Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS19070

Experiment: 1-octen-3-ol 0.6784116667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS19065 and AZOBR_RS19070 are separated by 442 nucleotidesAZOBR_RS19070 and AZOBR_RS19075 are separated by 250 nucleotidesAZOBR_RS19075 and AZOBR_RS19080 overlap by 1 nucleotides AZOBR_RS19065: AZOBR_RS19065 - anthranilate phosphoribosyltransferase, at 1,045,419 to 1,046,909 _RS19065 AZOBR_RS19070: AZOBR_RS19070 - hydrogenase, at 1,047,352 to 1,049,583 _RS19070 AZOBR_RS19075: AZOBR_RS19075 - Fe(II)-dependent oxygenase, at 1,049,834 to 1,050,520 _RS19075 AZOBR_RS19080: AZOBR_RS19080 - hypothetical protein, at 1,050,520 to 1,051,191 _RS19080 Position (kb) 1047 1048 1049 1050Strain fitness (log2 ratio) -2 -1 0 1at 1046.359 kb on - strand, within AZOBR_RS19065at 1046.715 kb on + strand, within AZOBR_RS19065at 1046.716 kb on - strand, within AZOBR_RS19065at 1046.716 kb on - strand, within AZOBR_RS19065at 1047.225 kb on + strandat 1047.225 kb on + strandat 1047.225 kb on + strandat 1047.225 kb on + strandat 1047.225 kb on + strandat 1047.226 kb on - strandat 1047.226 kb on - strandat 1047.226 kb on - strandat 1047.733 kb on + strand, within AZOBR_RS19070at 1047.733 kb on + strand, within AZOBR_RS19070at 1047.733 kb on + strand, within AZOBR_RS19070at 1047.734 kb on - strand, within AZOBR_RS19070at 1047.734 kb on - strand, within AZOBR_RS19070at 1047.763 kb on + strand, within AZOBR_RS19070at 1047.764 kb on - strand, within AZOBR_RS19070at 1047.892 kb on + strand, within AZOBR_RS19070at 1047.893 kb on - strand, within AZOBR_RS19070at 1047.893 kb on - strand, within AZOBR_RS19070at 1047.994 kb on + strand, within AZOBR_RS19070at 1048.102 kb on + strand, within AZOBR_RS19070at 1048.102 kb on + strand, within AZOBR_RS19070at 1048.103 kb on - strand, within AZOBR_RS19070at 1048.109 kb on - strand, within AZOBR_RS19070at 1048.213 kb on + strand, within AZOBR_RS19070at 1048.213 kb on + strand, within AZOBR_RS19070at 1048.300 kb on + strand, within AZOBR_RS19070at 1048.300 kb on + strand, within AZOBR_RS19070at 1048.301 kb on - strand, within AZOBR_RS19070at 1048.324 kb on + strand, within AZOBR_RS19070at 1048.325 kb on - strand, within AZOBR_RS19070at 1048.508 kb on - strand, within AZOBR_RS19070at 1048.619 kb on - strand, within AZOBR_RS19070at 1048.844 kb on - strand, within AZOBR_RS19070at 1048.870 kb on + strand, within AZOBR_RS19070at 1048.870 kb on + strand, within AZOBR_RS19070at 1048.871 kb on - strand, within AZOBR_RS19070at 1048.990 kb on + strand, within AZOBR_RS19070at 1049.074 kb on + strand, within AZOBR_RS19070at 1049.074 kb on + strand, within AZOBR_RS19070at 1049.075 kb on - strand, within AZOBR_RS19070at 1049.204 kb on - strand, within AZOBR_RS19070at 1049.204 kb on - strand, within AZOBR_RS19070at 1049.209 kb on + strand, within AZOBR_RS19070at 1049.366 kb on - strandat 1049.377 kb on + strandat 1049.443 kb on + strandat 1049.480 kb on - strandat 1049.503 kb on + strandat 1049.503 kb on + strandat 1049.504 kb on - strandat 1049.647 kb on + strandat 1049.647 kb on + strandat 1049.647 kb on + strandat 1049.647 kb on + strandat 1049.647 kb on + strandat 1049.647 kb on + strandat 1049.647 kb on + strandat 1049.648 kb on - strandat 1049.648 kb on - strandat 1049.649 kb on + strandat 1049.649 kb on + strandat 1049.666 kb on - strandat 1050.110 kb on + strand, within AZOBR_RS19075at 1050.248 kb on + strand, within AZOBR_RS19075at 1050.248 kb on + strand, within AZOBR_RS19075at 1050.249 kb on - strand, within AZOBR_RS19075at 1050.249 kb on - strand, within AZOBR_RS19075at 1050.404 kb on + strand, within AZOBR_RS19075at 1050.405 kb on - strand, within AZOBR_RS19075

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-octen-3-ol 0.6784116667 mM
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1,046,359 - AZOBR_RS19065 0.63 -0.1
1,046,715 + AZOBR_RS19065 0.87 -0.4
1,046,716 - AZOBR_RS19065 0.87 +0.4
1,046,716 - AZOBR_RS19065 0.87 -0.3
1,047,225 + -0.3
1,047,225 + +0.8
1,047,225 + +0.1
1,047,225 + -0.5
1,047,225 + +0.9
1,047,226 - -0.3
1,047,226 - -2.0
1,047,226 - +1.0
1,047,733 + AZOBR_RS19070 0.17 -0.2
1,047,733 + AZOBR_RS19070 0.17 +0.0
1,047,733 + AZOBR_RS19070 0.17 +1.0
1,047,734 - AZOBR_RS19070 0.17 +0.1
1,047,734 - AZOBR_RS19070 0.17 +0.4
1,047,763 + AZOBR_RS19070 0.18 -0.5
1,047,764 - AZOBR_RS19070 0.18 -0.1
1,047,892 + AZOBR_RS19070 0.24 +0.3
1,047,893 - AZOBR_RS19070 0.24 -0.2
1,047,893 - AZOBR_RS19070 0.24 +1.3
1,047,994 + AZOBR_RS19070 0.29 +1.0
1,048,102 + AZOBR_RS19070 0.34 -0.5
1,048,102 + AZOBR_RS19070 0.34 +0.6
1,048,103 - AZOBR_RS19070 0.34 +0.0
1,048,109 - AZOBR_RS19070 0.34 +1.2
1,048,213 + AZOBR_RS19070 0.39 +0.5
1,048,213 + AZOBR_RS19070 0.39 +0.6
1,048,300 + AZOBR_RS19070 0.42 +0.5
1,048,300 + AZOBR_RS19070 0.42 +0.5
1,048,301 - AZOBR_RS19070 0.43 +0.9
1,048,324 + AZOBR_RS19070 0.44 -0.7
1,048,325 - AZOBR_RS19070 0.44 -0.3
1,048,508 - AZOBR_RS19070 0.52 +0.2
1,048,619 - AZOBR_RS19070 0.57 -0.3
1,048,844 - AZOBR_RS19070 0.67 +0.4
1,048,870 + AZOBR_RS19070 0.68 -0.3
1,048,870 + AZOBR_RS19070 0.68 -0.0
1,048,871 - AZOBR_RS19070 0.68 +0.0
1,048,990 + AZOBR_RS19070 0.73 -0.1
1,049,074 + AZOBR_RS19070 0.77 -0.4
1,049,074 + AZOBR_RS19070 0.77 -0.5
1,049,075 - AZOBR_RS19070 0.77 +1.6
1,049,204 - AZOBR_RS19070 0.83 -0.2
1,049,204 - AZOBR_RS19070 0.83 +0.0
1,049,209 + AZOBR_RS19070 0.83 +0.1
1,049,366 - +0.2
1,049,377 + +0.0
1,049,443 + +0.3
1,049,480 - +0.2
1,049,503 + +0.1
1,049,503 + +0.0
1,049,504 - +0.5
1,049,647 + -0.2
1,049,647 + +0.2
1,049,647 + -0.6
1,049,647 + -0.2
1,049,647 + -0.5
1,049,647 + +0.1
1,049,647 + -1.2
1,049,648 - +0.0
1,049,648 - -0.9
1,049,649 + +0.3
1,049,649 + -0.3
1,049,666 - +0.1
1,050,110 + AZOBR_RS19075 0.40 -0.4
1,050,248 + AZOBR_RS19075 0.60 +0.9
1,050,248 + AZOBR_RS19075 0.60 +0.5
1,050,249 - AZOBR_RS19075 0.60 +0.4
1,050,249 - AZOBR_RS19075 0.60 -0.1
1,050,404 + AZOBR_RS19075 0.83 -0.1
1,050,405 - AZOBR_RS19075 0.83 -0.5

Or see this region's nucleotide sequence