Experiment: M9 plate, 1:1 coculture with Paraburkholderia phenoluptrix CO2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_00281 and MPMX20_00282 are separated by 98 nucleotides MPMX20_00282 and MPMX20_00283 are separated by 302 nucleotides MPMX20_00283 and MPMX20_00284 are separated by 296 nucleotides
MPMX20_00281: MPMX20_00281 - Regulatory protein SoxS, at 300,287 to 300,613
_00281
MPMX20_00282: MPMX20_00282 - Redox-sensitive transcriptional activator SoxR, at 300,712 to 301,170
_00282
MPMX20_00283: MPMX20_00283 - hypothetical protein, at 301,473 to 302,144
_00283
MPMX20_00284: MPMX20_00284 - Guanine/hypoxanthine permease GhxP, at 302,441 to 303,790
_00284
Position (kb) 301
302
303 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 300.473 kb on + strand, within MPMX20_00281 at 300.481 kb on - strand, within MPMX20_00281 at 300.538 kb on + strand, within MPMX20_00281 at 300.545 kb on + strand, within MPMX20_00281 at 300.545 kb on + strand, within MPMX20_00281 at 300.551 kb on - strand, within MPMX20_00281 at 300.565 kb on - strand, within MPMX20_00281 at 300.610 kb on + strand at 300.618 kb on - strand at 300.624 kb on - strand at 300.631 kb on - strand at 300.634 kb on - strand at 300.635 kb on + strand at 300.640 kb on + strand at 300.640 kb on + strand at 300.643 kb on - strand at 300.776 kb on + strand, within MPMX20_00282 at 300.784 kb on - strand, within MPMX20_00282 at 300.784 kb on - strand, within MPMX20_00282 at 300.805 kb on - strand, within MPMX20_00282 at 300.853 kb on + strand, within MPMX20_00282 at 300.881 kb on - strand, within MPMX20_00282 at 300.916 kb on + strand, within MPMX20_00282 at 300.924 kb on - strand, within MPMX20_00282 at 300.965 kb on + strand, within MPMX20_00282 at 300.971 kb on + strand, within MPMX20_00282 at 300.979 kb on - strand, within MPMX20_00282 at 300.979 kb on - strand, within MPMX20_00282 at 300.998 kb on - strand, within MPMX20_00282 at 301.003 kb on - strand, within MPMX20_00282 at 301.067 kb on - strand, within MPMX20_00282 at 301.102 kb on - strand, within MPMX20_00282 at 301.125 kb on + strand at 301.172 kb on - strand at 301.202 kb on - strand at 301.266 kb on + strand at 301.285 kb on - strand at 301.287 kb on + strand at 301.300 kb on + strand at 301.300 kb on + strand at 301.310 kb on + strand at 301.331 kb on - strand at 301.334 kb on + strand at 301.334 kb on + strand at 301.342 kb on - strand at 301.353 kb on + strand at 301.475 kb on + strand at 301.476 kb on - strand at 301.489 kb on + strand at 301.489 kb on + strand at 301.489 kb on + strand at 301.497 kb on - strand at 301.497 kb on - strand at 301.497 kb on - strand at 301.499 kb on + strand at 301.499 kb on + strand at 301.499 kb on + strand at 301.542 kb on - strand, within MPMX20_00283 at 301.591 kb on - strand, within MPMX20_00283 at 301.664 kb on + strand, within MPMX20_00283 at 301.672 kb on - strand, within MPMX20_00283 at 301.672 kb on - strand, within MPMX20_00283 at 301.702 kb on + strand, within MPMX20_00283 at 301.715 kb on + strand, within MPMX20_00283 at 301.715 kb on + strand, within MPMX20_00283 at 301.715 kb on + strand, within MPMX20_00283 at 301.723 kb on - strand, within MPMX20_00283 at 301.723 kb on - strand, within MPMX20_00283 at 301.723 kb on - strand, within MPMX20_00283 at 301.723 kb on - strand, within MPMX20_00283 at 301.730 kb on - strand, within MPMX20_00283 at 301.732 kb on - strand, within MPMX20_00283 at 301.801 kb on - strand, within MPMX20_00283 at 301.867 kb on - strand, within MPMX20_00283 at 301.867 kb on - strand, within MPMX20_00283 at 301.924 kb on + strand, within MPMX20_00283 at 301.989 kb on + strand, within MPMX20_00283 at 302.042 kb on + strand, within MPMX20_00283 at 302.050 kb on - strand, within MPMX20_00283 at 302.060 kb on - strand, within MPMX20_00283 at 302.083 kb on + strand at 302.091 kb on - strand at 302.317 kb on - strand at 302.397 kb on - strand at 302.443 kb on + strand at 302.503 kb on + strand at 302.503 kb on + strand at 302.503 kb on + strand at 302.509 kb on - strand at 302.511 kb on - strand at 302.511 kb on - strand at 302.534 kb on + strand at 302.557 kb on + strand at 302.557 kb on + strand at 302.565 kb on - strand at 302.585 kb on + strand, within MPMX20_00284 at 302.590 kb on + strand, within MPMX20_00284 at 302.598 kb on - strand, within MPMX20_00284 at 302.726 kb on - strand, within MPMX20_00284 at 302.749 kb on + strand, within MPMX20_00284 at 302.757 kb on - strand, within MPMX20_00284 at 302.808 kb on - strand, within MPMX20_00284 at 302.994 kb on + strand, within MPMX20_00284 at 303.062 kb on - strand, within MPMX20_00284 at 303.069 kb on + strand, within MPMX20_00284 at 303.077 kb on - strand, within MPMX20_00284 at 303.079 kb on + strand, within MPMX20_00284 at 303.115 kb on + strand, within MPMX20_00284
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Paraburkholderia phenoluptrix CO2 remove 300,473 + MPMX20_00281 0.57 -0.3 300,481 - MPMX20_00281 0.59 +3.2 300,538 + MPMX20_00281 0.77 -0.5 300,545 + MPMX20_00281 0.79 +2.3 300,545 + MPMX20_00281 0.79 -0.3 300,551 - MPMX20_00281 0.81 -0.5 300,565 - MPMX20_00281 0.85 +0.7 300,610 + -1.1 300,618 - -1.3 300,624 - +0.7 300,631 - -0.4 300,634 - -0.8 300,635 + +1.9 300,640 + -0.5 300,640 + -2.3 300,643 - -1.8 300,776 + MPMX20_00282 0.14 +0.4 300,784 - MPMX20_00282 0.16 +1.5 300,784 - MPMX20_00282 0.16 -0.1 300,805 - MPMX20_00282 0.20 +0.5 300,853 + MPMX20_00282 0.31 -2.0 300,881 - MPMX20_00282 0.37 -1.5 300,916 + MPMX20_00282 0.44 -0.3 300,924 - MPMX20_00282 0.46 -0.4 300,965 + MPMX20_00282 0.55 +0.6 300,971 + MPMX20_00282 0.56 +0.6 300,979 - MPMX20_00282 0.58 -1.4 300,979 - MPMX20_00282 0.58 +1.5 300,998 - MPMX20_00282 0.62 +0.2 301,003 - MPMX20_00282 0.63 -0.8 301,067 - MPMX20_00282 0.77 -0.2 301,102 - MPMX20_00282 0.85 -1.0 301,125 + -1.7 301,172 - +0.5 301,202 - +0.5 301,266 + +1.7 301,285 - -0.7 301,287 + -0.1 301,300 + +0.0 301,300 + -0.4 301,310 + -2.0 301,331 - +1.5 301,334 + -1.6 301,334 + -0.2 301,342 - +1.7 301,353 + -2.8 301,475 + -2.2 301,476 - +1.0 301,489 + +0.6 301,489 + -0.2 301,489 + -2.6 301,497 - +1.3 301,497 - -1.6 301,497 - +2.2 301,499 + -0.4 301,499 + +0.2 301,499 + -0.5 301,542 - MPMX20_00283 0.10 +0.5 301,591 - MPMX20_00283 0.18 +0.7 301,664 + MPMX20_00283 0.28 +0.5 301,672 - MPMX20_00283 0.30 +0.2 301,672 - MPMX20_00283 0.30 -1.0 301,702 + MPMX20_00283 0.34 +0.5 301,715 + MPMX20_00283 0.36 -1.3 301,715 + MPMX20_00283 0.36 -1.6 301,715 + MPMX20_00283 0.36 +5.3 301,723 - MPMX20_00283 0.37 -0.3 301,723 - MPMX20_00283 0.37 +1.0 301,723 - MPMX20_00283 0.37 -0.9 301,723 - MPMX20_00283 0.37 +0.0 301,730 - MPMX20_00283 0.38 +2.0 301,732 - MPMX20_00283 0.39 +1.8 301,801 - MPMX20_00283 0.49 -0.2 301,867 - MPMX20_00283 0.59 +0.9 301,867 - MPMX20_00283 0.59 +3.0 301,924 + MPMX20_00283 0.67 +0.0 301,989 + MPMX20_00283 0.77 +1.0 302,042 + MPMX20_00283 0.85 +4.0 302,050 - MPMX20_00283 0.86 +2.7 302,060 - MPMX20_00283 0.87 +2.0 302,083 + -1.0 302,091 - -0.2 302,317 - +1.1 302,397 - +0.5 302,443 + -2.4 302,503 + -0.5 302,503 + -0.1 302,503 + -1.1 302,509 - +0.8 302,511 - -0.8 302,511 - +0.2 302,534 + +0.0 302,557 + -1.0 302,557 + -1.1 302,565 - +0.2 302,585 + MPMX20_00284 0.11 +1.0 302,590 + MPMX20_00284 0.11 -1.2 302,598 - MPMX20_00284 0.12 +1.8 302,726 - MPMX20_00284 0.21 -1.6 302,749 + MPMX20_00284 0.23 +0.5 302,757 - MPMX20_00284 0.23 -1.5 302,808 - MPMX20_00284 0.27 -1.3 302,994 + MPMX20_00284 0.41 -0.8 303,062 - MPMX20_00284 0.46 -0.8 303,069 + MPMX20_00284 0.47 -0.1 303,077 - MPMX20_00284 0.47 +2.0 303,079 + MPMX20_00284 0.47 +0.0 303,115 + MPMX20_00284 0.50 -0.4
Or see this region's nucleotide sequence