Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS01075

Experiment: 1-octen-3-ol 0.6784116667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS01065 and AZOBR_RS01070 overlap by 4 nucleotidesAZOBR_RS01070 and AZOBR_RS01075 overlap by 1 nucleotidesAZOBR_RS01075 and AZOBR_RS01080 are separated by 75 nucleotides AZOBR_RS01065: AZOBR_RS01065 - phosphopantothenate synthase, at 217,500 to 218,756 _RS01065 AZOBR_RS01070: AZOBR_RS01070 - deoxyuridine 5'-triphosphate nucleotidohydrolase, at 218,753 to 219,247 _RS01070 AZOBR_RS01075: AZOBR_RS01075 - Rrf2 family transcriptional regulator, at 219,247 to 219,702 _RS01075 AZOBR_RS01080: AZOBR_RS01080 - cysteine synthase, at 219,778 to 220,737 _RS01080 Position (kb) 219 220Strain fitness (log2 ratio) -1 0 1at 219.693 kb on + strandat 220.702 kb on + strandat 220.702 kb on + strandat 220.702 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-octen-3-ol 0.6784116667 mM
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219,693 + +0.5
220,702 + +0.7
220,702 + -0.2
220,702 + -0.7

Or see this region's nucleotide sequence