Experiment: 1-octen-3-ol 0.6784116667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS07880 and AZOBR_RS07885 are separated by 92 nucleotides AZOBR_RS07885 and AZOBR_RS07890 are separated by 488 nucleotides
AZOBR_RS07880: AZOBR_RS07880 - conserved exported protein of unknown function, at 1,660,793 to 1,660,999
_RS07880
AZOBR_RS07885: AZOBR_RS07885 - spermidine/putrescine ABC transporter substrate-binding protein, at 1,661,092 to 1,662,393
_RS07885
AZOBR_RS07890: AZOBR_RS07890 - acetoin utilization protein, at 1,662,882 to 1,663,811
_RS07890
Position (kb)
1661
1662
1663 Strain fitness (log2 ratio)
-2
-1
0
1 at 1660.159 kb on + strand at 1660.159 kb on + strand at 1660.160 kb on - strand at 1660.160 kb on - strand at 1660.333 kb on + strand at 1660.334 kb on - strand at 1660.334 kb on - strand at 1660.361 kb on - strand at 1660.728 kb on - strand at 1661.093 kb on + strand at 1661.300 kb on + strand, within AZOBR_RS07885 at 1661.301 kb on - strand, within AZOBR_RS07885 at 1661.372 kb on + strand, within AZOBR_RS07885 at 1661.372 kb on + strand, within AZOBR_RS07885 at 1661.372 kb on + strand, within AZOBR_RS07885 at 1661.372 kb on + strand, within AZOBR_RS07885 at 1661.372 kb on + strand, within AZOBR_RS07885 at 1661.372 kb on + strand, within AZOBR_RS07885 at 1661.372 kb on + strand, within AZOBR_RS07885 at 1661.372 kb on + strand, within AZOBR_RS07885 at 1661.373 kb on - strand, within AZOBR_RS07885 at 1661.373 kb on - strand, within AZOBR_RS07885 at 1661.705 kb on + strand, within AZOBR_RS07885 at 1661.705 kb on + strand, within AZOBR_RS07885 at 1661.705 kb on + strand, within AZOBR_RS07885 at 1661.705 kb on + strand, within AZOBR_RS07885 at 1661.705 kb on + strand, within AZOBR_RS07885 at 1661.705 kb on + strand, within AZOBR_RS07885 at 1661.705 kb on + strand, within AZOBR_RS07885 at 1661.706 kb on - strand, within AZOBR_RS07885 at 1661.706 kb on - strand, within AZOBR_RS07885 at 1661.706 kb on - strand, within AZOBR_RS07885 at 1661.706 kb on - strand, within AZOBR_RS07885 at 1661.706 kb on - strand, within AZOBR_RS07885 at 1661.706 kb on - strand, within AZOBR_RS07885 at 1661.750 kb on + strand, within AZOBR_RS07885 at 1661.750 kb on + strand, within AZOBR_RS07885 at 1661.750 kb on + strand, within AZOBR_RS07885 at 1661.751 kb on - strand, within AZOBR_RS07885 at 1661.751 kb on - strand, within AZOBR_RS07885 at 1661.751 kb on - strand, within AZOBR_RS07885 at 1661.885 kb on + strand, within AZOBR_RS07885 at 1661.886 kb on - strand, within AZOBR_RS07885 at 1662.023 kb on + strand, within AZOBR_RS07885 at 1662.023 kb on + strand, within AZOBR_RS07885 at 1662.066 kb on - strand, within AZOBR_RS07885 at 1662.066 kb on - strand, within AZOBR_RS07885 at 1662.291 kb on - strand at 1662.405 kb on + strand at 1662.406 kb on - strand at 1662.587 kb on - strand at 1662.663 kb on + strand at 1662.663 kb on + strand at 1662.663 kb on + strand at 1662.664 kb on - strand at 1662.664 kb on - strand at 1662.664 kb on - strand at 1662.782 kb on - strand at 1662.784 kb on - strand at 1662.861 kb on + strand at 1662.862 kb on - strand at 1663.068 kb on + strand, within AZOBR_RS07890 at 1663.069 kb on - strand, within AZOBR_RS07890 at 1663.069 kb on - strand, within AZOBR_RS07890 at 1663.363 kb on - strand, within AZOBR_RS07890 at 1663.363 kb on - strand, within AZOBR_RS07890
Per-strain Table
Position Strand Gene LocusTag Fraction 1-octen-3-ol 0.6784116667 mM remove 1,660,159 + +0.1 1,660,159 + -0.3 1,660,160 - -0.6 1,660,160 - +0.4 1,660,333 + +0.2 1,660,334 - -0.1 1,660,334 - -1.1 1,660,361 - -0.1 1,660,728 - +0.6 1,661,093 + +0.7 1,661,300 + AZOBR_RS07885 0.16 -0.5 1,661,301 - AZOBR_RS07885 0.16 -0.2 1,661,372 + AZOBR_RS07885 0.22 +0.3 1,661,372 + AZOBR_RS07885 0.22 +0.3 1,661,372 + AZOBR_RS07885 0.22 +0.5 1,661,372 + AZOBR_RS07885 0.22 -0.6 1,661,372 + AZOBR_RS07885 0.22 -0.8 1,661,372 + AZOBR_RS07885 0.22 -0.2 1,661,372 + AZOBR_RS07885 0.22 +1.5 1,661,372 + AZOBR_RS07885 0.22 +0.9 1,661,373 - AZOBR_RS07885 0.22 -0.1 1,661,373 - AZOBR_RS07885 0.22 +0.6 1,661,705 + AZOBR_RS07885 0.47 +0.1 1,661,705 + AZOBR_RS07885 0.47 +0.3 1,661,705 + AZOBR_RS07885 0.47 -0.6 1,661,705 + AZOBR_RS07885 0.47 +1.7 1,661,705 + AZOBR_RS07885 0.47 -0.6 1,661,705 + AZOBR_RS07885 0.47 -0.0 1,661,705 + AZOBR_RS07885 0.47 +0.3 1,661,706 - AZOBR_RS07885 0.47 +0.0 1,661,706 - AZOBR_RS07885 0.47 -0.1 1,661,706 - AZOBR_RS07885 0.47 -0.4 1,661,706 - AZOBR_RS07885 0.47 -0.6 1,661,706 - AZOBR_RS07885 0.47 +0.2 1,661,706 - AZOBR_RS07885 0.47 -0.2 1,661,750 + AZOBR_RS07885 0.51 -0.0 1,661,750 + AZOBR_RS07885 0.51 -0.5 1,661,750 + AZOBR_RS07885 0.51 +0.2 1,661,751 - AZOBR_RS07885 0.51 +0.5 1,661,751 - AZOBR_RS07885 0.51 +0.2 1,661,751 - AZOBR_RS07885 0.51 -0.3 1,661,885 + AZOBR_RS07885 0.61 -0.0 1,661,886 - AZOBR_RS07885 0.61 -0.1 1,662,023 + AZOBR_RS07885 0.72 +0.0 1,662,023 + AZOBR_RS07885 0.72 +1.0 1,662,066 - AZOBR_RS07885 0.75 +0.3 1,662,066 - AZOBR_RS07885 0.75 +0.2 1,662,291 - -1.1 1,662,405 + -0.6 1,662,406 - -0.6 1,662,587 - +0.2 1,662,663 + +0.3 1,662,663 + -0.5 1,662,663 + -0.6 1,662,664 - +0.1 1,662,664 - -0.0 1,662,664 - -1.8 1,662,782 - +1.0 1,662,784 - +0.0 1,662,861 + +0.4 1,662,862 - +1.2 1,663,068 + AZOBR_RS07890 0.20 +0.2 1,663,069 - AZOBR_RS07890 0.20 -0.3 1,663,069 - AZOBR_RS07890 0.20 +0.2 1,663,363 - AZOBR_RS07890 0.52 -0.3 1,663,363 - AZOBR_RS07890 0.52 +0.2
Or see this region's nucleotide sequence