Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00300

Experiment: M9 plate, 1:1 coculture with Paraburkholderia phenoluptrix CO2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00298 and MPMX20_00299 are separated by 10 nucleotidesMPMX20_00299 and MPMX20_00300 are separated by 84 nucleotidesMPMX20_00300 and MPMX20_00301 are separated by 30 nucleotides MPMX20_00298: MPMX20_00298 - putative fructose-bisphosphate aldolase, at 318,684 to 319,544 _00298 MPMX20_00299: MPMX20_00299 - hypothetical protein, at 319,555 to 320,241 _00299 MPMX20_00300: MPMX20_00300 - Ribose import binding protein RbsB, at 320,326 to 321,267 _00300 MPMX20_00301: MPMX20_00301 - Ribose import permease protein RbsC, at 321,298 to 322,293 _00301 Position (kb) 320 321 322Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 319.337 kb on + strand, within MPMX20_00298at 319.337 kb on + strand, within MPMX20_00298at 319.337 kb on + strand, within MPMX20_00298at 319.337 kb on + strand, within MPMX20_00298at 319.345 kb on - strand, within MPMX20_00298at 319.365 kb on + strand, within MPMX20_00298at 319.420 kb on + strand, within MPMX20_00298at 319.445 kb on - strand, within MPMX20_00298at 319.472 kb on + strandat 319.480 kb on - strandat 319.497 kb on + strandat 319.509 kb on - strandat 319.511 kb on + strandat 319.511 kb on + strandat 319.511 kb on + strandat 319.511 kb on + strandat 319.511 kb on + strandat 319.519 kb on - strandat 319.519 kb on - strandat 319.519 kb on - strandat 319.569 kb on + strandat 319.569 kb on + strandat 319.573 kb on + strandat 319.576 kb on - strandat 319.577 kb on - strandat 319.588 kb on + strandat 319.588 kb on + strandat 319.596 kb on - strandat 319.659 kb on - strand, within MPMX20_00299at 319.666 kb on + strand, within MPMX20_00299at 319.693 kb on - strand, within MPMX20_00299at 319.706 kb on - strand, within MPMX20_00299at 319.737 kb on + strand, within MPMX20_00299at 319.737 kb on - strand, within MPMX20_00299at 319.745 kb on - strand, within MPMX20_00299at 319.745 kb on - strand, within MPMX20_00299at 319.767 kb on - strand, within MPMX20_00299at 319.773 kb on + strand, within MPMX20_00299at 319.798 kb on + strand, within MPMX20_00299at 319.798 kb on + strand, within MPMX20_00299at 319.798 kb on + strand, within MPMX20_00299at 319.799 kb on - strand, within MPMX20_00299at 319.806 kb on - strand, within MPMX20_00299at 319.806 kb on - strand, within MPMX20_00299at 319.806 kb on - strand, within MPMX20_00299at 319.806 kb on - strand, within MPMX20_00299at 319.806 kb on - strand, within MPMX20_00299at 319.806 kb on - strand, within MPMX20_00299at 319.811 kb on - strand, within MPMX20_00299at 319.940 kb on + strand, within MPMX20_00299at 319.943 kb on - strand, within MPMX20_00299at 319.955 kb on + strand, within MPMX20_00299at 320.025 kb on + strand, within MPMX20_00299at 320.025 kb on + strand, within MPMX20_00299at 320.025 kb on + strand, within MPMX20_00299at 320.026 kb on + strand, within MPMX20_00299at 320.033 kb on - strand, within MPMX20_00299at 320.034 kb on - strand, within MPMX20_00299at 320.034 kb on - strand, within MPMX20_00299at 320.042 kb on - strand, within MPMX20_00299at 320.043 kb on - strand, within MPMX20_00299at 320.073 kb on - strand, within MPMX20_00299at 320.085 kb on + strand, within MPMX20_00299at 320.093 kb on - strand, within MPMX20_00299at 320.132 kb on - strand, within MPMX20_00299at 320.132 kb on - strand, within MPMX20_00299at 320.148 kb on + strand, within MPMX20_00299at 320.164 kb on + strand, within MPMX20_00299at 320.178 kb on - strandat 320.202 kb on - strandat 320.248 kb on + strandat 320.256 kb on - strandat 320.270 kb on + strandat 320.278 kb on - strandat 320.300 kb on + strandat 320.331 kb on + strandat 320.336 kb on + strandat 320.344 kb on - strandat 320.399 kb on - strandat 320.558 kb on - strand, within MPMX20_00300at 320.589 kb on + strand, within MPMX20_00300at 320.663 kb on - strand, within MPMX20_00300at 320.670 kb on + strand, within MPMX20_00300at 320.770 kb on + strand, within MPMX20_00300at 320.770 kb on + strand, within MPMX20_00300at 320.770 kb on + strand, within MPMX20_00300at 320.778 kb on - strand, within MPMX20_00300at 320.778 kb on - strand, within MPMX20_00300at 320.793 kb on - strand, within MPMX20_00300at 320.816 kb on + strand, within MPMX20_00300at 320.869 kb on + strand, within MPMX20_00300at 320.887 kb on + strand, within MPMX20_00300at 321.007 kb on + strand, within MPMX20_00300at 321.073 kb on - strand, within MPMX20_00300at 321.080 kb on + strand, within MPMX20_00300at 321.100 kb on - strand, within MPMX20_00300at 321.149 kb on + strand, within MPMX20_00300at 321.176 kb on - strandat 321.176 kb on - strandat 321.184 kb on - strandat 321.199 kb on - strandat 321.236 kb on - strandat 321.236 kb on - strandat 321.295 kb on - strandat 321.357 kb on - strandat 321.357 kb on - strandat 321.405 kb on - strand, within MPMX20_00301at 321.425 kb on + strand, within MPMX20_00301at 321.437 kb on + strand, within MPMX20_00301at 321.521 kb on - strand, within MPMX20_00301at 321.532 kb on + strand, within MPMX20_00301at 321.540 kb on - strand, within MPMX20_00301at 321.548 kb on + strand, within MPMX20_00301at 321.553 kb on + strand, within MPMX20_00301at 321.553 kb on + strand, within MPMX20_00301at 321.559 kb on - strand, within MPMX20_00301at 321.561 kb on - strand, within MPMX20_00301at 321.561 kb on - strand, within MPMX20_00301at 321.561 kb on - strand, within MPMX20_00301at 321.585 kb on + strand, within MPMX20_00301at 321.588 kb on - strand, within MPMX20_00301at 321.588 kb on - strand, within MPMX20_00301at 321.595 kb on - strand, within MPMX20_00301at 321.636 kb on + strand, within MPMX20_00301at 321.637 kb on - strand, within MPMX20_00301at 321.637 kb on - strand, within MPMX20_00301at 321.670 kb on + strand, within MPMX20_00301at 321.717 kb on - strand, within MPMX20_00301at 321.717 kb on - strand, within MPMX20_00301at 321.732 kb on - strand, within MPMX20_00301at 321.824 kb on + strand, within MPMX20_00301at 321.830 kb on - strand, within MPMX20_00301at 321.861 kb on + strand, within MPMX20_00301at 321.861 kb on + strand, within MPMX20_00301at 321.864 kb on - strand, within MPMX20_00301at 321.871 kb on - strand, within MPMX20_00301at 321.879 kb on - strand, within MPMX20_00301at 321.885 kb on + strand, within MPMX20_00301at 321.923 kb on + strand, within MPMX20_00301at 321.931 kb on - strand, within MPMX20_00301at 321.935 kb on + strand, within MPMX20_00301at 321.939 kb on + strand, within MPMX20_00301at 321.942 kb on - strand, within MPMX20_00301at 321.945 kb on + strand, within MPMX20_00301at 322.040 kb on - strand, within MPMX20_00301at 322.080 kb on - strand, within MPMX20_00301at 322.124 kb on + strand, within MPMX20_00301at 322.124 kb on + strand, within MPMX20_00301at 322.132 kb on - strand, within MPMX20_00301at 322.197 kb on - strandat 322.213 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Paraburkholderia phenoluptrix CO2
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319,337 + MPMX20_00298 0.76 -1.5
319,337 + MPMX20_00298 0.76 -0.5
319,337 + MPMX20_00298 0.76 +0.2
319,337 + MPMX20_00298 0.76 +0.2
319,345 - MPMX20_00298 0.77 -1.1
319,365 + MPMX20_00298 0.79 -1.7
319,420 + MPMX20_00298 0.85 +1.0
319,445 - MPMX20_00298 0.88 +1.1
319,472 + -1.1
319,480 - +0.7
319,497 + -0.3
319,509 - +0.0
319,511 + +1.8
319,511 + -0.2
319,511 + +0.3
319,511 + +0.2
319,511 + +1.0
319,519 - +2.0
319,519 - -0.4
319,519 - -1.1
319,569 + +2.0
319,569 + -1.7
319,573 + -0.9
319,576 - +1.5
319,577 - -0.5
319,588 + +1.0
319,588 + -0.5
319,596 - +0.9
319,659 - MPMX20_00299 0.15 +0.2
319,666 + MPMX20_00299 0.16 +2.5
319,693 - MPMX20_00299 0.20 +1.2
319,706 - MPMX20_00299 0.22 +0.0
319,737 + MPMX20_00299 0.26 -1.1
319,737 - MPMX20_00299 0.26 +0.7
319,745 - MPMX20_00299 0.28 -2.5
319,745 - MPMX20_00299 0.28 +1.0
319,767 - MPMX20_00299 0.31 -1.2
319,773 + MPMX20_00299 0.32 +1.3
319,798 + MPMX20_00299 0.35 -1.2
319,798 + MPMX20_00299 0.35 +1.0
319,798 + MPMX20_00299 0.35 +1.6
319,799 - MPMX20_00299 0.36 -0.1
319,806 - MPMX20_00299 0.37 -1.0
319,806 - MPMX20_00299 0.37 -0.3
319,806 - MPMX20_00299 0.37 +0.2
319,806 - MPMX20_00299 0.37 -0.4
319,806 - MPMX20_00299 0.37 -0.9
319,806 - MPMX20_00299 0.37 -1.6
319,811 - MPMX20_00299 0.37 -1.3
319,940 + MPMX20_00299 0.56 -0.1
319,943 - MPMX20_00299 0.56 +0.7
319,955 + MPMX20_00299 0.58 +1.5
320,025 + MPMX20_00299 0.68 +0.2
320,025 + MPMX20_00299 0.68 -0.7
320,025 + MPMX20_00299 0.68 +0.2
320,026 + MPMX20_00299 0.69 -1.1
320,033 - MPMX20_00299 0.70 -1.3
320,034 - MPMX20_00299 0.70 -1.2
320,034 - MPMX20_00299 0.70 +0.2
320,042 - MPMX20_00299 0.71 -2.2
320,043 - MPMX20_00299 0.71 -1.3
320,073 - MPMX20_00299 0.75 -1.8
320,085 + MPMX20_00299 0.77 -0.6
320,093 - MPMX20_00299 0.78 -0.5
320,132 - MPMX20_00299 0.84 -2.2
320,132 - MPMX20_00299 0.84 +1.1
320,148 + MPMX20_00299 0.86 +0.7
320,164 + MPMX20_00299 0.89 +2.0
320,178 - -1.3
320,202 - -0.2
320,248 + -1.0
320,256 - +1.5
320,270 + -0.1
320,278 - -1.1
320,300 + -0.8
320,331 + -0.3
320,336 + -2.3
320,344 - -0.0
320,399 - -0.3
320,558 - MPMX20_00300 0.25 -0.8
320,589 + MPMX20_00300 0.28 +5.3
320,663 - MPMX20_00300 0.36 +0.7
320,670 + MPMX20_00300 0.37 +0.7
320,770 + MPMX20_00300 0.47 +1.5
320,770 + MPMX20_00300 0.47 -0.4
320,770 + MPMX20_00300 0.47 +0.3
320,778 - MPMX20_00300 0.48 -1.1
320,778 - MPMX20_00300 0.48 -1.7
320,793 - MPMX20_00300 0.50 +0.5
320,816 + MPMX20_00300 0.52 +0.7
320,869 + MPMX20_00300 0.58 -2.0
320,887 + MPMX20_00300 0.60 -1.9
321,007 + MPMX20_00300 0.72 -1.3
321,073 - MPMX20_00300 0.79 -1.2
321,080 + MPMX20_00300 0.80 +1.0
321,100 - MPMX20_00300 0.82 -1.0
321,149 + MPMX20_00300 0.87 +1.1
321,176 - -1.0
321,176 - +0.6
321,184 - +0.2
321,199 - -1.6
321,236 - -0.8
321,236 - -1.1
321,295 - -0.9
321,357 - +0.7
321,357 - -0.1
321,405 - MPMX20_00301 0.11 +3.0
321,425 + MPMX20_00301 0.13 +1.0
321,437 + MPMX20_00301 0.14 -1.3
321,521 - MPMX20_00301 0.22 +1.5
321,532 + MPMX20_00301 0.23 -1.0
321,540 - MPMX20_00301 0.24 -0.9
321,548 + MPMX20_00301 0.25 -0.5
321,553 + MPMX20_00301 0.26 +1.2
321,553 + MPMX20_00301 0.26 -1.7
321,559 - MPMX20_00301 0.26 -0.3
321,561 - MPMX20_00301 0.26 -1.1
321,561 - MPMX20_00301 0.26 -0.3
321,561 - MPMX20_00301 0.26 -0.5
321,585 + MPMX20_00301 0.29 +3.7
321,588 - MPMX20_00301 0.29 +0.9
321,588 - MPMX20_00301 0.29 +3.0
321,595 - MPMX20_00301 0.30 +1.0
321,636 + MPMX20_00301 0.34 +2.0
321,637 - MPMX20_00301 0.34 +0.0
321,637 - MPMX20_00301 0.34 -1.4
321,670 + MPMX20_00301 0.37 -1.6
321,717 - MPMX20_00301 0.42 +3.0
321,717 - MPMX20_00301 0.42 -0.8
321,732 - MPMX20_00301 0.44 -0.4
321,824 + MPMX20_00301 0.53 -2.3
321,830 - MPMX20_00301 0.53 +0.2
321,861 + MPMX20_00301 0.57 +0.5
321,861 + MPMX20_00301 0.57 +0.6
321,864 - MPMX20_00301 0.57 -0.1
321,871 - MPMX20_00301 0.58 -0.9
321,879 - MPMX20_00301 0.58 -2.2
321,885 + MPMX20_00301 0.59 +1.2
321,923 + MPMX20_00301 0.63 +2.6
321,931 - MPMX20_00301 0.64 -0.5
321,935 + MPMX20_00301 0.64 +1.2
321,939 + MPMX20_00301 0.64 -0.1
321,942 - MPMX20_00301 0.65 +3.5
321,945 + MPMX20_00301 0.65 -0.8
322,040 - MPMX20_00301 0.74 +0.0
322,080 - MPMX20_00301 0.79 -1.9
322,124 + MPMX20_00301 0.83 +1.2
322,124 + MPMX20_00301 0.83 -2.9
322,132 - MPMX20_00301 0.84 -0.1
322,197 - -1.4
322,213 - +2.0

Or see this region's nucleotide sequence