Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00160

Experiment: M9 plate, 1:1 coculture with Paraburkholderia phenoluptrix CO2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00159 and MPMX20_00160 are separated by 314 nucleotidesMPMX20_00160 and MPMX20_00161 are separated by 47 nucleotides MPMX20_00159: MPMX20_00159 - Periplasmic alpha-amylase, at 162,513 to 164,543 _00159 MPMX20_00160: MPMX20_00160 - hypothetical protein, at 164,858 to 165,682 _00160 MPMX20_00161: MPMX20_00161 - Xylose operon regulatory protein, at 165,730 to 166,908 _00161 Position (kb) 164 165 166Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 163.879 kb on + strand, within MPMX20_00159at 163.879 kb on + strand, within MPMX20_00159at 163.879 kb on + strand, within MPMX20_00159at 163.879 kb on - strand, within MPMX20_00159at 163.908 kb on - strand, within MPMX20_00159at 163.910 kb on + strand, within MPMX20_00159at 163.932 kb on + strand, within MPMX20_00159at 163.997 kb on + strand, within MPMX20_00159at 164.011 kb on + strand, within MPMX20_00159at 164.057 kb on + strand, within MPMX20_00159at 164.086 kb on + strand, within MPMX20_00159at 164.086 kb on + strand, within MPMX20_00159at 164.162 kb on - strand, within MPMX20_00159at 164.162 kb on - strand, within MPMX20_00159at 164.194 kb on - strand, within MPMX20_00159at 164.220 kb on + strand, within MPMX20_00159at 164.220 kb on + strand, within MPMX20_00159at 164.228 kb on - strand, within MPMX20_00159at 164.312 kb on - strand, within MPMX20_00159at 164.394 kb on - strandat 164.407 kb on + strandat 164.415 kb on - strandat 164.422 kb on + strandat 164.431 kb on - strandat 164.494 kb on + strandat 164.494 kb on + strandat 164.494 kb on + strandat 164.494 kb on + strandat 164.494 kb on + strandat 164.494 kb on + strandat 164.494 kb on + strandat 164.494 kb on + strandat 164.502 kb on - strandat 164.502 kb on - strandat 164.502 kb on - strandat 164.502 kb on - strandat 164.502 kb on - strandat 164.502 kb on - strandat 164.502 kb on - strandat 164.502 kb on - strandat 164.502 kb on - strandat 164.582 kb on - strandat 164.585 kb on + strandat 164.585 kb on + strandat 164.585 kb on + strandat 164.717 kb on + strandat 164.717 kb on + strandat 164.717 kb on + strandat 164.717 kb on + strandat 164.717 kb on + strandat 164.717 kb on + strandat 164.717 kb on + strandat 164.725 kb on - strandat 164.725 kb on - strandat 164.725 kb on - strandat 164.725 kb on - strandat 164.725 kb on - strandat 164.725 kb on - strandat 164.757 kb on - strandat 164.816 kb on + strandat 164.826 kb on + strandat 164.834 kb on + strandat 164.842 kb on - strandat 164.842 kb on - strandat 164.842 kb on - strandat 164.862 kb on - strandat 164.881 kb on + strandat 164.894 kb on + strandat 164.924 kb on + strandat 164.951 kb on + strand, within MPMX20_00160at 164.991 kb on + strand, within MPMX20_00160at 164.991 kb on + strand, within MPMX20_00160at 164.991 kb on + strand, within MPMX20_00160at 164.991 kb on + strand, within MPMX20_00160at 164.991 kb on + strand, within MPMX20_00160at 164.991 kb on - strand, within MPMX20_00160at 164.998 kb on + strand, within MPMX20_00160at 164.998 kb on + strand, within MPMX20_00160at 164.999 kb on - strand, within MPMX20_00160at 164.999 kb on - strand, within MPMX20_00160at 164.999 kb on - strand, within MPMX20_00160at 164.999 kb on - strand, within MPMX20_00160at 165.006 kb on + strand, within MPMX20_00160at 165.006 kb on - strand, within MPMX20_00160at 165.037 kb on + strand, within MPMX20_00160at 165.045 kb on - strand, within MPMX20_00160at 165.045 kb on - strand, within MPMX20_00160at 165.045 kb on - strand, within MPMX20_00160at 165.047 kb on + strand, within MPMX20_00160at 165.105 kb on + strand, within MPMX20_00160at 165.113 kb on - strand, within MPMX20_00160at 165.113 kb on - strand, within MPMX20_00160at 165.113 kb on - strand, within MPMX20_00160at 165.209 kb on + strand, within MPMX20_00160at 165.232 kb on + strand, within MPMX20_00160at 165.281 kb on + strand, within MPMX20_00160at 165.281 kb on + strand, within MPMX20_00160at 165.281 kb on + strand, within MPMX20_00160at 165.281 kb on + strand, within MPMX20_00160at 165.281 kb on + strand, within MPMX20_00160at 165.305 kb on - strand, within MPMX20_00160at 165.310 kb on - strand, within MPMX20_00160at 165.312 kb on + strand, within MPMX20_00160at 165.352 kb on - strand, within MPMX20_00160at 165.439 kb on + strand, within MPMX20_00160at 165.442 kb on - strand, within MPMX20_00160at 165.442 kb on - strand, within MPMX20_00160at 165.449 kb on - strand, within MPMX20_00160at 165.511 kb on - strand, within MPMX20_00160at 165.554 kb on + strand, within MPMX20_00160at 165.589 kb on + strand, within MPMX20_00160at 165.610 kb on + strandat 165.611 kb on + strandat 165.611 kb on + strandat 165.643 kb on + strandat 165.701 kb on + strandat 165.753 kb on - strandat 165.765 kb on + strandat 165.778 kb on + strandat 165.778 kb on + strandat 165.786 kb on + strandat 165.794 kb on - strandat 165.794 kb on - strandat 165.794 kb on - strandat 165.794 kb on - strandat 165.827 kb on + strandat 165.827 kb on + strandat 165.830 kb on - strandat 165.835 kb on - strandat 165.835 kb on - strandat 165.863 kb on + strand, within MPMX20_00161at 165.952 kb on + strand, within MPMX20_00161at 165.982 kb on + strand, within MPMX20_00161at 165.988 kb on - strand, within MPMX20_00161at 165.998 kb on + strand, within MPMX20_00161at 166.006 kb on - strand, within MPMX20_00161at 166.087 kb on + strand, within MPMX20_00161at 166.095 kb on - strand, within MPMX20_00161at 166.095 kb on - strand, within MPMX20_00161at 166.106 kb on + strand, within MPMX20_00161at 166.114 kb on - strand, within MPMX20_00161at 166.190 kb on + strand, within MPMX20_00161at 166.190 kb on + strand, within MPMX20_00161at 166.190 kb on + strand, within MPMX20_00161at 166.198 kb on - strand, within MPMX20_00161at 166.198 kb on - strand, within MPMX20_00161at 166.198 kb on - strand, within MPMX20_00161at 166.198 kb on - strand, within MPMX20_00161at 166.237 kb on + strand, within MPMX20_00161at 166.242 kb on + strand, within MPMX20_00161at 166.291 kb on + strand, within MPMX20_00161at 166.299 kb on - strand, within MPMX20_00161at 166.299 kb on - strand, within MPMX20_00161at 166.299 kb on - strand, within MPMX20_00161at 166.299 kb on - strand, within MPMX20_00161at 166.299 kb on - strand, within MPMX20_00161at 166.381 kb on + strand, within MPMX20_00161at 166.424 kb on + strand, within MPMX20_00161at 166.492 kb on - strand, within MPMX20_00161at 166.497 kb on + strand, within MPMX20_00161at 166.510 kb on - strand, within MPMX20_00161at 166.548 kb on + strand, within MPMX20_00161at 166.583 kb on + strand, within MPMX20_00161at 166.583 kb on + strand, within MPMX20_00161at 166.583 kb on + strand, within MPMX20_00161at 166.583 kb on + strand, within MPMX20_00161at 166.591 kb on - strand, within MPMX20_00161at 166.591 kb on - strand, within MPMX20_00161at 166.591 kb on - strand, within MPMX20_00161at 166.591 kb on - strand, within MPMX20_00161at 166.612 kb on + strand, within MPMX20_00161at 166.618 kb on - strand, within MPMX20_00161at 166.633 kb on + strand, within MPMX20_00161

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Paraburkholderia phenoluptrix CO2
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163,879 + MPMX20_00159 0.67 -1.9
163,879 + MPMX20_00159 0.67 -0.2
163,879 + MPMX20_00159 0.67 -1.6
163,879 - MPMX20_00159 0.67 -1.9
163,908 - MPMX20_00159 0.69 +2.0
163,910 + MPMX20_00159 0.69 -0.3
163,932 + MPMX20_00159 0.70 +1.2
163,997 + MPMX20_00159 0.73 -1.4
164,011 + MPMX20_00159 0.74 +1.0
164,057 + MPMX20_00159 0.76 -0.6
164,086 + MPMX20_00159 0.77 -1.6
164,086 + MPMX20_00159 0.77 +1.4
164,162 - MPMX20_00159 0.81 +0.1
164,162 - MPMX20_00159 0.81 +0.9
164,194 - MPMX20_00159 0.83 +1.2
164,220 + MPMX20_00159 0.84 -1.6
164,220 + MPMX20_00159 0.84 -0.9
164,228 - MPMX20_00159 0.84 +0.4
164,312 - MPMX20_00159 0.89 +1.4
164,394 - -1.1
164,407 + +0.0
164,415 - -0.6
164,422 + -1.2
164,431 - -0.4
164,494 + -1.6
164,494 + +1.5
164,494 + +0.3
164,494 + +0.8
164,494 + -1.0
164,494 + +1.0
164,494 + -1.7
164,494 + +0.9
164,502 - -0.5
164,502 - -0.5
164,502 - +1.5
164,502 - -0.4
164,502 - +0.4
164,502 - -1.1
164,502 - -0.6
164,502 - -1.0
164,502 - +3.6
164,582 - -1.4
164,585 + +1.2
164,585 + -1.2
164,585 + +1.2
164,717 + -0.1
164,717 + -0.9
164,717 + +0.7
164,717 + -0.7
164,717 + -0.5
164,717 + +3.0
164,717 + +0.6
164,725 - -0.5
164,725 - +1.5
164,725 - -0.2
164,725 - -2.9
164,725 - -2.1
164,725 - -0.7
164,757 - -1.9
164,816 + -2.4
164,826 + +0.2
164,834 + -0.5
164,842 - +1.0
164,842 - -0.1
164,842 - +1.5
164,862 - -0.4
164,881 + +1.0
164,894 + -0.5
164,924 + -1.4
164,951 + MPMX20_00160 0.11 -0.1
164,991 + MPMX20_00160 0.16 -0.1
164,991 + MPMX20_00160 0.16 +0.2
164,991 + MPMX20_00160 0.16 +0.8
164,991 + MPMX20_00160 0.16 +0.7
164,991 + MPMX20_00160 0.16 -1.3
164,991 - MPMX20_00160 0.16 +0.7
164,998 + MPMX20_00160 0.17 +2.0
164,998 + MPMX20_00160 0.17 +1.0
164,999 - MPMX20_00160 0.17 -0.7
164,999 - MPMX20_00160 0.17 -2.7
164,999 - MPMX20_00160 0.17 -2.3
164,999 - MPMX20_00160 0.17 -1.0
165,006 + MPMX20_00160 0.18 +0.1
165,006 - MPMX20_00160 0.18 -0.5
165,037 + MPMX20_00160 0.22 -1.0
165,045 - MPMX20_00160 0.23 +0.5
165,045 - MPMX20_00160 0.23 +0.9
165,045 - MPMX20_00160 0.23 -0.7
165,047 + MPMX20_00160 0.23 -2.0
165,105 + MPMX20_00160 0.30 -0.7
165,113 - MPMX20_00160 0.31 +0.0
165,113 - MPMX20_00160 0.31 -0.7
165,113 - MPMX20_00160 0.31 -0.1
165,209 + MPMX20_00160 0.43 -1.7
165,232 + MPMX20_00160 0.45 -1.4
165,281 + MPMX20_00160 0.51 +0.3
165,281 + MPMX20_00160 0.51 -2.4
165,281 + MPMX20_00160 0.51 -0.5
165,281 + MPMX20_00160 0.51 +0.0
165,281 + MPMX20_00160 0.51 -0.3
165,305 - MPMX20_00160 0.54 -0.3
165,310 - MPMX20_00160 0.55 -0.4
165,312 + MPMX20_00160 0.55 +3.0
165,352 - MPMX20_00160 0.60 -1.3
165,439 + MPMX20_00160 0.70 -2.7
165,442 - MPMX20_00160 0.71 -2.5
165,442 - MPMX20_00160 0.71 -0.1
165,449 - MPMX20_00160 0.72 +2.0
165,511 - MPMX20_00160 0.79 -2.7
165,554 + MPMX20_00160 0.84 +0.7
165,589 + MPMX20_00160 0.89 -0.5
165,610 + -0.3
165,611 + +2.0
165,611 + +0.0
165,643 + -1.3
165,701 + -0.2
165,753 - +0.1
165,765 + -2.3
165,778 + -1.5
165,778 + -1.3
165,786 + -2.4
165,794 - -0.4
165,794 - +0.1
165,794 - +0.6
165,794 - +2.0
165,827 + +1.1
165,827 + -1.0
165,830 - -1.0
165,835 - -1.1
165,835 - +2.0
165,863 + MPMX20_00161 0.11 -0.1
165,952 + MPMX20_00161 0.19 -0.8
165,982 + MPMX20_00161 0.21 +1.8
165,988 - MPMX20_00161 0.22 +0.0
165,998 + MPMX20_00161 0.23 -0.5
166,006 - MPMX20_00161 0.23 +0.0
166,087 + MPMX20_00161 0.30 +0.7
166,095 - MPMX20_00161 0.31 +2.0
166,095 - MPMX20_00161 0.31 -1.4
166,106 + MPMX20_00161 0.32 -1.4
166,114 - MPMX20_00161 0.33 +1.5
166,190 + MPMX20_00161 0.39 -0.9
166,190 + MPMX20_00161 0.39 -0.7
166,190 + MPMX20_00161 0.39 -0.7
166,198 - MPMX20_00161 0.40 +0.3
166,198 - MPMX20_00161 0.40 +1.0
166,198 - MPMX20_00161 0.40 -0.8
166,198 - MPMX20_00161 0.40 -0.4
166,237 + MPMX20_00161 0.43 -0.4
166,242 + MPMX20_00161 0.43 +1.7
166,291 + MPMX20_00161 0.48 -1.9
166,299 - MPMX20_00161 0.48 -2.4
166,299 - MPMX20_00161 0.48 +1.2
166,299 - MPMX20_00161 0.48 +0.5
166,299 - MPMX20_00161 0.48 +1.2
166,299 - MPMX20_00161 0.48 -0.3
166,381 + MPMX20_00161 0.55 -0.2
166,424 + MPMX20_00161 0.59 +0.4
166,492 - MPMX20_00161 0.65 -0.1
166,497 + MPMX20_00161 0.65 -0.4
166,510 - MPMX20_00161 0.66 -0.4
166,548 + MPMX20_00161 0.69 +0.3
166,583 + MPMX20_00161 0.72 +0.7
166,583 + MPMX20_00161 0.72 -0.6
166,583 + MPMX20_00161 0.72 -1.0
166,583 + MPMX20_00161 0.72 +3.0
166,591 - MPMX20_00161 0.73 -1.2
166,591 - MPMX20_00161 0.73 +0.7
166,591 - MPMX20_00161 0.73 +0.7
166,591 - MPMX20_00161 0.73 +0.2
166,612 + MPMX20_00161 0.75 +1.5
166,618 - MPMX20_00161 0.75 -1.0
166,633 + MPMX20_00161 0.77 -0.7

Or see this region's nucleotide sequence