Experiment: M9 plate, 1:1 coculture with Paraburkholderia phenoluptrix CO2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_00504 and MPMX20_00505 are separated by 2 nucleotides MPMX20_00505 and MPMX20_00506 are separated by 42 nucleotides MPMX20_00506 and MPMX20_00507 are separated by 481 nucleotides
MPMX20_00504: MPMX20_00504 - Translocation and assembly module subunit TamB, at 519,235 to 523,011
_00504
MPMX20_00505: MPMX20_00505 - Gamma-glutamylcyclotransferase family protein ytfP, at 523,014 to 523,358
_00505
MPMX20_00506: MPMX20_00506 - hypothetical protein, at 523,401 to 523,724
_00506
MPMX20_00507: MPMX20_00507 - Inorganic pyrophosphatase, at 524,206 to 524,736
_00507
Position (kb) 523
524 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 522.152 kb on + strand, within MPMX20_00504 at 522.160 kb on - strand, within MPMX20_00504 at 522.160 kb on - strand, within MPMX20_00504 at 522.160 kb on - strand, within MPMX20_00504 at 522.160 kb on - strand, within MPMX20_00504 at 522.161 kb on + strand, within MPMX20_00504 at 522.217 kb on + strand, within MPMX20_00504 at 522.217 kb on + strand, within MPMX20_00504 at 522.283 kb on + strand, within MPMX20_00504 at 522.283 kb on + strand, within MPMX20_00504 at 522.291 kb on - strand, within MPMX20_00504 at 522.319 kb on - strand, within MPMX20_00504 at 522.356 kb on + strand, within MPMX20_00504 at 522.402 kb on + strand, within MPMX20_00504 at 522.402 kb on + strand, within MPMX20_00504 at 522.410 kb on - strand, within MPMX20_00504 at 522.410 kb on - strand, within MPMX20_00504 at 522.410 kb on - strand, within MPMX20_00504 at 522.421 kb on - strand, within MPMX20_00504 at 522.483 kb on + strand, within MPMX20_00504 at 522.498 kb on + strand, within MPMX20_00504 at 522.607 kb on + strand, within MPMX20_00504 at 522.629 kb on + strand, within MPMX20_00504 at 522.666 kb on - strand at 522.666 kb on - strand at 522.680 kb on + strand at 522.685 kb on + strand at 522.688 kb on - strand at 522.688 kb on - strand at 522.693 kb on - strand at 522.693 kb on - strand at 522.710 kb on + strand at 522.718 kb on - strand at 522.721 kb on + strand at 522.736 kb on + strand at 522.736 kb on + strand at 522.744 kb on - strand at 522.815 kb on + strand at 522.815 kb on + strand at 522.823 kb on - strand at 522.825 kb on + strand at 522.854 kb on + strand at 522.859 kb on + strand at 522.897 kb on - strand at 522.941 kb on - strand at 522.950 kb on + strand at 522.959 kb on - strand at 522.976 kb on - strand at 522.976 kb on - strand at 522.976 kb on - strand at 522.980 kb on - strand at 522.981 kb on - strand at 523.036 kb on - strand at 523.060 kb on - strand, within MPMX20_00505 at 523.060 kb on - strand, within MPMX20_00505 at 523.068 kb on - strand, within MPMX20_00505 at 523.068 kb on - strand, within MPMX20_00505 at 523.068 kb on - strand, within MPMX20_00505 at 523.080 kb on - strand, within MPMX20_00505 at 523.080 kb on - strand, within MPMX20_00505 at 523.123 kb on + strand, within MPMX20_00505 at 523.131 kb on - strand, within MPMX20_00505 at 523.131 kb on - strand, within MPMX20_00505 at 523.143 kb on - strand, within MPMX20_00505 at 523.159 kb on + strand, within MPMX20_00505 at 523.192 kb on + strand, within MPMX20_00505 at 523.192 kb on + strand, within MPMX20_00505 at 523.200 kb on - strand, within MPMX20_00505 at 523.263 kb on + strand, within MPMX20_00505 at 523.265 kb on + strand, within MPMX20_00505 at 523.273 kb on - strand, within MPMX20_00505 at 523.273 kb on - strand, within MPMX20_00505 at 523.273 kb on - strand, within MPMX20_00505 at 523.273 kb on - strand, within MPMX20_00505 at 523.341 kb on + strand at 523.404 kb on + strand at 523.409 kb on + strand at 523.409 kb on + strand at 523.412 kb on - strand at 523.417 kb on - strand at 523.417 kb on - strand at 523.417 kb on - strand at 523.429 kb on + strand at 523.466 kb on - strand, within MPMX20_00506 at 523.477 kb on + strand, within MPMX20_00506 at 523.477 kb on + strand, within MPMX20_00506 at 523.477 kb on + strand, within MPMX20_00506 at 523.481 kb on + strand, within MPMX20_00506 at 523.516 kb on - strand, within MPMX20_00506 at 523.516 kb on - strand, within MPMX20_00506 at 523.642 kb on - strand, within MPMX20_00506 at 523.678 kb on - strand, within MPMX20_00506 at 523.679 kb on + strand, within MPMX20_00506 at 523.679 kb on + strand, within MPMX20_00506 at 523.679 kb on + strand, within MPMX20_00506 at 523.679 kb on + strand, within MPMX20_00506 at 523.679 kb on + strand, within MPMX20_00506 at 523.679 kb on - strand, within MPMX20_00506 at 523.679 kb on - strand, within MPMX20_00506 at 523.687 kb on - strand, within MPMX20_00506 at 523.687 kb on - strand, within MPMX20_00506 at 523.687 kb on - strand, within MPMX20_00506 at 523.687 kb on - strand, within MPMX20_00506 at 523.687 kb on - strand, within MPMX20_00506 at 523.687 kb on - strand, within MPMX20_00506 at 523.687 kb on - strand, within MPMX20_00506 at 523.687 kb on - strand, within MPMX20_00506 at 523.687 kb on - strand, within MPMX20_00506 at 523.694 kb on + strand at 523.694 kb on + strand at 523.694 kb on + strand at 523.694 kb on + strand at 523.694 kb on + strand at 523.701 kb on + strand at 523.702 kb on - strand at 523.702 kb on - strand at 523.702 kb on - strand at 523.702 kb on - strand at 523.702 kb on - strand at 523.702 kb on - strand at 523.702 kb on - strand at 523.702 kb on - strand at 523.702 kb on - strand at 523.702 kb on - strand at 523.702 kb on - strand at 523.709 kb on - strand at 523.747 kb on + strand at 523.747 kb on + strand at 523.747 kb on + strand at 523.747 kb on + strand at 523.747 kb on + strand at 523.747 kb on + strand at 523.747 kb on + strand at 523.752 kb on + strand at 523.752 kb on + strand at 523.752 kb on + strand at 523.752 kb on + strand at 523.752 kb on + strand at 523.752 kb on + strand at 523.752 kb on + strand at 523.752 kb on + strand at 523.752 kb on + strand at 523.752 kb on + strand at 523.755 kb on - strand at 523.755 kb on - strand at 523.755 kb on - strand at 523.755 kb on - strand at 523.755 kb on - strand at 523.755 kb on - strand at 523.755 kb on - strand at 523.755 kb on - strand at 523.755 kb on - strand at 523.755 kb on - strand at 523.755 kb on - strand at 523.755 kb on - strand at 523.755 kb on - strand at 523.755 kb on - strand at 523.755 kb on - strand at 523.755 kb on - strand at 523.755 kb on - strand at 523.757 kb on + strand at 523.757 kb on + strand at 523.757 kb on + strand at 523.760 kb on - strand at 523.760 kb on - strand at 523.760 kb on - strand at 523.760 kb on - strand at 523.760 kb on - strand at 523.760 kb on - strand at 523.760 kb on - strand at 523.760 kb on - strand at 523.760 kb on - strand at 523.760 kb on - strand at 523.760 kb on - strand at 523.760 kb on - strand at 523.760 kb on - strand at 523.806 kb on + strand at 523.806 kb on + strand at 523.808 kb on + strand at 523.812 kb on + strand at 523.812 kb on + strand at 523.814 kb on - strand at 523.816 kb on - strand at 523.818 kb on + strand at 523.818 kb on + strand at 523.821 kb on - strand at 523.821 kb on - strand at 523.826 kb on - strand at 523.826 kb on - strand at 523.826 kb on - strand at 523.839 kb on - strand at 523.839 kb on - strand at 523.841 kb on - strand at 523.864 kb on + strand at 523.864 kb on + strand at 523.869 kb on + strand at 523.869 kb on + strand at 523.869 kb on + strand at 523.869 kb on + strand at 523.885 kb on + strand at 523.885 kb on + strand at 523.886 kb on + strand at 523.893 kb on - strand at 523.944 kb on + strand at 523.944 kb on + strand at 523.944 kb on + strand at 523.945 kb on + strand at 523.945 kb on + strand at 523.952 kb on - strand at 523.953 kb on - strand at 523.966 kb on + strand at 523.985 kb on - strand at 524.003 kb on - strand at 524.007 kb on + strand at 524.013 kb on - strand at 524.025 kb on + strand at 524.026 kb on + strand at 524.033 kb on - strand at 524.035 kb on + strand at 524.044 kb on + strand at 524.044 kb on + strand at 524.052 kb on - strand at 524.052 kb on - strand at 524.057 kb on - strand at 524.057 kb on - strand at 524.059 kb on + strand at 524.060 kb on + strand at 524.060 kb on + strand at 524.060 kb on + strand at 524.060 kb on + strand at 524.067 kb on + strand at 524.068 kb on - strand at 524.080 kb on + strand at 524.080 kb on + strand at 524.080 kb on + strand at 524.081 kb on + strand at 524.083 kb on + strand at 524.083 kb on + strand at 524.088 kb on - strand at 524.091 kb on - strand at 524.127 kb on - strand at 524.129 kb on - strand at 524.132 kb on - strand at 524.211 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Paraburkholderia phenoluptrix CO2 remove 522,152 + MPMX20_00504 0.77 -0.3 522,160 - MPMX20_00504 0.77 -1.1 522,160 - MPMX20_00504 0.77 -0.4 522,160 - MPMX20_00504 0.77 +1.9 522,160 - MPMX20_00504 0.77 +3.1 522,161 + MPMX20_00504 0.77 -0.1 522,217 + MPMX20_00504 0.79 +1.5 522,217 + MPMX20_00504 0.79 -0.6 522,283 + MPMX20_00504 0.81 -0.9 522,283 + MPMX20_00504 0.81 +1.1 522,291 - MPMX20_00504 0.81 -0.7 522,319 - MPMX20_00504 0.82 -0.7 522,356 + MPMX20_00504 0.83 +0.2 522,402 + MPMX20_00504 0.84 +2.1 522,402 + MPMX20_00504 0.84 +0.3 522,410 - MPMX20_00504 0.84 +0.5 522,410 - MPMX20_00504 0.84 +0.1 522,410 - MPMX20_00504 0.84 +4.1 522,421 - MPMX20_00504 0.84 -0.2 522,483 + MPMX20_00504 0.86 +0.4 522,498 + MPMX20_00504 0.86 -0.8 522,607 + MPMX20_00504 0.89 -1.1 522,629 + MPMX20_00504 0.90 -1.7 522,666 - +0.1 522,666 - -1.2 522,680 + +0.7 522,685 + -0.6 522,688 - -1.9 522,688 - -2.7 522,693 - -0.8 522,693 - +1.1 522,710 + +1.6 522,718 - +0.3 522,721 + -1.6 522,736 + +2.5 522,736 + -0.1 522,744 - -1.1 522,815 + -1.1 522,815 + -0.9 522,823 - +1.5 522,825 + -0.6 522,854 + +0.0 522,859 + -0.9 522,897 - -0.4 522,941 - +0.1 522,950 + +0.8 522,959 - -0.0 522,976 - -1.4 522,976 - -0.2 522,976 - -1.3 522,980 - +3.1 522,981 - -3.0 523,036 - +0.3 523,060 - MPMX20_00505 0.13 -1.2 523,060 - MPMX20_00505 0.13 -0.5 523,068 - MPMX20_00505 0.16 -0.8 523,068 - MPMX20_00505 0.16 +0.6 523,068 - MPMX20_00505 0.16 -1.9 523,080 - MPMX20_00505 0.19 -1.0 523,080 - MPMX20_00505 0.19 -1.7 523,123 + MPMX20_00505 0.32 -2.8 523,131 - MPMX20_00505 0.34 -1.7 523,131 - MPMX20_00505 0.34 -1.6 523,143 - MPMX20_00505 0.37 +0.4 523,159 + MPMX20_00505 0.42 -1.6 523,192 + MPMX20_00505 0.52 +1.1 523,192 + MPMX20_00505 0.52 -0.2 523,200 - MPMX20_00505 0.54 -2.3 523,263 + MPMX20_00505 0.72 -1.1 523,265 + MPMX20_00505 0.73 -1.0 523,273 - MPMX20_00505 0.75 -2.4 523,273 - MPMX20_00505 0.75 +1.1 523,273 - MPMX20_00505 0.75 +0.5 523,273 - MPMX20_00505 0.75 -2.7 523,341 + -1.4 523,404 + -1.2 523,409 + -0.5 523,409 + +2.1 523,412 - +0.0 523,417 - -0.6 523,417 - -0.4 523,417 - -1.8 523,429 + -0.8 523,466 - MPMX20_00506 0.20 +0.3 523,477 + MPMX20_00506 0.23 -1.2 523,477 + MPMX20_00506 0.23 -1.1 523,477 + MPMX20_00506 0.23 -0.6 523,481 + MPMX20_00506 0.25 -0.5 523,516 - MPMX20_00506 0.35 -0.6 523,516 - MPMX20_00506 0.35 -2.1 523,642 - MPMX20_00506 0.74 -0.1 523,678 - MPMX20_00506 0.85 -1.6 523,679 + MPMX20_00506 0.86 -1.2 523,679 + MPMX20_00506 0.86 +0.5 523,679 + MPMX20_00506 0.86 +0.4 523,679 + MPMX20_00506 0.86 +0.3 523,679 + MPMX20_00506 0.86 +2.4 523,679 - MPMX20_00506 0.86 +0.8 523,679 - MPMX20_00506 0.86 +1.1 523,687 - MPMX20_00506 0.88 -1.7 523,687 - MPMX20_00506 0.88 -1.4 523,687 - MPMX20_00506 0.88 -0.2 523,687 - MPMX20_00506 0.88 +2.1 523,687 - MPMX20_00506 0.88 +1.7 523,687 - MPMX20_00506 0.88 -1.0 523,687 - MPMX20_00506 0.88 -1.6 523,687 - MPMX20_00506 0.88 -0.4 523,687 - MPMX20_00506 0.88 -1.7 523,694 + +0.0 523,694 + +2.1 523,694 + -1.3 523,694 + +0.5 523,694 + +1.8 523,701 + -0.2 523,702 - -0.1 523,702 - +0.3 523,702 - -2.7 523,702 - -1.3 523,702 - -1.0 523,702 - -0.4 523,702 - -0.8 523,702 - +0.2 523,702 - -2.8 523,702 - +1.5 523,702 - +0.1 523,709 - -0.8 523,747 + -1.8 523,747 + +0.6 523,747 + -2.6 523,747 + +0.2 523,747 + -0.8 523,747 + -1.0 523,747 + -0.1 523,752 + -1.2 523,752 + +0.8 523,752 + +0.1 523,752 + +0.2 523,752 + +0.4 523,752 + -0.1 523,752 + +1.1 523,752 + -1.0 523,752 + -0.9 523,752 + +3.8 523,755 - -0.3 523,755 - +0.1 523,755 - -0.4 523,755 - -0.2 523,755 - -0.6 523,755 - +0.8 523,755 - -1.5 523,755 - +4.8 523,755 - -1.0 523,755 - -1.0 523,755 - -0.6 523,755 - +0.6 523,755 - +0.7 523,755 - -1.4 523,755 - -0.6 523,755 - -1.4 523,755 - -0.4 523,757 + +1.5 523,757 + -0.6 523,757 + -2.0 523,760 - -1.5 523,760 - +0.3 523,760 - -0.1 523,760 - -0.2 523,760 - +0.4 523,760 - +0.5 523,760 - +1.5 523,760 - -1.4 523,760 - +0.4 523,760 - -1.8 523,760 - -0.4 523,760 - -1.9 523,760 - +0.5 523,806 + -1.3 523,806 + +0.5 523,808 + -0.6 523,812 + -1.7 523,812 + -0.4 523,814 - -1.6 523,816 - -1.4 523,818 + -1.9 523,818 + +1.5 523,821 - +2.1 523,821 - +0.5 523,826 - -0.2 523,826 - -0.4 523,826 - -1.7 523,839 - -0.7 523,839 - -1.4 523,841 - -2.3 523,864 + -0.1 523,864 + -0.2 523,869 + -1.3 523,869 + -2.4 523,869 + +0.8 523,869 + +0.5 523,885 + -0.2 523,885 + +0.8 523,886 + +0.9 523,893 - +1.5 523,944 + +0.8 523,944 + -1.5 523,944 + +0.8 523,945 + +0.8 523,945 + +1.5 523,952 - +2.7 523,953 - +0.1 523,966 + +1.4 523,985 - -1.3 524,003 - -0.4 524,007 + +1.7 524,013 - -2.0 524,025 + +0.8 524,026 + +1.5 524,033 - -1.9 524,035 + -1.3 524,044 + -0.2 524,044 + +0.9 524,052 - -1.0 524,052 - -0.1 524,057 - +0.2 524,057 - -0.7 524,059 + -1.8 524,060 + +2.1 524,060 + -1.0 524,060 + -1.2 524,060 + +2.1 524,067 + -1.6 524,068 - -1.1 524,080 + -0.4 524,080 + -1.0 524,080 + -0.2 524,081 + +0.0 524,083 + -1.6 524,083 + -1.3 524,088 - +0.6 524,091 - +0.3 524,127 - -2.7 524,129 - +1.2 524,132 - -0.9 524,211 - -0.1
Or see this region's nucleotide sequence