Experiment: M9 plate, 1:1 coculture with Paraburkholderia phenoluptrix CO2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_00718 and MPMX20_00719 overlap by 24 nucleotides MPMX20_00719 and MPMX20_00720 are separated by 297 nucleotides MPMX20_00720 and MPMX20_00721 are separated by 87 nucleotides
MPMX20_00718: MPMX20_00718 - Proline/betaine transporter, at 740,674 to 741,996
_00718
MPMX20_00719: MPMX20_00719 - Succinate-acetate/proton symporter SatP, at 741,973 to 742,539
_00719
MPMX20_00720: MPMX20_00720 - Chaperone protein DnaK, at 742,837 to 744,750
_00720
MPMX20_00721: MPMX20_00721 - Chaperone protein DnaJ, at 744,838 to 745,983
_00721
Position (kb) 742
743
744
745 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 741.859 kb on - strand, within MPMX20_00718 at 741.901 kb on + strand at 741.958 kb on - strand at 741.964 kb on + strand at 742.063 kb on + strand, within MPMX20_00719 at 742.063 kb on + strand, within MPMX20_00719 at 742.063 kb on + strand, within MPMX20_00719 at 742.063 kb on + strand, within MPMX20_00719 at 742.121 kb on + strand, within MPMX20_00719 at 742.129 kb on - strand, within MPMX20_00719 at 742.173 kb on - strand, within MPMX20_00719 at 742.217 kb on - strand, within MPMX20_00719 at 742.307 kb on - strand, within MPMX20_00719 at 742.307 kb on - strand, within MPMX20_00719 at 742.313 kb on - strand, within MPMX20_00719 at 742.344 kb on + strand, within MPMX20_00719 at 742.344 kb on + strand, within MPMX20_00719 at 742.344 kb on + strand, within MPMX20_00719 at 742.345 kb on + strand, within MPMX20_00719 at 742.352 kb on + strand, within MPMX20_00719 at 742.352 kb on - strand, within MPMX20_00719 at 742.360 kb on - strand, within MPMX20_00719 at 742.464 kb on + strand, within MPMX20_00719 at 742.473 kb on + strand, within MPMX20_00719 at 742.481 kb on - strand, within MPMX20_00719 at 742.482 kb on - strand, within MPMX20_00719 at 742.532 kb on - strand at 742.532 kb on - strand at 742.534 kb on + strand at 742.534 kb on + strand at 742.542 kb on - strand at 742.542 kb on - strand at 742.584 kb on - strand at 742.597 kb on + strand at 742.622 kb on - strand at 742.644 kb on + strand at 742.685 kb on + strand at 742.693 kb on - strand at 742.693 kb on - strand at 742.700 kb on + strand at 742.731 kb on + strand at 742.731 kb on + strand at 742.738 kb on - strand at 742.739 kb on - strand at 744.347 kb on + strand, within MPMX20_00720 at 744.347 kb on + strand, within MPMX20_00720 at 744.533 kb on + strand, within MPMX20_00720 at 744.609 kb on + strand at 744.666 kb on + strand at 744.783 kb on + strand at 745.235 kb on - strand, within MPMX20_00721 at 745.409 kb on + strand, within MPMX20_00721 at 745.412 kb on - strand, within MPMX20_00721 at 745.445 kb on - strand, within MPMX20_00721 at 745.456 kb on + strand, within MPMX20_00721 at 745.554 kb on - strand, within MPMX20_00721 at 745.636 kb on + strand, within MPMX20_00721 at 745.644 kb on - strand, within MPMX20_00721 at 745.737 kb on - strand, within MPMX20_00721
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Paraburkholderia phenoluptrix CO2 remove 741,859 - MPMX20_00718 0.90 +1.1 741,901 + -1.9 741,958 - +1.7 741,964 + +0.5 742,063 + MPMX20_00719 0.16 -0.2 742,063 + MPMX20_00719 0.16 +0.8 742,063 + MPMX20_00719 0.16 +0.8 742,063 + MPMX20_00719 0.16 -1.2 742,121 + MPMX20_00719 0.26 +0.3 742,129 - MPMX20_00719 0.28 +3.1 742,173 - MPMX20_00719 0.35 +0.1 742,217 - MPMX20_00719 0.43 -1.8 742,307 - MPMX20_00719 0.59 +2.1 742,307 - MPMX20_00719 0.59 -1.8 742,313 - MPMX20_00719 0.60 +3.5 742,344 + MPMX20_00719 0.65 +1.0 742,344 + MPMX20_00719 0.65 +0.7 742,344 + MPMX20_00719 0.65 +1.9 742,345 + MPMX20_00719 0.66 +0.5 742,352 + MPMX20_00719 0.67 -0.3 742,352 - MPMX20_00719 0.67 +1.3 742,360 - MPMX20_00719 0.68 -0.2 742,464 + MPMX20_00719 0.87 -0.9 742,473 + MPMX20_00719 0.88 -0.1 742,481 - MPMX20_00719 0.90 +1.3 742,482 - MPMX20_00719 0.90 -1.3 742,532 - +2.1 742,532 - +0.9 742,534 + +0.8 742,534 + -0.2 742,542 - -1.6 742,542 - +1.5 742,584 - +0.2 742,597 + -2.0 742,622 - -0.5 742,644 + -1.0 742,685 + +0.7 742,693 - +0.3 742,693 - +0.7 742,700 + +1.1 742,731 + -1.1 742,731 + +1.1 742,738 - +1.3 742,739 - -0.4 744,347 + MPMX20_00720 0.79 +1.1 744,347 + MPMX20_00720 0.79 +2.8 744,533 + MPMX20_00720 0.89 +0.1 744,609 + -0.3 744,666 + +3.1 744,783 + -0.1 745,235 - MPMX20_00721 0.35 +1.5 745,409 + MPMX20_00721 0.50 +1.5 745,412 - MPMX20_00721 0.50 +2.1 745,445 - MPMX20_00721 0.53 +0.3 745,456 + MPMX20_00721 0.54 +0.8 745,554 - MPMX20_00721 0.62 +1.1 745,636 + MPMX20_00721 0.70 +1.4 745,644 - MPMX20_00721 0.70 -0.1 745,737 - MPMX20_00721 0.78 +2.1
Or see this region's nucleotide sequence