Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00471

Experiment: M9 plate, 1:1 coculture with Paraburkholderia phenoluptrix CO2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00470 and MPMX20_00471 are separated by 12 nucleotidesMPMX20_00471 and MPMX20_00472 are separated by 9 nucleotidesMPMX20_00472 and MPMX20_00473 are separated by 13 nucleotides MPMX20_00470: MPMX20_00470 - Ascorbate-specific PTS system EIIC component, at 486,855 to 488,255 _00470 MPMX20_00471: MPMX20_00471 - Ascorbate-specific PTS system EIIB component, at 488,268 to 488,573 _00471 MPMX20_00472: MPMX20_00472 - Ascorbate-specific PTS system EIIA component, at 488,583 to 489,050 _00472 MPMX20_00473: MPMX20_00473 - 3-keto-L-gulonate-6-phosphate decarboxylase UlaD, at 489,064 to 489,714 _00473 Position (kb) 488 489Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7 8 9 10at 487.282 kb on - strand, within MPMX20_00470at 487.326 kb on + strand, within MPMX20_00470at 487.334 kb on - strand, within MPMX20_00470at 487.335 kb on - strand, within MPMX20_00470at 487.339 kb on - strand, within MPMX20_00470at 487.357 kb on - strand, within MPMX20_00470at 487.358 kb on + strand, within MPMX20_00470at 487.366 kb on - strand, within MPMX20_00470at 487.366 kb on - strand, within MPMX20_00470at 487.368 kb on - strand, within MPMX20_00470at 487.385 kb on + strand, within MPMX20_00470at 487.385 kb on + strand, within MPMX20_00470at 487.393 kb on - strand, within MPMX20_00470at 487.393 kb on - strand, within MPMX20_00470at 487.400 kb on + strand, within MPMX20_00470at 487.432 kb on + strand, within MPMX20_00470at 487.510 kb on + strand, within MPMX20_00470at 487.518 kb on - strand, within MPMX20_00470at 487.590 kb on + strand, within MPMX20_00470at 487.603 kb on + strand, within MPMX20_00470at 487.611 kb on - strand, within MPMX20_00470at 487.628 kb on - strand, within MPMX20_00470at 487.633 kb on - strand, within MPMX20_00470at 487.643 kb on + strand, within MPMX20_00470at 487.653 kb on + strand, within MPMX20_00470at 487.653 kb on + strand, within MPMX20_00470at 487.661 kb on - strand, within MPMX20_00470at 487.679 kb on - strand, within MPMX20_00470at 487.704 kb on + strand, within MPMX20_00470at 487.744 kb on - strand, within MPMX20_00470at 487.761 kb on - strand, within MPMX20_00470at 487.796 kb on - strand, within MPMX20_00470at 487.803 kb on + strand, within MPMX20_00470at 487.806 kb on + strand, within MPMX20_00470at 487.813 kb on + strand, within MPMX20_00470at 487.814 kb on - strand, within MPMX20_00470at 487.814 kb on - strand, within MPMX20_00470at 487.814 kb on - strand, within MPMX20_00470at 487.814 kb on - strand, within MPMX20_00470at 487.814 kb on - strand, within MPMX20_00470at 487.832 kb on + strand, within MPMX20_00470at 487.833 kb on + strand, within MPMX20_00470at 487.833 kb on + strand, within MPMX20_00470at 487.877 kb on + strand, within MPMX20_00470at 487.908 kb on - strand, within MPMX20_00470at 487.908 kb on - strand, within MPMX20_00470at 487.915 kb on + strand, within MPMX20_00470at 487.915 kb on + strand, within MPMX20_00470at 487.921 kb on + strand, within MPMX20_00470at 487.923 kb on - strand, within MPMX20_00470at 487.995 kb on + strand, within MPMX20_00470at 487.999 kb on + strand, within MPMX20_00470at 488.075 kb on + strand, within MPMX20_00470at 488.082 kb on - strand, within MPMX20_00470at 488.092 kb on + strand, within MPMX20_00470at 488.114 kb on + strand, within MPMX20_00470at 488.115 kb on + strand, within MPMX20_00470at 488.115 kb on + strand, within MPMX20_00470at 488.121 kb on + strandat 488.123 kb on - strandat 488.123 kb on - strandat 488.136 kb on + strandat 488.141 kb on + strandat 488.169 kb on + strandat 488.177 kb on - strandat 488.275 kb on + strandat 488.275 kb on + strandat 488.283 kb on - strandat 488.283 kb on - strandat 488.287 kb on - strandat 488.289 kb on + strandat 488.291 kb on + strandat 488.301 kb on + strand, within MPMX20_00471at 488.301 kb on + strand, within MPMX20_00471at 488.301 kb on + strand, within MPMX20_00471at 488.301 kb on + strand, within MPMX20_00471at 488.301 kb on + strand, within MPMX20_00471at 488.309 kb on - strand, within MPMX20_00471at 488.354 kb on + strand, within MPMX20_00471at 488.366 kb on - strand, within MPMX20_00471at 488.373 kb on + strand, within MPMX20_00471at 488.373 kb on + strand, within MPMX20_00471at 488.373 kb on + strand, within MPMX20_00471at 488.373 kb on + strand, within MPMX20_00471at 488.380 kb on + strand, within MPMX20_00471at 488.381 kb on - strand, within MPMX20_00471at 488.381 kb on - strand, within MPMX20_00471at 488.381 kb on - strand, within MPMX20_00471at 488.381 kb on - strand, within MPMX20_00471at 488.381 kb on - strand, within MPMX20_00471at 488.381 kb on - strand, within MPMX20_00471at 488.381 kb on - strand, within MPMX20_00471at 488.381 kb on - strand, within MPMX20_00471at 488.434 kb on + strand, within MPMX20_00471at 488.434 kb on + strand, within MPMX20_00471at 488.434 kb on + strand, within MPMX20_00471at 488.442 kb on - strand, within MPMX20_00471at 488.442 kb on - strand, within MPMX20_00471at 488.442 kb on - strand, within MPMX20_00471at 488.482 kb on + strand, within MPMX20_00471at 488.487 kb on + strand, within MPMX20_00471at 488.521 kb on + strand, within MPMX20_00471at 488.574 kb on + strandat 488.589 kb on - strandat 488.589 kb on - strandat 488.614 kb on + strandat 488.644 kb on + strand, within MPMX20_00472at 488.731 kb on + strand, within MPMX20_00472at 488.731 kb on + strand, within MPMX20_00472at 488.731 kb on + strand, within MPMX20_00472at 488.731 kb on + strand, within MPMX20_00472at 488.736 kb on + strand, within MPMX20_00472at 488.739 kb on - strand, within MPMX20_00472at 488.747 kb on - strand, within MPMX20_00472at 488.791 kb on + strand, within MPMX20_00472at 488.818 kb on + strand, within MPMX20_00472at 488.828 kb on + strand, within MPMX20_00472at 488.865 kb on + strand, within MPMX20_00472at 488.883 kb on - strand, within MPMX20_00472at 488.894 kb on - strand, within MPMX20_00472at 488.905 kb on - strand, within MPMX20_00472at 488.920 kb on + strand, within MPMX20_00472at 488.928 kb on - strand, within MPMX20_00472at 488.962 kb on - strand, within MPMX20_00472at 488.974 kb on - strand, within MPMX20_00472at 488.974 kb on - strand, within MPMX20_00472at 489.045 kb on + strandat 489.053 kb on - strandat 489.101 kb on - strandat 489.106 kb on - strandat 489.106 kb on - strandat 489.116 kb on - strandat 489.175 kb on - strand, within MPMX20_00473at 489.327 kb on - strand, within MPMX20_00473at 489.345 kb on + strand, within MPMX20_00473at 489.345 kb on + strand, within MPMX20_00473at 489.353 kb on - strand, within MPMX20_00473at 489.353 kb on - strand, within MPMX20_00473at 489.353 kb on - strand, within MPMX20_00473at 489.353 kb on - strand, within MPMX20_00473at 489.424 kb on - strand, within MPMX20_00473at 489.440 kb on - strand, within MPMX20_00473at 489.445 kb on - strand, within MPMX20_00473at 489.479 kb on + strand, within MPMX20_00473at 489.502 kb on + strand, within MPMX20_00473at 489.551 kb on + strand, within MPMX20_00473

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Paraburkholderia phenoluptrix CO2
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487,282 - MPMX20_00470 0.30 -0.5
487,326 + MPMX20_00470 0.34 +1.1
487,334 - MPMX20_00470 0.34 +2.1
487,335 - MPMX20_00470 0.34 +1.1
487,339 - MPMX20_00470 0.35 +0.9
487,357 - MPMX20_00470 0.36 -2.4
487,358 + MPMX20_00470 0.36 -1.3
487,366 - MPMX20_00470 0.36 +0.3
487,366 - MPMX20_00470 0.36 -1.2
487,368 - MPMX20_00470 0.37 +1.5
487,385 + MPMX20_00470 0.38 +3.1
487,385 + MPMX20_00470 0.38 -0.2
487,393 - MPMX20_00470 0.38 -0.3
487,393 - MPMX20_00470 0.38 -0.4
487,400 + MPMX20_00470 0.39 -1.9
487,432 + MPMX20_00470 0.41 +1.8
487,510 + MPMX20_00470 0.47 -0.8
487,518 - MPMX20_00470 0.47 -1.8
487,590 + MPMX20_00470 0.52 +0.1
487,603 + MPMX20_00470 0.53 +0.3
487,611 - MPMX20_00470 0.54 +1.0
487,628 - MPMX20_00470 0.55 -0.4
487,633 - MPMX20_00470 0.56 +2.1
487,643 + MPMX20_00470 0.56 -2.6
487,653 + MPMX20_00470 0.57 -0.8
487,653 + MPMX20_00470 0.57 -1.2
487,661 - MPMX20_00470 0.58 +2.0
487,679 - MPMX20_00470 0.59 +0.3
487,704 + MPMX20_00470 0.61 +0.2
487,744 - MPMX20_00470 0.63 -0.1
487,761 - MPMX20_00470 0.65 +1.0
487,796 - MPMX20_00470 0.67 -0.5
487,803 + MPMX20_00470 0.68 +1.1
487,806 + MPMX20_00470 0.68 +1.5
487,813 + MPMX20_00470 0.68 -0.1
487,814 - MPMX20_00470 0.68 -2.0
487,814 - MPMX20_00470 0.68 +0.3
487,814 - MPMX20_00470 0.68 +1.1
487,814 - MPMX20_00470 0.68 -1.4
487,814 - MPMX20_00470 0.68 +0.5
487,832 + MPMX20_00470 0.70 -0.9
487,833 + MPMX20_00470 0.70 +0.5
487,833 + MPMX20_00470 0.70 +0.2
487,877 + MPMX20_00470 0.73 +0.5
487,908 - MPMX20_00470 0.75 -1.1
487,908 - MPMX20_00470 0.75 +0.9
487,915 + MPMX20_00470 0.76 -0.5
487,915 + MPMX20_00470 0.76 -0.5
487,921 + MPMX20_00470 0.76 -0.6
487,923 - MPMX20_00470 0.76 -0.1
487,995 + MPMX20_00470 0.81 -1.1
487,999 + MPMX20_00470 0.82 -1.8
488,075 + MPMX20_00470 0.87 -0.2
488,082 - MPMX20_00470 0.88 -1.2
488,092 + MPMX20_00470 0.88 +0.8
488,114 + MPMX20_00470 0.90 -0.7
488,115 + MPMX20_00470 0.90 -2.0
488,115 + MPMX20_00470 0.90 +1.1
488,121 + +1.9
488,123 - -1.0
488,123 - +0.9
488,136 + -2.5
488,141 + +1.5
488,169 + -3.1
488,177 - +1.1
488,275 + +0.6
488,275 + +2.1
488,283 - -0.9
488,283 - +0.2
488,287 - +0.8
488,289 + +1.1
488,291 + -2.2
488,301 + MPMX20_00471 0.11 +0.3
488,301 + MPMX20_00471 0.11 +0.3
488,301 + MPMX20_00471 0.11 -0.5
488,301 + MPMX20_00471 0.11 -1.2
488,301 + MPMX20_00471 0.11 +0.8
488,309 - MPMX20_00471 0.13 -2.5
488,354 + MPMX20_00471 0.28 -0.2
488,366 - MPMX20_00471 0.32 +1.1
488,373 + MPMX20_00471 0.34 -0.2
488,373 + MPMX20_00471 0.34 +0.3
488,373 + MPMX20_00471 0.34 -1.1
488,373 + MPMX20_00471 0.34 +1.1
488,380 + MPMX20_00471 0.37 -1.6
488,381 - MPMX20_00471 0.37 -0.0
488,381 - MPMX20_00471 0.37 +0.8
488,381 - MPMX20_00471 0.37 +0.0
488,381 - MPMX20_00471 0.37 +0.3
488,381 - MPMX20_00471 0.37 -0.4
488,381 - MPMX20_00471 0.37 +0.4
488,381 - MPMX20_00471 0.37 +0.2
488,381 - MPMX20_00471 0.37 -1.5
488,434 + MPMX20_00471 0.54 -0.1
488,434 + MPMX20_00471 0.54 -0.2
488,434 + MPMX20_00471 0.54 -1.2
488,442 - MPMX20_00471 0.57 +2.0
488,442 - MPMX20_00471 0.57 -0.8
488,442 - MPMX20_00471 0.57 -0.4
488,482 + MPMX20_00471 0.70 -1.4
488,487 + MPMX20_00471 0.72 +10.2
488,521 + MPMX20_00471 0.83 -0.9
488,574 + +0.4
488,589 - -3.0
488,589 - +0.3
488,614 + -2.3
488,644 + MPMX20_00472 0.13 +0.5
488,731 + MPMX20_00472 0.32 +0.5
488,731 + MPMX20_00472 0.32 +2.3
488,731 + MPMX20_00472 0.32 -0.2
488,731 + MPMX20_00472 0.32 +2.1
488,736 + MPMX20_00472 0.33 +4.1
488,739 - MPMX20_00472 0.33 -2.5
488,747 - MPMX20_00472 0.35 +0.8
488,791 + MPMX20_00472 0.44 +0.9
488,818 + MPMX20_00472 0.50 -1.0
488,828 + MPMX20_00472 0.52 -0.1
488,865 + MPMX20_00472 0.60 -1.2
488,883 - MPMX20_00472 0.64 +2.1
488,894 - MPMX20_00472 0.66 +0.8
488,905 - MPMX20_00472 0.69 -1.2
488,920 + MPMX20_00472 0.72 -1.0
488,928 - MPMX20_00472 0.74 -1.3
488,962 - MPMX20_00472 0.81 -0.4
488,974 - MPMX20_00472 0.84 +1.5
488,974 - MPMX20_00472 0.84 -1.2
489,045 + -0.8
489,053 - -1.3
489,101 - -1.6
489,106 - +0.2
489,106 - +1.1
489,116 - -1.1
489,175 - MPMX20_00473 0.17 +1.5
489,327 - MPMX20_00473 0.40 +0.4
489,345 + MPMX20_00473 0.43 -0.1
489,345 + MPMX20_00473 0.43 -2.1
489,353 - MPMX20_00473 0.44 +1.5
489,353 - MPMX20_00473 0.44 +1.1
489,353 - MPMX20_00473 0.44 +1.5
489,353 - MPMX20_00473 0.44 -1.0
489,424 - MPMX20_00473 0.55 +1.3
489,440 - MPMX20_00473 0.58 +0.9
489,445 - MPMX20_00473 0.59 -0.2
489,479 + MPMX20_00473 0.64 -0.9
489,502 + MPMX20_00473 0.67 +0.9
489,551 + MPMX20_00473 0.75 -0.4

Or see this region's nucleotide sequence