Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS19600

Experiment: 1-octen-3-ol 0.6784116667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS19595 and AZOBR_RS19600 are separated by 152 nucleotides AZOBR_RS19595: AZOBR_RS19595 - deacylase, at 1,166,954 to 1,168,069 _RS19595 AZOBR_RS19600: AZOBR_RS19600 - hypothetical protein, at 1,168,222 to 1,168,737 _RS19600 Position (kb) 1168 1169Strain fitness (log2 ratio) -2 -1 0 1at 1167.489 kb on - strand, within AZOBR_RS19595at 1167.489 kb on - strand, within AZOBR_RS19595at 1167.489 kb on - strand, within AZOBR_RS19595at 1167.489 kb on - strand, within AZOBR_RS19595at 1167.972 kb on - strandat 1167.972 kb on - strandat 1167.972 kb on - strandat 1168.068 kb on - strandat 1168.068 kb on - strandat 1168.391 kb on + strand, within AZOBR_RS19600at 1168.391 kb on + strand, within AZOBR_RS19600at 1168.391 kb on + strand, within AZOBR_RS19600at 1168.413 kb on + strand, within AZOBR_RS19600at 1168.414 kb on - strand, within AZOBR_RS19600at 1168.418 kb on + strand, within AZOBR_RS19600at 1168.848 kb on + strandat 1168.963 kb on + strandat 1169.412 kb on - strandat 1169.467 kb on + strandat 1169.467 kb on + strandat 1169.468 kb on - strandat 1169.653 kb on - strandat 1169.694 kb on + strandat 1169.699 kb on - strandat 1169.699 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-octen-3-ol 0.6784116667 mM
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1,167,489 - AZOBR_RS19595 0.48 -0.2
1,167,489 - AZOBR_RS19595 0.48 -0.2
1,167,489 - AZOBR_RS19595 0.48 -0.4
1,167,489 - AZOBR_RS19595 0.48 -0.5
1,167,972 - -1.7
1,167,972 - -0.2
1,167,972 - +0.0
1,168,068 - -0.2
1,168,068 - +0.2
1,168,391 + AZOBR_RS19600 0.33 +0.5
1,168,391 + AZOBR_RS19600 0.33 -0.1
1,168,391 + AZOBR_RS19600 0.33 +0.5
1,168,413 + AZOBR_RS19600 0.37 -0.7
1,168,414 - AZOBR_RS19600 0.37 -0.3
1,168,418 + AZOBR_RS19600 0.38 -2.3
1,168,848 + -0.3
1,168,963 + +0.5
1,169,412 - +1.0
1,169,467 + -2.0
1,169,467 + +0.5
1,169,468 - +1.0
1,169,653 - -0.2
1,169,694 + +0.5
1,169,699 - +1.0
1,169,699 - +0.0

Or see this region's nucleotide sequence