Experiment: M9 plate, 1:1 coculture with Paraburkholderia phenoluptrix CO2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_00491 and MPMX20_00492 are separated by 190 nucleotides MPMX20_00492 and MPMX20_00493 overlap by 7 nucleotides MPMX20_00493 and MPMX20_00494 are separated by 324 nucleotides
MPMX20_00491: MPMX20_00491 - 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase, at 503,741 to 505,684
_00491
MPMX20_00492: MPMX20_00492 - 3'(2'),5'-bisphosphate nucleotidase CysQ, at 505,875 to 506,615
_00492
MPMX20_00493: MPMX20_00493 - putative protein YtfJ, at 506,609 to 507,166
_00493
MPMX20_00494: MPMX20_00494 - hypothetical protein, at 507,491 to 507,697
_00494
Position (kb) 505
506
507 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7
8
9 at 504.878 kb on - strand, within MPMX20_00491 at 504.894 kb on + strand, within MPMX20_00491 at 504.894 kb on + strand, within MPMX20_00491 at 504.895 kb on - strand, within MPMX20_00491 at 504.906 kb on + strand, within MPMX20_00491 at 504.917 kb on + strand, within MPMX20_00491 at 504.946 kb on - strand, within MPMX20_00491 at 504.980 kb on + strand, within MPMX20_00491 at 505.003 kb on + strand, within MPMX20_00491 at 505.003 kb on + strand, within MPMX20_00491 at 505.033 kb on - strand, within MPMX20_00491 at 505.033 kb on - strand, within MPMX20_00491 at 505.093 kb on - strand, within MPMX20_00491 at 505.116 kb on + strand, within MPMX20_00491 at 505.128 kb on - strand, within MPMX20_00491 at 505.185 kb on - strand, within MPMX20_00491 at 505.185 kb on - strand, within MPMX20_00491 at 505.274 kb on - strand, within MPMX20_00491 at 505.292 kb on + strand, within MPMX20_00491 at 505.356 kb on + strand, within MPMX20_00491 at 505.356 kb on + strand, within MPMX20_00491 at 505.356 kb on + strand, within MPMX20_00491 at 505.356 kb on + strand, within MPMX20_00491 at 505.356 kb on + strand, within MPMX20_00491 at 505.356 kb on + strand, within MPMX20_00491 at 505.356 kb on + strand, within MPMX20_00491 at 505.356 kb on + strand, within MPMX20_00491 at 505.360 kb on + strand, within MPMX20_00491 at 505.360 kb on + strand, within MPMX20_00491 at 505.364 kb on - strand, within MPMX20_00491 at 505.364 kb on - strand, within MPMX20_00491 at 505.364 kb on - strand, within MPMX20_00491 at 505.364 kb on - strand, within MPMX20_00491 at 505.364 kb on - strand, within MPMX20_00491 at 505.364 kb on - strand, within MPMX20_00491 at 505.364 kb on - strand, within MPMX20_00491 at 505.364 kb on - strand, within MPMX20_00491 at 505.368 kb on - strand, within MPMX20_00491 at 505.368 kb on - strand, within MPMX20_00491 at 505.378 kb on - strand, within MPMX20_00491 at 505.387 kb on - strand, within MPMX20_00491 at 505.394 kb on + strand, within MPMX20_00491 at 505.394 kb on + strand, within MPMX20_00491 at 505.405 kb on + strand, within MPMX20_00491 at 505.422 kb on + strand, within MPMX20_00491 at 505.454 kb on - strand, within MPMX20_00491 at 505.481 kb on + strand, within MPMX20_00491 at 505.513 kb on + strand at 505.529 kb on - strand at 505.591 kb on + strand at 505.591 kb on + strand at 505.615 kb on + strand at 505.690 kb on - strand at 505.692 kb on - strand at 505.929 kb on + strand at 505.937 kb on - strand at 505.947 kb on - strand at 505.976 kb on - strand, within MPMX20_00492 at 506.033 kb on - strand, within MPMX20_00492 at 506.078 kb on + strand, within MPMX20_00492 at 506.098 kb on - strand, within MPMX20_00492 at 506.134 kb on + strand, within MPMX20_00492 at 506.160 kb on + strand, within MPMX20_00492 at 506.231 kb on + strand, within MPMX20_00492 at 506.238 kb on + strand, within MPMX20_00492 at 506.238 kb on + strand, within MPMX20_00492 at 506.246 kb on - strand, within MPMX20_00492 at 506.246 kb on - strand, within MPMX20_00492 at 506.248 kb on + strand, within MPMX20_00492 at 506.258 kb on + strand, within MPMX20_00492 at 506.271 kb on + strand, within MPMX20_00492 at 506.297 kb on + strand, within MPMX20_00492 at 506.336 kb on - strand, within MPMX20_00492 at 506.361 kb on + strand, within MPMX20_00492 at 506.389 kb on - strand, within MPMX20_00492 at 506.399 kb on - strand, within MPMX20_00492 at 506.426 kb on - strand, within MPMX20_00492 at 506.443 kb on + strand, within MPMX20_00492 at 506.451 kb on - strand, within MPMX20_00492 at 506.453 kb on + strand, within MPMX20_00492 at 506.461 kb on - strand, within MPMX20_00492 at 506.461 kb on - strand, within MPMX20_00492 at 506.518 kb on - strand, within MPMX20_00492 at 506.532 kb on + strand, within MPMX20_00492 at 506.558 kb on + strand at 506.558 kb on + strand at 506.558 kb on + strand at 506.566 kb on - strand at 506.566 kb on - strand at 506.568 kb on - strand at 506.656 kb on - strand at 506.663 kb on + strand at 506.663 kb on + strand at 506.687 kb on + strand, within MPMX20_00493 at 506.689 kb on + strand, within MPMX20_00493 at 506.697 kb on - strand, within MPMX20_00493 at 506.743 kb on + strand, within MPMX20_00493 at 506.763 kb on - strand, within MPMX20_00493 at 506.819 kb on - strand, within MPMX20_00493 at 506.915 kb on + strand, within MPMX20_00493 at 506.969 kb on + strand, within MPMX20_00493 at 506.979 kb on + strand, within MPMX20_00493 at 506.987 kb on - strand, within MPMX20_00493 at 507.003 kb on + strand, within MPMX20_00493 at 507.006 kb on - strand, within MPMX20_00493 at 507.008 kb on + strand, within MPMX20_00493 at 507.011 kb on - strand, within MPMX20_00493 at 507.016 kb on - strand, within MPMX20_00493 at 507.116 kb on - strand at 507.130 kb on - strand at 507.148 kb on + strand at 507.148 kb on + strand at 507.169 kb on - strand at 507.181 kb on + strand at 507.181 kb on + strand at 507.235 kb on + strand at 507.300 kb on + strand at 507.300 kb on + strand at 507.300 kb on + strand at 507.300 kb on + strand at 507.301 kb on + strand at 507.305 kb on + strand at 507.308 kb on - strand at 507.308 kb on - strand at 507.310 kb on + strand at 507.313 kb on - strand at 507.315 kb on + strand at 507.315 kb on + strand at 507.323 kb on - strand at 507.323 kb on - strand at 507.323 kb on - strand at 507.379 kb on + strand at 507.381 kb on + strand at 507.381 kb on + strand at 507.389 kb on + strand at 507.389 kb on + strand at 507.389 kb on + strand at 507.389 kb on - strand at 507.389 kb on - strand at 507.389 kb on - strand at 507.394 kb on + strand at 507.397 kb on - strand at 507.397 kb on - strand at 507.397 kb on - strand at 507.397 kb on - strand at 507.397 kb on - strand at 507.397 kb on - strand at 507.397 kb on - strand at 507.397 kb on - strand at 507.397 kb on - strand at 507.397 kb on - strand at 507.399 kb on + strand at 507.399 kb on + strand at 507.402 kb on - strand at 507.407 kb on - strand at 507.440 kb on - strand at 507.455 kb on - strand at 507.465 kb on - strand at 507.516 kb on - strand, within MPMX20_00494 at 507.567 kb on - strand, within MPMX20_00494
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Paraburkholderia phenoluptrix CO2 remove 504,878 - MPMX20_00491 0.58 +0.5 504,894 + MPMX20_00491 0.59 +0.4 504,894 + MPMX20_00491 0.59 +0.4 504,895 - MPMX20_00491 0.59 +0.8 504,906 + MPMX20_00491 0.60 -0.9 504,917 + MPMX20_00491 0.60 -1.4 504,946 - MPMX20_00491 0.62 -0.3 504,980 + MPMX20_00491 0.64 -0.6 505,003 + MPMX20_00491 0.65 +0.0 505,003 + MPMX20_00491 0.65 -0.9 505,033 - MPMX20_00491 0.66 -2.0 505,033 - MPMX20_00491 0.66 -1.1 505,093 - MPMX20_00491 0.70 +2.3 505,116 + MPMX20_00491 0.71 -0.8 505,128 - MPMX20_00491 0.71 +3.1 505,185 - MPMX20_00491 0.74 +0.1 505,185 - MPMX20_00491 0.74 -0.6 505,274 - MPMX20_00491 0.79 -1.2 505,292 + MPMX20_00491 0.80 +0.1 505,356 + MPMX20_00491 0.83 -1.7 505,356 + MPMX20_00491 0.83 +0.1 505,356 + MPMX20_00491 0.83 -0.0 505,356 + MPMX20_00491 0.83 +0.5 505,356 + MPMX20_00491 0.83 -1.4 505,356 + MPMX20_00491 0.83 +0.8 505,356 + MPMX20_00491 0.83 -0.7 505,356 + MPMX20_00491 0.83 +2.1 505,360 + MPMX20_00491 0.83 -1.2 505,360 + MPMX20_00491 0.83 +2.1 505,364 - MPMX20_00491 0.83 -0.1 505,364 - MPMX20_00491 0.83 -1.3 505,364 - MPMX20_00491 0.83 -0.9 505,364 - MPMX20_00491 0.83 -1.4 505,364 - MPMX20_00491 0.83 +2.1 505,364 - MPMX20_00491 0.83 -1.4 505,364 - MPMX20_00491 0.83 -2.2 505,364 - MPMX20_00491 0.83 +0.2 505,368 - MPMX20_00491 0.84 +1.4 505,368 - MPMX20_00491 0.84 +0.8 505,378 - MPMX20_00491 0.84 +2.1 505,387 - MPMX20_00491 0.85 -2.0 505,394 + MPMX20_00491 0.85 +1.8 505,394 + MPMX20_00491 0.85 +0.3 505,405 + MPMX20_00491 0.86 +0.3 505,422 + MPMX20_00491 0.86 +0.5 505,454 - MPMX20_00491 0.88 +3.1 505,481 + MPMX20_00491 0.90 +2.1 505,513 + +1.5 505,529 - -2.6 505,591 + -1.5 505,591 + +0.6 505,615 + -0.2 505,690 - -0.6 505,692 - +0.9 505,929 + +2.1 505,937 - -1.5 505,947 - +3.7 505,976 - MPMX20_00492 0.14 +0.5 506,033 - MPMX20_00492 0.21 +0.3 506,078 + MPMX20_00492 0.27 +1.1 506,098 - MPMX20_00492 0.30 +2.5 506,134 + MPMX20_00492 0.35 +1.8 506,160 + MPMX20_00492 0.38 -0.1 506,231 + MPMX20_00492 0.48 -0.4 506,238 + MPMX20_00492 0.49 +0.4 506,238 + MPMX20_00492 0.49 +0.4 506,246 - MPMX20_00492 0.50 +0.5 506,246 - MPMX20_00492 0.50 -0.7 506,248 + MPMX20_00492 0.50 +0.3 506,258 + MPMX20_00492 0.52 -1.0 506,271 + MPMX20_00492 0.53 -1.8 506,297 + MPMX20_00492 0.57 +2.2 506,336 - MPMX20_00492 0.62 -1.0 506,361 + MPMX20_00492 0.66 +0.5 506,389 - MPMX20_00492 0.69 +0.5 506,399 - MPMX20_00492 0.71 -0.2 506,426 - MPMX20_00492 0.74 +1.1 506,443 + MPMX20_00492 0.77 +1.1 506,451 - MPMX20_00492 0.78 -0.9 506,453 + MPMX20_00492 0.78 +2.3 506,461 - MPMX20_00492 0.79 -1.9 506,461 - MPMX20_00492 0.79 -1.2 506,518 - MPMX20_00492 0.87 +0.5 506,532 + MPMX20_00492 0.89 -1.0 506,558 + +1.1 506,558 + +0.3 506,558 + -1.5 506,566 - -2.1 506,566 - +0.1 506,568 - -1.3 506,656 - +0.2 506,663 + -1.3 506,663 + +0.1 506,687 + MPMX20_00493 0.14 +0.3 506,689 + MPMX20_00493 0.14 -2.2 506,697 - MPMX20_00493 0.16 -1.3 506,743 + MPMX20_00493 0.24 -0.1 506,763 - MPMX20_00493 0.28 -0.3 506,819 - MPMX20_00493 0.38 +0.3 506,915 + MPMX20_00493 0.55 +2.3 506,969 + MPMX20_00493 0.65 -0.0 506,979 + MPMX20_00493 0.66 -0.0 506,987 - MPMX20_00493 0.68 +0.1 507,003 + MPMX20_00493 0.71 -0.5 507,006 - MPMX20_00493 0.71 +2.1 507,008 + MPMX20_00493 0.72 -1.5 507,011 - MPMX20_00493 0.72 +1.5 507,016 - MPMX20_00493 0.73 -0.1 507,116 - -1.2 507,130 - -1.5 507,148 + -1.2 507,148 + +0.8 507,169 - -1.2 507,181 + +2.7 507,181 + +3.1 507,235 + -0.2 507,300 + -0.7 507,300 + -0.8 507,300 + +0.5 507,300 + -1.0 507,301 + +0.5 507,305 + -0.2 507,308 - -3.2 507,308 - -0.8 507,310 + +0.0 507,313 - -1.1 507,315 + -0.2 507,315 + +0.8 507,323 - -0.2 507,323 - +0.9 507,323 - +0.2 507,379 + +3.1 507,381 + +2.8 507,381 + -1.3 507,389 + +1.1 507,389 + +1.1 507,389 + +0.2 507,389 - +0.3 507,389 - -1.0 507,389 - +0.4 507,394 + +0.0 507,397 - +0.6 507,397 - +0.8 507,397 - +1.1 507,397 - -0.1 507,397 - -1.0 507,397 - -0.8 507,397 - +1.7 507,397 - -0.8 507,397 - -0.7 507,397 - +1.0 507,399 + -0.1 507,399 + -0.7 507,402 - +9.2 507,407 - -1.1 507,440 - +2.1 507,455 - +2.5 507,465 - +4.0 507,516 - MPMX20_00494 0.12 +2.0 507,567 - MPMX20_00494 0.37 -0.5
Or see this region's nucleotide sequence