Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS07515

Experiment: 1-octen-3-ol 0.6784116667 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAZOBR_RS07510 and AZOBR_RS07515 are separated by 143 nucleotidesAZOBR_RS07515 and AZOBR_RS07520 are separated by 103 nucleotides AZOBR_RS07510: AZOBR_RS07510 - CTP synthase, at 1,580,204 to 1,581,832 _RS07510 AZOBR_RS07515: AZOBR_RS07515 - carboxymethylenebutenolidase, at 1,581,976 to 1,582,674 _RS07515 AZOBR_RS07520: AZOBR_RS07520 - 2-dehydro-3-deoxyphosphooctonate aldolase, at 1,582,778 to 1,583,605 _RS07520 Position (kb) 1581 1582 1583Strain fitness (log2 ratio) -1 0 1at 1581.896 kb on + strandat 1581.896 kb on + strandat 1581.897 kb on - strandat 1581.897 kb on - strandat 1581.897 kb on - strandat 1581.939 kb on - strandat 1582.025 kb on - strandat 1582.025 kb on - strandat 1582.025 kb on - strandat 1582.102 kb on - strand, within AZOBR_RS07515at 1582.402 kb on + strand, within AZOBR_RS07515at 1582.402 kb on + strand, within AZOBR_RS07515at 1582.402 kb on + strand, within AZOBR_RS07515at 1582.406 kb on - strand, within AZOBR_RS07515at 1582.561 kb on + strand, within AZOBR_RS07515

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 1-octen-3-ol 0.6784116667 mM
remove
1,581,896 + +0.2
1,581,896 + -0.1
1,581,897 - +0.2
1,581,897 - -0.3
1,581,897 - -1.4
1,581,939 - -0.7
1,582,025 - +0.4
1,582,025 - -0.4
1,582,025 - -0.3
1,582,102 - AZOBR_RS07515 0.18 -0.4
1,582,402 + AZOBR_RS07515 0.61 -0.0
1,582,402 + AZOBR_RS07515 0.61 -0.1
1,582,402 + AZOBR_RS07515 0.61 +0.1
1,582,406 - AZOBR_RS07515 0.62 -1.3
1,582,561 + AZOBR_RS07515 0.84 -1.7

Or see this region's nucleotide sequence