Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00261

Experiment: M9 plate, 1:1 coculture with Paraburkholderia phenoluptrix CO2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00260 and MPMX20_00261 are separated by 119 nucleotidesMPMX20_00261 and MPMX20_00262 are separated by 48 nucleotidesMPMX20_00262 and MPMX20_00263 are separated by 115 nucleotides MPMX20_00260: MPMX20_00260 - DNA damage-inducible protein F, at 278,312 to 279,649 _00260 MPMX20_00261: MPMX20_00261 - hypothetical protein, at 279,769 to 279,978 _00261 MPMX20_00262: MPMX20_00262 - Zinc uptake regulation protein, at 280,027 to 280,539 _00262 MPMX20_00263: MPMX20_00263 - hypothetical protein, at 280,655 to 281,143 _00263 Position (kb) 279 280Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 278.777 kb on + strand, within MPMX20_00260at 278.785 kb on - strand, within MPMX20_00260at 278.848 kb on + strand, within MPMX20_00260at 278.903 kb on + strand, within MPMX20_00260at 278.935 kb on + strand, within MPMX20_00260at 278.943 kb on - strand, within MPMX20_00260at 278.943 kb on - strand, within MPMX20_00260at 278.946 kb on + strand, within MPMX20_00260at 278.977 kb on + strand, within MPMX20_00260at 278.985 kb on - strand, within MPMX20_00260at 278.985 kb on - strand, within MPMX20_00260at 279.030 kb on + strand, within MPMX20_00260at 279.053 kb on - strand, within MPMX20_00260at 279.144 kb on + strand, within MPMX20_00260at 279.182 kb on + strand, within MPMX20_00260at 279.202 kb on + strand, within MPMX20_00260at 279.211 kb on - strand, within MPMX20_00260at 279.212 kb on - strand, within MPMX20_00260at 279.261 kb on + strand, within MPMX20_00260at 279.269 kb on - strand, within MPMX20_00260at 279.292 kb on + strand, within MPMX20_00260at 279.292 kb on + strand, within MPMX20_00260at 279.300 kb on - strand, within MPMX20_00260at 279.339 kb on + strand, within MPMX20_00260at 279.450 kb on + strand, within MPMX20_00260at 279.450 kb on + strand, within MPMX20_00260at 279.450 kb on + strand, within MPMX20_00260at 279.450 kb on + strand, within MPMX20_00260at 279.458 kb on - strand, within MPMX20_00260at 279.458 kb on - strand, within MPMX20_00260at 279.494 kb on + strand, within MPMX20_00260at 279.494 kb on + strand, within MPMX20_00260at 279.496 kb on - strand, within MPMX20_00260at 279.505 kb on + strand, within MPMX20_00260at 279.584 kb on + strandat 279.619 kb on - strandat 279.747 kb on + strandat 279.774 kb on - strandat 279.794 kb on + strand, within MPMX20_00261at 279.804 kb on + strand, within MPMX20_00261at 279.812 kb on - strand, within MPMX20_00261at 279.812 kb on - strand, within MPMX20_00261at 279.812 kb on - strand, within MPMX20_00261at 279.812 kb on - strand, within MPMX20_00261at 279.812 kb on - strand, within MPMX20_00261at 279.818 kb on + strand, within MPMX20_00261at 279.837 kb on + strand, within MPMX20_00261at 279.837 kb on + strand, within MPMX20_00261at 279.837 kb on + strand, within MPMX20_00261at 279.904 kb on + strand, within MPMX20_00261at 279.904 kb on + strand, within MPMX20_00261at 279.904 kb on + strand, within MPMX20_00261at 279.912 kb on - strand, within MPMX20_00261at 280.040 kb on + strandat 280.050 kb on + strandat 280.098 kb on - strand, within MPMX20_00262at 280.213 kb on - strand, within MPMX20_00262at 280.221 kb on - strand, within MPMX20_00262at 280.284 kb on + strand, within MPMX20_00262at 280.292 kb on - strand, within MPMX20_00262at 280.292 kb on - strand, within MPMX20_00262at 280.402 kb on - strand, within MPMX20_00262at 280.404 kb on + strand, within MPMX20_00262at 280.428 kb on + strand, within MPMX20_00262at 280.436 kb on - strand, within MPMX20_00262at 280.491 kb on - strandat 280.497 kb on + strandat 280.505 kb on - strandat 280.531 kb on - strandat 280.546 kb on + strandat 280.554 kb on + strandat 280.562 kb on - strandat 280.576 kb on + strandat 280.607 kb on + strandat 280.617 kb on + strandat 280.617 kb on + strandat 280.617 kb on + strandat 280.617 kb on + strandat 280.617 kb on + strandat 280.617 kb on + strandat 280.617 kb on + strandat 280.617 kb on + strandat 280.617 kb on + strandat 280.617 kb on + strandat 280.617 kb on + strandat 280.625 kb on - strandat 280.625 kb on - strandat 280.625 kb on - strandat 280.625 kb on - strandat 280.625 kb on - strandat 280.625 kb on - strandat 280.625 kb on - strandat 280.627 kb on - strandat 280.628 kb on + strandat 280.670 kb on - strandat 280.673 kb on + strandat 280.751 kb on + strand, within MPMX20_00263at 280.780 kb on + strand, within MPMX20_00263at 280.784 kb on + strand, within MPMX20_00263at 280.792 kb on - strand, within MPMX20_00263at 280.821 kb on + strand, within MPMX20_00263at 280.821 kb on + strand, within MPMX20_00263at 280.829 kb on - strand, within MPMX20_00263at 280.855 kb on + strand, within MPMX20_00263at 280.868 kb on + strand, within MPMX20_00263at 280.868 kb on + strand, within MPMX20_00263at 280.876 kb on - strand, within MPMX20_00263at 280.878 kb on + strand, within MPMX20_00263at 280.919 kb on - strand, within MPMX20_00263at 280.929 kb on + strand, within MPMX20_00263at 280.936 kb on - strand, within MPMX20_00263at 280.959 kb on + strand, within MPMX20_00263at 280.959 kb on + strand, within MPMX20_00263at 280.959 kb on + strand, within MPMX20_00263at 280.959 kb on + strand, within MPMX20_00263at 280.959 kb on + strand, within MPMX20_00263at 280.959 kb on + strand, within MPMX20_00263at 280.966 kb on - strand, within MPMX20_00263at 280.967 kb on - strand, within MPMX20_00263at 280.967 kb on - strand, within MPMX20_00263

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Paraburkholderia phenoluptrix CO2
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278,777 + MPMX20_00260 0.35 +2.5
278,785 - MPMX20_00260 0.35 +0.7
278,848 + MPMX20_00260 0.40 -0.3
278,903 + MPMX20_00260 0.44 -0.0
278,935 + MPMX20_00260 0.47 +2.5
278,943 - MPMX20_00260 0.47 +0.5
278,943 - MPMX20_00260 0.47 +0.1
278,946 + MPMX20_00260 0.47 +1.1
278,977 + MPMX20_00260 0.50 -0.5
278,985 - MPMX20_00260 0.50 +0.2
278,985 - MPMX20_00260 0.50 -0.8
279,030 + MPMX20_00260 0.54 +3.1
279,053 - MPMX20_00260 0.55 -0.6
279,144 + MPMX20_00260 0.62 -0.2
279,182 + MPMX20_00260 0.65 +0.3
279,202 + MPMX20_00260 0.67 -1.1
279,211 - MPMX20_00260 0.67 -0.6
279,212 - MPMX20_00260 0.67 -2.4
279,261 + MPMX20_00260 0.71 +0.5
279,269 - MPMX20_00260 0.72 -0.5
279,292 + MPMX20_00260 0.73 +1.5
279,292 + MPMX20_00260 0.73 -1.1
279,300 - MPMX20_00260 0.74 +0.1
279,339 + MPMX20_00260 0.77 -0.5
279,450 + MPMX20_00260 0.85 +1.1
279,450 + MPMX20_00260 0.85 +0.7
279,450 + MPMX20_00260 0.85 -0.4
279,450 + MPMX20_00260 0.85 -1.3
279,458 - MPMX20_00260 0.86 -0.3
279,458 - MPMX20_00260 0.86 -1.0
279,494 + MPMX20_00260 0.88 +2.5
279,494 + MPMX20_00260 0.88 -0.1
279,496 - MPMX20_00260 0.88 -0.5
279,505 + MPMX20_00260 0.89 +1.5
279,584 + +0.7
279,619 - +2.6
279,747 + -1.5
279,774 - +1.5
279,794 + MPMX20_00261 0.12 -1.2
279,804 + MPMX20_00261 0.17 +2.4
279,812 - MPMX20_00261 0.20 -1.5
279,812 - MPMX20_00261 0.20 +2.1
279,812 - MPMX20_00261 0.20 -1.6
279,812 - MPMX20_00261 0.20 +0.1
279,812 - MPMX20_00261 0.20 -1.2
279,818 + MPMX20_00261 0.23 -1.7
279,837 + MPMX20_00261 0.32 +0.1
279,837 + MPMX20_00261 0.32 -0.6
279,837 + MPMX20_00261 0.32 -0.4
279,904 + MPMX20_00261 0.64 +3.4
279,904 + MPMX20_00261 0.64 -1.5
279,904 + MPMX20_00261 0.64 +1.2
279,912 - MPMX20_00261 0.68 -0.1
280,040 + -0.9
280,050 + -1.0
280,098 - MPMX20_00262 0.14 -1.6
280,213 - MPMX20_00262 0.36 +1.1
280,221 - MPMX20_00262 0.38 -1.0
280,284 + MPMX20_00262 0.50 -1.2
280,292 - MPMX20_00262 0.52 +1.3
280,292 - MPMX20_00262 0.52 -2.2
280,402 - MPMX20_00262 0.73 +2.5
280,404 + MPMX20_00262 0.73 +0.1
280,428 + MPMX20_00262 0.78 -0.0
280,436 - MPMX20_00262 0.80 -0.1
280,491 - -0.8
280,497 + -1.0
280,505 - -1.9
280,531 - -0.9
280,546 + -1.6
280,554 + -0.2
280,562 - +0.7
280,576 + +0.1
280,607 + -1.5
280,617 + -1.3
280,617 + +0.5
280,617 + +0.0
280,617 + -2.4
280,617 + -1.0
280,617 + +0.2
280,617 + -0.5
280,617 + +0.5
280,617 + +1.0
280,617 + -0.1
280,617 + -3.3
280,625 - +1.5
280,625 - -0.4
280,625 - -1.1
280,625 - +3.6
280,625 - +1.5
280,625 - +0.9
280,625 - -0.5
280,627 - -1.4
280,628 + -0.3
280,670 - +0.7
280,673 + -1.4
280,751 + MPMX20_00263 0.20 -0.1
280,780 + MPMX20_00263 0.26 -0.2
280,784 + MPMX20_00263 0.26 +0.5
280,792 - MPMX20_00263 0.28 +1.5
280,821 + MPMX20_00263 0.34 -0.8
280,821 + MPMX20_00263 0.34 +0.1
280,829 - MPMX20_00263 0.36 +0.2
280,855 + MPMX20_00263 0.41 +0.2
280,868 + MPMX20_00263 0.44 -0.8
280,868 + MPMX20_00263 0.44 -1.5
280,876 - MPMX20_00263 0.45 +0.5
280,878 + MPMX20_00263 0.46 -0.1
280,919 - MPMX20_00263 0.54 +1.0
280,929 + MPMX20_00263 0.56 +1.3
280,936 - MPMX20_00263 0.57 +4.0
280,959 + MPMX20_00263 0.62 +1.0
280,959 + MPMX20_00263 0.62 +0.5
280,959 + MPMX20_00263 0.62 +0.1
280,959 + MPMX20_00263 0.62 -1.6
280,959 + MPMX20_00263 0.62 -1.0
280,959 + MPMX20_00263 0.62 +0.5
280,966 - MPMX20_00263 0.64 -2.0
280,967 - MPMX20_00263 0.64 +3.0
280,967 - MPMX20_00263 0.64 -1.0

Or see this region's nucleotide sequence