 + MPMX20_00761 0.52 -1.1 792,608 + MPMX20_00761 0.53 -0.5 792,618 + MPMX20_00761 0.54 +1.5 792,628 + MPMX20_00761 0.55 -0.8 792,687 + MPMX20_00761 0.58 +0.3 792,687 - MPMX20_00761 0.58 -2.3 792,752 + MPMX20_00761 0.62 -0.0 792,752 + MPMX20_00761 0.62 +2.2 792,946 - MPMX20_00761 0.74 +1.5 792,968 + MPMX20_00761 0.76 +1.5 792,976 - MPMX20_00761 0.76 +0.3 793,157 - MPMX20_00761 0.87 -0.2 793,455 + MPMX20_00762 0.12 -1.8 793,463 - MPMX20_00762 0.13 +9.9 793,463 - MPMX20_00762 0.13 -0.7 793,465 + MPMX20_00762 0.13 -1.0 793,474 - MPMX20_00762 0.14 -1.9 793,499 + MPMX20_00762 0.17 -0.5 793,681 - MPMX20_00762 0.35 -1.1 793,686 - MPMX20_00762 0.36 -0.7 793,686 - MPMX20_00762 0.36 +2.7 793,782 - MPMX20_00762 0.45 +0.1 793,821 + MPMX20_00762 0.49 -0.5 793,821 + MPMX20_00762 0.49 +1.9 793,821 + MPMX20_00762 0.49 +0.3 793,829 - MPMX20_00762 0.50 -1.9 793,965 + MPMX20_00762 0.64 -0.8 793,995 - MPMX20_00762 0.67 +0.7 794,054 + MPMX20_00762 0.73 -0.3 794,065 + MPMX20_00762 0.74 +1.0 794,066 + MPMX20_00762 0.74 -0.0 794,074 - MPMX20_00762 0.75 -0.0 794,101 - MPMX20_00762 0.78 -0.6 794,101 - MPMX20_00762 0.78 +1.1 794,131 - MPMX20_00762 0.81 -1.9 794,133 - MPMX20_00762 0.81 +0.8 794,179 - MPMX20_00762 0.86 -0.2 794,242 + +0.8 794,242 + -1.0 794,243 + +0.0 794,326 + +0.3 794,326 + -1.1 794,326 + +2.1 794,334 - +0.4 794,334 - -1.0 794,370 - -0.4 794,388 - +2.1 794,404 + -1.9 794,412 - -2.0 794,416 + -0.9 794,421 + -0.2 794,421 + +1.0 794,421 + -1.9 794,456 + -1.5 794,484 + -0.3 794,536 - -0.5 794,571 + +1.3 794,604 - +2.1 794,611 + -1.0 794,642 - +1.5 794,644 + +0.8 794,668 + MPMX20_00763 0.11 -0.0 794,692 + MPMX20_00763 0.12 +1.1 794,710 - MPMX20_00763 0.13 -0.4 794,717 + MPMX20_00763 0.14 +3.9 794,717 + MPMX20_00763 0.14 -1.3 794,732 - MPMX20_00763 0.15 +0.4 794,733 + MPMX20_00763 0.15 -0.8 794,733 + MPMX20_00763 0.15 +0.7 794,733 + MPMX20_00763 0.15 -0.2 794,733 + MPMX20_00763 0.15 -1.0 794,733 + MPMX20_00763 0.15 -0.3 794,741 - MPMX20_00763 0.15 -0.8 794,741 - MPMX20_00763 0.15 -0.5 794,753 - MPMX20_00763 0.16 -0.9 794,763 + MPMX20_00763 0.17 -1.3 794,828 - MPMX20_00763 0.21 -1.3 794,855 - MPMX20_00763 0.22 -0.0 794,909 - MPMX20_00763 0.25 -0.6 794,936 - MPMX20_00763 0.27 -0.5 794,937 + MPMX20_00763 0.27 -0.4 795,020 + MPMX20_00763 0.32 -1.0 795,028 - MPMX20_00763 0.33 +0.5 795,098 - MPMX20_00763 0.37 -2.9 795,098 - MPMX20_00763 0.37 +2.4 795,111 + MPMX20_00763 0.38 -2.8 795,111 + MPMX20_00763 0.38 -0.9 795,111 + MPMX20_00763 0.38 -0.0 795,111 + MPMX20_00763 0.38 +2.1 795,119 - MPMX20_00763 0.38 -1.7 795,119 - MPMX20_00763 0.38 -0.9 795,129 - MPMX20_00763 0.39 -0.0 795,180 + MPMX20_00763 0.42 +2.1 795,188 - MPMX20_00763 0.42 -1.3 795,215 + MPMX20_00763 0.44 -0.4 795,221 - MPMX20_00763 0.44 -0.7 795,236 + MPMX20_00763 0.45 -0.3
Or see this region's nucleotide sequence