Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00166

Experiment: M9 plate, 1:1 coculture with Paraburkholderia phenoluptrix CO2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00165 and MPMX20_00166 are separated by 71 nucleotidesMPMX20_00166 and MPMX20_00167 are separated by 103 nucleotidesMPMX20_00167 and MPMX20_00168 overlap by 1 nucleotides MPMX20_00165: MPMX20_00165 - Xylose isomerase, at 171,015 to 172,400 _00165 MPMX20_00166: MPMX20_00166 - Xylulose kinase, at 172,472 to 173,926 _00166 MPMX20_00167: MPMX20_00167 - hypothetical protein, at 174,030 to 174,569 _00167 MPMX20_00168: MPMX20_00168 - HTH-type transcriptional regulator CdhR, at 174,569 to 175,489 _00168 Position (kb) 172 173 174Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 171.496 kb on - strand, within MPMX20_00165at 171.509 kb on - strand, within MPMX20_00165at 171.569 kb on - strand, within MPMX20_00165at 171.569 kb on - strand, within MPMX20_00165at 171.646 kb on + strand, within MPMX20_00165at 171.654 kb on - strand, within MPMX20_00165at 171.654 kb on - strand, within MPMX20_00165at 171.654 kb on - strand, within MPMX20_00165at 171.658 kb on + strand, within MPMX20_00165at 171.666 kb on - strand, within MPMX20_00165at 171.668 kb on + strand, within MPMX20_00165at 171.681 kb on - strand, within MPMX20_00165at 171.797 kb on - strand, within MPMX20_00165at 171.817 kb on + strand, within MPMX20_00165at 171.833 kb on - strand, within MPMX20_00165at 171.843 kb on - strand, within MPMX20_00165at 171.871 kb on - strand, within MPMX20_00165at 171.944 kb on + strand, within MPMX20_00165at 171.986 kb on + strand, within MPMX20_00165at 171.992 kb on - strand, within MPMX20_00165at 172.016 kb on - strand, within MPMX20_00165at 172.018 kb on + strand, within MPMX20_00165at 172.018 kb on + strand, within MPMX20_00165at 172.018 kb on + strand, within MPMX20_00165at 172.018 kb on + strand, within MPMX20_00165at 172.026 kb on - strand, within MPMX20_00165at 172.026 kb on - strand, within MPMX20_00165at 172.026 kb on - strand, within MPMX20_00165at 172.026 kb on - strand, within MPMX20_00165at 172.026 kb on - strand, within MPMX20_00165at 172.026 kb on - strand, within MPMX20_00165at 172.052 kb on + strand, within MPMX20_00165at 172.107 kb on + strand, within MPMX20_00165at 172.131 kb on - strand, within MPMX20_00165at 172.141 kb on - strand, within MPMX20_00165at 172.214 kb on + strand, within MPMX20_00165at 172.214 kb on + strand, within MPMX20_00165at 172.222 kb on - strand, within MPMX20_00165at 172.222 kb on - strand, within MPMX20_00165at 172.232 kb on + strand, within MPMX20_00165at 172.232 kb on + strand, within MPMX20_00165at 172.232 kb on + strand, within MPMX20_00165at 172.232 kb on + strand, within MPMX20_00165at 172.232 kb on + strand, within MPMX20_00165at 172.232 kb on + strand, within MPMX20_00165at 172.232 kb on + strand, within MPMX20_00165at 172.240 kb on - strand, within MPMX20_00165at 172.240 kb on - strand, within MPMX20_00165at 172.240 kb on - strand, within MPMX20_00165at 172.240 kb on - strand, within MPMX20_00165at 172.240 kb on - strand, within MPMX20_00165at 172.257 kb on - strand, within MPMX20_00165at 172.314 kb on + strandat 172.314 kb on + strandat 172.328 kb on - strandat 172.356 kb on - strandat 172.356 kb on - strandat 172.378 kb on + strandat 172.378 kb on + strandat 172.482 kb on + strandat 172.490 kb on - strandat 172.490 kb on - strandat 172.526 kb on + strandat 172.577 kb on - strandat 172.598 kb on - strandat 172.610 kb on - strandat 172.615 kb on - strandat 172.672 kb on + strand, within MPMX20_00166at 172.680 kb on - strand, within MPMX20_00166at 172.714 kb on - strand, within MPMX20_00166at 172.773 kb on + strand, within MPMX20_00166at 172.773 kb on + strand, within MPMX20_00166at 172.773 kb on + strand, within MPMX20_00166at 172.773 kb on + strand, within MPMX20_00166at 172.773 kb on + strand, within MPMX20_00166at 172.773 kb on + strand, within MPMX20_00166at 172.773 kb on + strand, within MPMX20_00166at 172.773 kb on + strand, within MPMX20_00166at 172.781 kb on - strand, within MPMX20_00166at 172.781 kb on - strand, within MPMX20_00166at 172.781 kb on - strand, within MPMX20_00166at 172.783 kb on - strand, within MPMX20_00166at 172.783 kb on - strand, within MPMX20_00166at 172.790 kb on + strand, within MPMX20_00166at 172.856 kb on + strand, within MPMX20_00166at 172.998 kb on + strand, within MPMX20_00166at 173.029 kb on + strand, within MPMX20_00166at 173.103 kb on + strand, within MPMX20_00166at 173.103 kb on + strand, within MPMX20_00166at 173.230 kb on + strand, within MPMX20_00166at 173.255 kb on - strand, within MPMX20_00166at 173.312 kb on - strand, within MPMX20_00166at 173.340 kb on - strand, within MPMX20_00166at 173.345 kb on - strand, within MPMX20_00166at 173.361 kb on + strand, within MPMX20_00166at 173.486 kb on + strand, within MPMX20_00166at 173.486 kb on + strand, within MPMX20_00166at 173.486 kb on + strand, within MPMX20_00166at 173.554 kb on + strand, within MPMX20_00166at 173.557 kb on - strand, within MPMX20_00166at 173.587 kb on - strand, within MPMX20_00166at 173.587 kb on - strand, within MPMX20_00166at 173.598 kb on + strand, within MPMX20_00166at 173.598 kb on + strand, within MPMX20_00166at 173.609 kb on + strand, within MPMX20_00166at 173.609 kb on + strand, within MPMX20_00166at 173.617 kb on - strand, within MPMX20_00166at 173.622 kb on + strand, within MPMX20_00166at 173.640 kb on - strand, within MPMX20_00166at 173.668 kb on - strand, within MPMX20_00166at 173.732 kb on + strand, within MPMX20_00166at 173.746 kb on + strand, within MPMX20_00166at 173.746 kb on + strand, within MPMX20_00166at 173.772 kb on - strand, within MPMX20_00166at 173.820 kb on + strandat 173.834 kb on + strandat 173.874 kb on + strandat 173.945 kb on + strandat 173.946 kb on + strandat 173.979 kb on - strandat 174.000 kb on + strandat 174.000 kb on + strandat 174.002 kb on + strandat 174.112 kb on + strand, within MPMX20_00167at 174.137 kb on + strand, within MPMX20_00167at 174.137 kb on + strand, within MPMX20_00167at 174.145 kb on - strand, within MPMX20_00167at 174.197 kb on - strand, within MPMX20_00167at 174.197 kb on - strand, within MPMX20_00167at 174.197 kb on - strand, within MPMX20_00167at 174.339 kb on - strand, within MPMX20_00167at 174.339 kb on - strand, within MPMX20_00167at 174.366 kb on + strand, within MPMX20_00167at 174.366 kb on + strand, within MPMX20_00167at 174.366 kb on + strand, within MPMX20_00167at 174.366 kb on + strand, within MPMX20_00167at 174.366 kb on + strand, within MPMX20_00167at 174.392 kb on + strand, within MPMX20_00167at 174.397 kb on + strand, within MPMX20_00167at 174.405 kb on - strand, within MPMX20_00167at 174.405 kb on - strand, within MPMX20_00167at 174.407 kb on + strand, within MPMX20_00167at 174.415 kb on - strand, within MPMX20_00167at 174.415 kb on - strand, within MPMX20_00167at 174.415 kb on - strand, within MPMX20_00167at 174.415 kb on - strand, within MPMX20_00167at 174.415 kb on - strand, within MPMX20_00167at 174.422 kb on - strand, within MPMX20_00167at 174.466 kb on + strand, within MPMX20_00167at 174.564 kb on + strandat 174.624 kb on - strandat 174.635 kb on - strandat 174.670 kb on + strand, within MPMX20_00168at 174.670 kb on + strand, within MPMX20_00168at 174.715 kb on + strand, within MPMX20_00168at 174.726 kb on + strand, within MPMX20_00168at 174.734 kb on - strand, within MPMX20_00168at 174.894 kb on + strand, within MPMX20_00168at 174.902 kb on - strand, within MPMX20_00168at 174.902 kb on - strand, within MPMX20_00168at 174.902 kb on - strand, within MPMX20_00168

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Paraburkholderia phenoluptrix CO2
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171,496 - MPMX20_00165 0.35 +0.2
171,509 - MPMX20_00165 0.36 -0.3
171,569 - MPMX20_00165 0.40 -0.4
171,569 - MPMX20_00165 0.40 -0.9
171,646 + MPMX20_00165 0.46 +0.7
171,654 - MPMX20_00165 0.46 -0.6
171,654 - MPMX20_00165 0.46 -0.7
171,654 - MPMX20_00165 0.46 -1.5
171,658 + MPMX20_00165 0.46 +1.2
171,666 - MPMX20_00165 0.47 +1.2
171,668 + MPMX20_00165 0.47 +0.0
171,681 - MPMX20_00165 0.48 -1.8
171,797 - MPMX20_00165 0.56 +0.3
171,817 + MPMX20_00165 0.58 -0.8
171,833 - MPMX20_00165 0.59 -0.3
171,843 - MPMX20_00165 0.60 +0.7
171,871 - MPMX20_00165 0.62 +1.4
171,944 + MPMX20_00165 0.67 -0.5
171,986 + MPMX20_00165 0.70 -2.5
171,992 - MPMX20_00165 0.70 -0.7
172,016 - MPMX20_00165 0.72 +0.0
172,018 + MPMX20_00165 0.72 +2.0
172,018 + MPMX20_00165 0.72 -0.8
172,018 + MPMX20_00165 0.72 +0.4
172,018 + MPMX20_00165 0.72 -1.0
172,026 - MPMX20_00165 0.73 -0.5
172,026 - MPMX20_00165 0.73 +0.2
172,026 - MPMX20_00165 0.73 -0.2
172,026 - MPMX20_00165 0.73 +0.3
172,026 - MPMX20_00165 0.73 +0.2
172,026 - MPMX20_00165 0.73 +0.5
172,052 + MPMX20_00165 0.75 +0.3
172,107 + MPMX20_00165 0.79 -1.8
172,131 - MPMX20_00165 0.81 +0.1
172,141 - MPMX20_00165 0.81 -0.8
172,214 + MPMX20_00165 0.87 -2.0
172,214 + MPMX20_00165 0.87 +1.7
172,222 - MPMX20_00165 0.87 +0.0
172,222 - MPMX20_00165 0.87 -1.7
172,232 + MPMX20_00165 0.88 -1.4
172,232 + MPMX20_00165 0.88 +1.0
172,232 + MPMX20_00165 0.88 -0.2
172,232 + MPMX20_00165 0.88 -0.3
172,232 + MPMX20_00165 0.88 -1.1
172,232 + MPMX20_00165 0.88 +0.4
172,232 + MPMX20_00165 0.88 +1.0
172,240 - MPMX20_00165 0.88 -1.2
172,240 - MPMX20_00165 0.88 +3.0
172,240 - MPMX20_00165 0.88 -0.7
172,240 - MPMX20_00165 0.88 -1.9
172,240 - MPMX20_00165 0.88 +0.2
172,257 - MPMX20_00165 0.90 +0.4
172,314 + +0.7
172,314 + -2.2
172,328 - -0.1
172,356 - +0.4
172,356 - +2.0
172,378 + +4.0
172,378 + -2.1
172,482 + +0.7
172,490 - -0.7
172,490 - -0.6
172,526 + -0.9
172,577 - +0.1
172,598 - +4.0
172,610 - +0.0
172,615 - +0.0
172,672 + MPMX20_00166 0.14 -0.0
172,680 - MPMX20_00166 0.14 -2.1
172,714 - MPMX20_00166 0.17 -1.6
172,773 + MPMX20_00166 0.21 -2.4
172,773 + MPMX20_00166 0.21 -1.6
172,773 + MPMX20_00166 0.21 -1.1
172,773 + MPMX20_00166 0.21 -0.9
172,773 + MPMX20_00166 0.21 +0.4
172,773 + MPMX20_00166 0.21 -0.8
172,773 + MPMX20_00166 0.21 -0.9
172,773 + MPMX20_00166 0.21 +1.0
172,781 - MPMX20_00166 0.21 -0.8
172,781 - MPMX20_00166 0.21 -0.4
172,781 - MPMX20_00166 0.21 +0.4
172,783 - MPMX20_00166 0.21 -0.7
172,783 - MPMX20_00166 0.21 -0.7
172,790 + MPMX20_00166 0.22 -0.7
172,856 + MPMX20_00166 0.26 -1.4
172,998 + MPMX20_00166 0.36 +0.7
173,029 + MPMX20_00166 0.38 -1.0
173,103 + MPMX20_00166 0.43 +0.0
173,103 + MPMX20_00166 0.43 -1.0
173,230 + MPMX20_00166 0.52 -0.8
173,255 - MPMX20_00166 0.54 -1.4
173,312 - MPMX20_00166 0.58 +1.0
173,340 - MPMX20_00166 0.60 -0.7
173,345 - MPMX20_00166 0.60 -1.8
173,361 + MPMX20_00166 0.61 -0.7
173,486 + MPMX20_00166 0.70 +2.1
173,486 + MPMX20_00166 0.70 +0.2
173,486 + MPMX20_00166 0.70 +0.0
173,554 + MPMX20_00166 0.74 -1.2
173,557 - MPMX20_00166 0.75 -0.4
173,587 - MPMX20_00166 0.77 +0.2
173,587 - MPMX20_00166 0.77 +0.2
173,598 + MPMX20_00166 0.77 -0.8
173,598 + MPMX20_00166 0.77 -1.1
173,609 + MPMX20_00166 0.78 -0.1
173,609 + MPMX20_00166 0.78 +0.6
173,617 - MPMX20_00166 0.79 +1.3
173,622 + MPMX20_00166 0.79 -0.1
173,640 - MPMX20_00166 0.80 +1.3
173,668 - MPMX20_00166 0.82 -1.0
173,732 + MPMX20_00166 0.87 -1.2
173,746 + MPMX20_00166 0.88 +0.0
173,746 + MPMX20_00166 0.88 -2.5
173,772 - MPMX20_00166 0.89 +1.4
173,820 + -2.2
173,834 + -2.2
173,874 + -0.5
173,945 + -2.2
173,946 + -1.3
173,979 - -0.3
174,000 + +3.0
174,000 + +0.7
174,002 + -2.1
174,112 + MPMX20_00167 0.15 +2.0
174,137 + MPMX20_00167 0.20 +0.8
174,137 + MPMX20_00167 0.20 -1.5
174,145 - MPMX20_00167 0.21 +0.2
174,197 - MPMX20_00167 0.31 +3.6
174,197 - MPMX20_00167 0.31 +1.2
174,197 - MPMX20_00167 0.31 -0.3
174,339 - MPMX20_00167 0.57 -0.4
174,339 - MPMX20_00167 0.57 +2.0
174,366 + MPMX20_00167 0.62 -2.0
174,366 + MPMX20_00167 0.62 +0.1
174,366 + MPMX20_00167 0.62 +3.4
174,366 + MPMX20_00167 0.62 +1.7
174,366 + MPMX20_00167 0.62 -0.5
174,392 + MPMX20_00167 0.67 -0.9
174,397 + MPMX20_00167 0.68 +3.0
174,405 - MPMX20_00167 0.69 -1.7
174,405 - MPMX20_00167 0.69 +2.0
174,407 + MPMX20_00167 0.70 -1.2
174,415 - MPMX20_00167 0.71 -0.2
174,415 - MPMX20_00167 0.71 -1.3
174,415 - MPMX20_00167 0.71 -1.9
174,415 - MPMX20_00167 0.71 -0.7
174,415 - MPMX20_00167 0.71 +0.1
174,422 - MPMX20_00167 0.73 -0.3
174,466 + MPMX20_00167 0.81 +1.4
174,564 + -0.4
174,624 - +0.5
174,635 - +0.2
174,670 + MPMX20_00168 0.11 -1.1
174,670 + MPMX20_00168 0.11 -2.5
174,715 + MPMX20_00168 0.16 -0.7
174,726 + MPMX20_00168 0.17 -1.0
174,734 - MPMX20_00168 0.18 -0.8
174,894 + MPMX20_00168 0.35 -0.5
174,902 - MPMX20_00168 0.36 +0.0
174,902 - MPMX20_00168 0.36 -0.6
174,902 - MPMX20_00168 0.36 +0.5

Or see this region's nucleotide sequence