Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS06495

Experiment: 1-octen-3-ol 0.6784116667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS06480 and AZOBR_RS06485 are separated by 6 nucleotidesAZOBR_RS06485 and AZOBR_RS06490 are separated by 60 nucleotidesAZOBR_RS06490 and AZOBR_RS06495 are separated by 80 nucleotidesAZOBR_RS06495 and AZOBR_RS06500 are separated by 159 nucleotides AZOBR_RS06480: AZOBR_RS06480 - hypothetical protein, at 1,371,825 to 1,373,735 _RS06480 AZOBR_RS06485: AZOBR_RS06485 - membrane protein, at 1,373,742 to 1,374,146 _RS06485 AZOBR_RS06490: AZOBR_RS06490 - hypothetical protein, at 1,374,207 to 1,374,410 _RS06490 AZOBR_RS06495: AZOBR_RS06495 - ABC transporter substrate-binding protein, at 1,374,491 to 1,375,459 _RS06495 AZOBR_RS06500: AZOBR_RS06500 - ABC transporter permease, at 1,375,619 to 1,376,518 _RS06500 Position (kb) 1374 1375 1376Strain fitness (log2 ratio) -1 0 1at 1373.535 kb on + strand, within AZOBR_RS06480at 1373.536 kb on - strand, within AZOBR_RS06480at 1373.536 kb on - strand, within AZOBR_RS06480at 1374.019 kb on + strand, within AZOBR_RS06485at 1374.020 kb on - strand, within AZOBR_RS06485at 1374.152 kb on + strandat 1374.153 kb on - strandat 1374.153 kb on - strandat 1374.184 kb on + strandat 1374.185 kb on - strandat 1374.185 kb on - strandat 1374.657 kb on - strand, within AZOBR_RS06495at 1374.983 kb on + strand, within AZOBR_RS06495at 1374.984 kb on - strand, within AZOBR_RS06495at 1375.136 kb on + strand, within AZOBR_RS06495at 1375.473 kb on - strandat 1375.473 kb on - strandat 1375.549 kb on + strandat 1375.549 kb on + strandat 1375.550 kb on - strandat 1375.665 kb on - strandat 1375.665 kb on - strandat 1375.688 kb on + strandat 1375.689 kb on - strandat 1375.689 kb on - strandat 1376.165 kb on + strand, within AZOBR_RS06500at 1376.364 kb on - strand, within AZOBR_RS06500

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-octen-3-ol 0.6784116667 mM
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1,373,535 + AZOBR_RS06480 0.89 +0.2
1,373,536 - AZOBR_RS06480 0.90 -0.9
1,373,536 - AZOBR_RS06480 0.90 -0.0
1,374,019 + AZOBR_RS06485 0.68 +1.0
1,374,020 - AZOBR_RS06485 0.69 -0.8
1,374,152 + -0.8
1,374,153 - +0.1
1,374,153 - -0.8
1,374,184 + -0.2
1,374,185 - -0.6
1,374,185 - -0.6
1,374,657 - AZOBR_RS06495 0.17 -0.4
1,374,983 + AZOBR_RS06495 0.51 -0.6
1,374,984 - AZOBR_RS06495 0.51 +0.7
1,375,136 + AZOBR_RS06495 0.67 -0.4
1,375,473 - -0.3
1,375,473 - +0.3
1,375,549 + -0.0
1,375,549 + -0.6
1,375,550 - -0.4
1,375,665 - -0.2
1,375,665 - -0.5
1,375,688 + -0.6
1,375,689 - -0.1
1,375,689 - -1.5
1,376,165 + AZOBR_RS06500 0.61 -0.3
1,376,364 - AZOBR_RS06500 0.83 -1.0

Or see this region's nucleotide sequence