Experiment: 1X LB plate, 1:1 coculture with Sphingobium xenophagum Sin1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03234 and MPMX20_03235 are separated by 55 nucleotides MPMX20_03235 and MPMX20_03236 are separated by 54 nucleotides MPMX20_03236 and MPMX20_03237 are separated by 140 nucleotides MPMX20_03237 and MPMX20_03238 are separated by 74 nucleotides
MPMX20_03234: MPMX20_03234 - putative Nudix hydrolase YfcD, at 3,407,159 to 3,407,713
_03234
MPMX20_03235: MPMX20_03235 - Phosphodiesterase YfcE, at 3,407,769 to 3,408,320
_03235
MPMX20_03236: MPMX20_03236 - Glutathione S-transferase YfcF, at 3,408,375 to 3,409,019
_03236
MPMX20_03237: MPMX20_03237 - Disulfide-bond oxidoreductase YfcG, at 3,409,160 to 3,409,789
_03237
MPMX20_03238: MPMX20_03238 - Dihydroneopterin triphosphate 2'-epimerase, at 3,409,864 to 3,410,232
_03238
Position (kb)
3408
3409
3410 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5 at 3407.388 kb on + strand, within MPMX20_03234 at 3407.388 kb on + strand, within MPMX20_03234 at 3407.479 kb on - strand, within MPMX20_03234 at 3407.541 kb on + strand, within MPMX20_03234 at 3407.573 kb on + strand, within MPMX20_03234 at 3407.585 kb on + strand, within MPMX20_03234 at 3407.631 kb on + strand, within MPMX20_03234 at 3407.639 kb on - strand, within MPMX20_03234 at 3407.644 kb on - strand, within MPMX20_03234 at 3407.680 kb on + strand at 3407.680 kb on + strand at 3407.688 kb on - strand at 3407.702 kb on + strand at 3407.727 kb on + strand at 3407.843 kb on + strand, within MPMX20_03235 at 3407.869 kb on - strand, within MPMX20_03235 at 3407.870 kb on - strand, within MPMX20_03235 at 3407.901 kb on - strand, within MPMX20_03235 at 3407.901 kb on - strand, within MPMX20_03235 at 3407.952 kb on + strand, within MPMX20_03235 at 3407.960 kb on - strand, within MPMX20_03235 at 3408.017 kb on + strand, within MPMX20_03235 at 3408.026 kb on - strand, within MPMX20_03235 at 3408.094 kb on - strand, within MPMX20_03235 at 3408.118 kb on + strand, within MPMX20_03235 at 3408.118 kb on + strand, within MPMX20_03235 at 3408.126 kb on - strand, within MPMX20_03235 at 3408.167 kb on + strand, within MPMX20_03235 at 3408.197 kb on + strand, within MPMX20_03235 at 3408.199 kb on + strand, within MPMX20_03235 at 3408.331 kb on - strand at 3408.368 kb on + strand at 3408.372 kb on + strand at 3408.372 kb on + strand at 3408.406 kb on - strand at 3408.408 kb on + strand at 3408.408 kb on + strand at 3408.408 kb on + strand at 3408.408 kb on + strand at 3408.413 kb on + strand at 3408.416 kb on - strand at 3408.416 kb on - strand at 3408.416 kb on - strand at 3408.421 kb on - strand at 3408.467 kb on + strand, within MPMX20_03236 at 3408.492 kb on + strand, within MPMX20_03236 at 3408.492 kb on + strand, within MPMX20_03236 at 3408.500 kb on - strand, within MPMX20_03236 at 3408.528 kb on - strand, within MPMX20_03236 at 3408.531 kb on - strand, within MPMX20_03236 at 3408.582 kb on + strand, within MPMX20_03236 at 3408.610 kb on + strand, within MPMX20_03236 at 3408.618 kb on - strand, within MPMX20_03236 at 3408.618 kb on - strand, within MPMX20_03236 at 3408.645 kb on + strand, within MPMX20_03236 at 3408.647 kb on + strand, within MPMX20_03236 at 3408.705 kb on + strand, within MPMX20_03236 at 3408.705 kb on + strand, within MPMX20_03236 at 3408.705 kb on + strand, within MPMX20_03236 at 3408.710 kb on + strand, within MPMX20_03236 at 3408.750 kb on - strand, within MPMX20_03236 at 3408.759 kb on + strand, within MPMX20_03236 at 3408.815 kb on + strand, within MPMX20_03236 at 3408.815 kb on + strand, within MPMX20_03236 at 3408.823 kb on - strand, within MPMX20_03236 at 3408.837 kb on - strand, within MPMX20_03236 at 3408.839 kb on - strand, within MPMX20_03236 at 3408.847 kb on + strand, within MPMX20_03236 at 3408.852 kb on + strand, within MPMX20_03236 at 3408.852 kb on + strand, within MPMX20_03236 at 3408.852 kb on + strand, within MPMX20_03236 at 3408.855 kb on - strand, within MPMX20_03236 at 3408.860 kb on - strand, within MPMX20_03236 at 3408.860 kb on - strand, within MPMX20_03236 at 3408.860 kb on - strand, within MPMX20_03236 at 3408.867 kb on - strand, within MPMX20_03236 at 3408.895 kb on - strand, within MPMX20_03236 at 3408.937 kb on - strand, within MPMX20_03236 at 3408.955 kb on - strand at 3409.013 kb on + strand at 3409.014 kb on + strand at 3409.022 kb on - strand at 3409.069 kb on - strand at 3409.146 kb on + strand at 3409.159 kb on - strand at 3409.181 kb on - strand at 3409.194 kb on + strand at 3409.202 kb on - strand at 3409.253 kb on + strand, within MPMX20_03237 at 3409.253 kb on + strand, within MPMX20_03237 at 3409.261 kb on - strand, within MPMX20_03237 at 3409.273 kb on + strand, within MPMX20_03237 at 3409.281 kb on - strand, within MPMX20_03237 at 3409.281 kb on - strand, within MPMX20_03237 at 3409.281 kb on - strand, within MPMX20_03237 at 3409.306 kb on + strand, within MPMX20_03237 at 3409.390 kb on - strand, within MPMX20_03237 at 3409.422 kb on + strand, within MPMX20_03237 at 3409.422 kb on + strand, within MPMX20_03237 at 3409.422 kb on + strand, within MPMX20_03237 at 3409.430 kb on - strand, within MPMX20_03237 at 3409.479 kb on + strand, within MPMX20_03237 at 3409.487 kb on - strand, within MPMX20_03237 at 3409.507 kb on + strand, within MPMX20_03237 at 3409.584 kb on - strand, within MPMX20_03237 at 3409.586 kb on + strand, within MPMX20_03237 at 3409.594 kb on - strand, within MPMX20_03237 at 3409.594 kb on - strand, within MPMX20_03237 at 3409.674 kb on - strand, within MPMX20_03237 at 3409.712 kb on + strand, within MPMX20_03237 at 3409.745 kb on + strand at 3409.753 kb on - strand at 3409.753 kb on - strand at 3409.800 kb on + strand at 3409.813 kb on - strand at 3409.824 kb on + strand at 3409.827 kb on - strand at 3409.827 kb on - strand at 3409.851 kb on + strand at 3409.864 kb on - strand at 3409.930 kb on + strand, within MPMX20_03238 at 3409.955 kb on - strand, within MPMX20_03238 at 3409.971 kb on + strand, within MPMX20_03238 at 3409.998 kb on - strand, within MPMX20_03238
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Sphingobium xenophagum Sin1 remove 3,407,388 + MPMX20_03234 0.41 -1.8 3,407,388 + MPMX20_03234 0.41 -1.0 3,407,479 - MPMX20_03234 0.58 -0.0 3,407,541 + MPMX20_03234 0.69 +0.8 3,407,573 + MPMX20_03234 0.75 +2.1 3,407,585 + MPMX20_03234 0.77 -1.1 3,407,631 + MPMX20_03234 0.85 -1.3 3,407,639 - MPMX20_03234 0.86 +0.7 3,407,644 - MPMX20_03234 0.87 +0.3 3,407,680 + -1.0 3,407,680 + -0.9 3,407,688 - +0.4 3,407,702 + -1.6 3,407,727 + -0.3 3,407,843 + MPMX20_03235 0.13 +0.1 3,407,869 - MPMX20_03235 0.18 -1.2 3,407,870 - MPMX20_03235 0.18 +1.9 3,407,901 - MPMX20_03235 0.24 +0.5 3,407,901 - MPMX20_03235 0.24 +4.5 3,407,952 + MPMX20_03235 0.33 +5.0 3,407,960 - MPMX20_03235 0.35 +0.4 3,408,017 + MPMX20_03235 0.45 -1.0 3,408,026 - MPMX20_03235 0.47 +0.5 3,408,094 - MPMX20_03235 0.59 +0.8 3,408,118 + MPMX20_03235 0.63 -0.3 3,408,118 + MPMX20_03235 0.63 -1.1 3,408,126 - MPMX20_03235 0.65 +0.7 3,408,167 + MPMX20_03235 0.72 -0.4 3,408,197 + MPMX20_03235 0.78 +0.1 3,408,199 + MPMX20_03235 0.78 -0.6 3,408,331 - -0.7 3,408,368 + +0.3 3,408,372 + -0.1 3,408,372 + -1.3 3,408,406 - -0.4 3,408,408 + +0.1 3,408,408 + -0.4 3,408,408 + -1.2 3,408,408 + +1.1 3,408,413 + -1.4 3,408,416 - +1.1 3,408,416 - -0.3 3,408,416 - +0.7 3,408,421 - -1.3 3,408,467 + MPMX20_03236 0.14 +0.3 3,408,492 + MPMX20_03236 0.18 +0.8 3,408,492 + MPMX20_03236 0.18 -0.9 3,408,500 - MPMX20_03236 0.19 +1.5 3,408,528 - MPMX20_03236 0.24 -2.3 3,408,531 - MPMX20_03236 0.24 +0.0 3,408,582 + MPMX20_03236 0.32 -0.0 3,408,610 + MPMX20_03236 0.36 +0.8 3,408,618 - MPMX20_03236 0.38 +1.3 3,408,618 - MPMX20_03236 0.38 +0.5 3,408,645 + MPMX20_03236 0.42 +0.8 3,408,647 + MPMX20_03236 0.42 +0.4 3,408,705 + MPMX20_03236 0.51 +1.0 3,408,705 + MPMX20_03236 0.51 +1.0 3,408,705 + MPMX20_03236 0.51 +0.5 3,408,710 + MPMX20_03236 0.52 -1.7 3,408,750 - MPMX20_03236 0.58 -2.2 3,408,759 + MPMX20_03236 0.60 +0.4 3,408,815 + MPMX20_03236 0.68 +1.5 3,408,815 + MPMX20_03236 0.68 -1.2 3,408,823 - MPMX20_03236 0.69 +1.3 3,408,837 - MPMX20_03236 0.72 -2.0 3,408,839 - MPMX20_03236 0.72 -2.4 3,408,847 + MPMX20_03236 0.73 +0.4 3,408,852 + MPMX20_03236 0.74 -1.0 3,408,852 + MPMX20_03236 0.74 +0.3 3,408,852 + MPMX20_03236 0.74 +1.3 3,408,855 - MPMX20_03236 0.74 -1.4 3,408,860 - MPMX20_03236 0.75 -1.9 3,408,860 - MPMX20_03236 0.75 +0.8 3,408,860 - MPMX20_03236 0.75 +1.5 3,408,867 - MPMX20_03236 0.76 -1.5 3,408,895 - MPMX20_03236 0.81 +0.3 3,408,937 - MPMX20_03236 0.87 +0.8 3,408,955 - -0.5 3,409,013 + -1.5 3,409,014 + +0.5 3,409,022 - -0.3 3,409,069 - -1.5 3,409,146 + +1.5 3,409,159 - -1.0 3,409,181 - -2.7 3,409,194 + -2.0 3,409,202 - +0.5 3,409,253 + MPMX20_03237 0.15 +0.5 3,409,253 + MPMX20_03237 0.15 -1.5 3,409,261 - MPMX20_03237 0.16 -0.8 3,409,273 + MPMX20_03237 0.18 -0.8 3,409,281 - MPMX20_03237 0.19 +0.3 3,409,281 - MPMX20_03237 0.19 +2.1 3,409,281 - MPMX20_03237 0.19 -2.2 3,409,306 + MPMX20_03237 0.23 -1.6 3,409,390 - MPMX20_03237 0.37 +0.5 3,409,422 + MPMX20_03237 0.42 +2.2 3,409,422 + MPMX20_03237 0.42 -2.0 3,409,422 + MPMX20_03237 0.42 +0.8 3,409,430 - MPMX20_03237 0.43 -0.6 3,409,479 + MPMX20_03237 0.51 +1.5 3,409,487 - MPMX20_03237 0.52 -0.1 3,409,507 + MPMX20_03237 0.55 -0.1 3,409,584 - MPMX20_03237 0.67 -1.2 3,409,586 + MPMX20_03237 0.68 +1.3 3,409,594 - MPMX20_03237 0.69 -2.5 3,409,594 - MPMX20_03237 0.69 -0.9 3,409,674 - MPMX20_03237 0.82 +0.5 3,409,712 + MPMX20_03237 0.88 +0.0 3,409,745 + -1.0 3,409,753 - -1.2 3,409,753 - -0.6 3,409,800 + +0.3 3,409,813 - +1.4 3,409,824 + +0.8 3,409,827 - -1.5 3,409,827 - -0.3 3,409,851 + -0.3 3,409,864 - -0.1 3,409,930 + MPMX20_03238 0.18 -0.6 3,409,955 - MPMX20_03238 0.25 -2.5 3,409,971 + MPMX20_03238 0.29 -1.5 3,409,998 - MPMX20_03238 0.36 -1.3
Or see this region's nucleotide sequence