Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00723

Experiment: M9 plate, 1:1 coculture with Paraburkholderia phenoluptrix CO2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00722 and MPMX20_00723 are separated by 57 nucleotidesMPMX20_00723 and MPMX20_00724 are separated by 59 nucleotidesMPMX20_00724 and MPMX20_00725 are separated by 328 nucleotides MPMX20_00722: MPMX20_00722 - Na(+)/H(+) antiporter NhaA, at 746,166 to 747,341 _00722 MPMX20_00723: MPMX20_00723 - Transcriptional activator protein NhaR, at 747,399 to 748,298 _00723 MPMX20_00724: MPMX20_00724 - 30S ribosomal protein S20, at 748,358 to 748,621 _00724 MPMX20_00725: MPMX20_00725 - Bifunctional riboflavin kinase/FMN adenylyltransferase, at 748,950 to 749,888 _00725 Position (kb) 747 748 749Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7 8 9 10at 746.399 kb on + strand, within MPMX20_00722at 746.587 kb on - strand, within MPMX20_00722at 746.684 kb on + strand, within MPMX20_00722at 746.684 kb on + strand, within MPMX20_00722at 746.684 kb on + strand, within MPMX20_00722at 746.684 kb on + strand, within MPMX20_00722at 746.684 kb on + strand, within MPMX20_00722at 746.684 kb on + strand, within MPMX20_00722at 746.685 kb on + strand, within MPMX20_00722at 746.692 kb on - strand, within MPMX20_00722at 746.692 kb on - strand, within MPMX20_00722at 746.692 kb on - strand, within MPMX20_00722at 746.800 kb on + strand, within MPMX20_00722at 746.923 kb on - strand, within MPMX20_00722at 746.998 kb on + strand, within MPMX20_00722at 746.998 kb on + strand, within MPMX20_00722at 747.004 kb on + strand, within MPMX20_00722at 747.004 kb on + strand, within MPMX20_00722at 747.006 kb on - strand, within MPMX20_00722at 747.012 kb on - strand, within MPMX20_00722at 747.061 kb on - strand, within MPMX20_00722at 747.061 kb on - strand, within MPMX20_00722at 747.061 kb on - strand, within MPMX20_00722at 747.073 kb on + strand, within MPMX20_00722at 747.073 kb on + strand, within MPMX20_00722at 747.073 kb on + strand, within MPMX20_00722at 747.081 kb on - strand, within MPMX20_00722at 747.081 kb on - strand, within MPMX20_00722at 747.209 kb on + strand, within MPMX20_00722at 747.226 kb on + strandat 747.226 kb on + strandat 747.234 kb on - strandat 747.291 kb on + strandat 747.291 kb on + strandat 747.330 kb on + strandat 747.442 kb on + strandat 747.450 kb on - strandat 747.450 kb on - strandat 747.497 kb on + strand, within MPMX20_00723at 747.497 kb on + strand, within MPMX20_00723at 747.505 kb on - strand, within MPMX20_00723at 747.615 kb on - strand, within MPMX20_00723at 747.620 kb on - strand, within MPMX20_00723at 747.633 kb on - strand, within MPMX20_00723at 747.633 kb on - strand, within MPMX20_00723at 747.638 kb on - strand, within MPMX20_00723at 747.680 kb on - strand, within MPMX20_00723at 747.754 kb on - strand, within MPMX20_00723at 747.770 kb on + strand, within MPMX20_00723at 747.797 kb on - strand, within MPMX20_00723at 747.864 kb on - strand, within MPMX20_00723at 747.874 kb on - strand, within MPMX20_00723at 747.955 kb on + strand, within MPMX20_00723at 747.955 kb on + strand, within MPMX20_00723at 747.955 kb on + strand, within MPMX20_00723at 747.963 kb on - strand, within MPMX20_00723at 747.963 kb on - strand, within MPMX20_00723at 747.963 kb on - strand, within MPMX20_00723at 747.963 kb on - strand, within MPMX20_00723at 747.963 kb on - strand, within MPMX20_00723at 747.963 kb on - strand, within MPMX20_00723at 747.963 kb on - strand, within MPMX20_00723at 748.003 kb on + strand, within MPMX20_00723at 748.011 kb on + strand, within MPMX20_00723at 748.019 kb on - strand, within MPMX20_00723at 748.079 kb on + strand, within MPMX20_00723at 748.079 kb on + strand, within MPMX20_00723at 748.079 kb on + strand, within MPMX20_00723at 748.095 kb on - strand, within MPMX20_00723at 748.255 kb on - strandat 748.277 kb on + strandat 748.833 kb on + strandat 748.856 kb on + strandat 748.856 kb on - strandat 748.864 kb on - strandat 748.895 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Paraburkholderia phenoluptrix CO2
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746,399 + MPMX20_00722 0.20 -0.5
746,587 - MPMX20_00722 0.36 -1.8
746,684 + MPMX20_00722 0.44 -0.7
746,684 + MPMX20_00722 0.44 -1.6
746,684 + MPMX20_00722 0.44 -1.0
746,684 + MPMX20_00722 0.44 +0.5
746,684 + MPMX20_00722 0.44 -1.6
746,684 + MPMX20_00722 0.44 -1.5
746,685 + MPMX20_00722 0.44 -2.2
746,692 - MPMX20_00722 0.45 +1.5
746,692 - MPMX20_00722 0.45 -2.4
746,692 - MPMX20_00722 0.45 +0.5
746,800 + MPMX20_00722 0.54 +0.8
746,923 - MPMX20_00722 0.64 +0.5
746,998 + MPMX20_00722 0.71 +0.9
746,998 + MPMX20_00722 0.71 -1.1
747,004 + MPMX20_00722 0.71 -0.8
747,004 + MPMX20_00722 0.71 -0.7
747,006 - MPMX20_00722 0.71 -2.0
747,012 - MPMX20_00722 0.72 -0.5
747,061 - MPMX20_00722 0.76 -2.7
747,061 - MPMX20_00722 0.76 -0.1
747,061 - MPMX20_00722 0.76 +0.3
747,073 + MPMX20_00722 0.77 -0.1
747,073 + MPMX20_00722 0.77 -1.4
747,073 + MPMX20_00722 0.77 +0.8
747,081 - MPMX20_00722 0.78 -1.1
747,081 - MPMX20_00722 0.78 +0.3
747,209 + MPMX20_00722 0.89 -2.3
747,226 + -0.8
747,226 + -0.8
747,234 - +1.5
747,291 + -0.1
747,291 + -0.9
747,330 + +0.7
747,442 + -0.6
747,450 - +0.1
747,450 - -0.3
747,497 + MPMX20_00723 0.11 -1.9
747,497 + MPMX20_00723 0.11 -0.1
747,505 - MPMX20_00723 0.12 -1.1
747,615 - MPMX20_00723 0.24 +1.0
747,620 - MPMX20_00723 0.25 +2.3
747,633 - MPMX20_00723 0.26 -1.1
747,633 - MPMX20_00723 0.26 -0.3
747,638 - MPMX20_00723 0.27 -0.6
747,680 - MPMX20_00723 0.31 -0.2
747,754 - MPMX20_00723 0.39 +0.8
747,770 + MPMX20_00723 0.41 +0.8
747,797 - MPMX20_00723 0.44 +3.1
747,864 - MPMX20_00723 0.52 +1.9
747,874 - MPMX20_00723 0.53 -1.7
747,955 + MPMX20_00723 0.62 +9.9
747,955 + MPMX20_00723 0.62 -1.3
747,955 + MPMX20_00723 0.62 +0.8
747,963 - MPMX20_00723 0.63 -0.6
747,963 - MPMX20_00723 0.63 -0.9
747,963 - MPMX20_00723 0.63 -1.9
747,963 - MPMX20_00723 0.63 -0.3
747,963 - MPMX20_00723 0.63 -0.2
747,963 - MPMX20_00723 0.63 +0.3
747,963 - MPMX20_00723 0.63 -1.1
748,003 + MPMX20_00723 0.67 -1.6
748,011 + MPMX20_00723 0.68 -1.0
748,019 - MPMX20_00723 0.69 +0.3
748,079 + MPMX20_00723 0.76 -0.5
748,079 + MPMX20_00723 0.76 -1.1
748,079 + MPMX20_00723 0.76 +0.7
748,095 - MPMX20_00723 0.77 +1.3
748,255 - -0.7
748,277 + -0.1
748,833 + +0.1
748,856 + +0.5
748,856 - +0.7
748,864 - -0.8
748,895 + -0.5

Or see this region's nucleotide sequence