Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS06265

Experiment: 1-octen-3-ol 0.6784116667 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAZOBR_RS06260 and AZOBR_RS06265 are separated by 121 nucleotidesAZOBR_RS06265 and AZOBR_RS06270 are separated by 180 nucleotides AZOBR_RS06260: AZOBR_RS06260 - hypothetical protein, at 1,324,357 to 1,325,370 _RS06260 AZOBR_RS06265: AZOBR_RS06265 - methyl-accepting chemotaxis protein, at 1,325,492 to 1,327,894 _RS06265 AZOBR_RS06270: AZOBR_RS06270 - ligase, at 1,328,075 to 1,329,259 _RS06270 Position (kb) 1325 1326 1327 1328Strain fitness (log2 ratio) -1 0 1 2at 1324.904 kb on - strand, within AZOBR_RS06260at 1325.091 kb on - strand, within AZOBR_RS06260at 1325.380 kb on - strandat 1325.392 kb on + strandat 1325.422 kb on + strandat 1325.423 kb on - strandat 1325.423 kb on - strandat 1325.423 kb on - strandat 1325.460 kb on + strandat 1325.461 kb on - strandat 1325.461 kb on - strandat 1325.461 kb on - strandat 1325.461 kb on - strandat 1325.468 kb on + strandat 1325.469 kb on - strandat 1325.469 kb on - strandat 1325.469 kb on - strandat 1325.469 kb on - strandat 1325.585 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 1-octen-3-ol 0.6784116667 mM
remove
1,324,904 - AZOBR_RS06260 0.54 +0.0
1,325,091 - AZOBR_RS06260 0.72 +0.2
1,325,380 - +0.6
1,325,392 + -0.0
1,325,422 + -0.0
1,325,423 - -0.3
1,325,423 - +0.0
1,325,423 - +0.5
1,325,460 + -0.3
1,325,461 - +1.2
1,325,461 - -0.4
1,325,461 - -0.4
1,325,461 - +0.2
1,325,468 + -0.2
1,325,469 - +2.0
1,325,469 - +0.0
1,325,469 - -0.2
1,325,469 - -1.6
1,325,585 + -0.2

Or see this region's nucleotide sequence