Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03236

Experiment: 1X LB plate, 1:1 coculture with Sphingobium xenophagum Sin1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03234 and MPMX20_03235 are separated by 55 nucleotidesMPMX20_03235 and MPMX20_03236 are separated by 54 nucleotidesMPMX20_03236 and MPMX20_03237 are separated by 140 nucleotidesMPMX20_03237 and MPMX20_03238 are separated by 74 nucleotides MPMX20_03234: MPMX20_03234 - putative Nudix hydrolase YfcD, at 3,407,159 to 3,407,713 _03234 MPMX20_03235: MPMX20_03235 - Phosphodiesterase YfcE, at 3,407,769 to 3,408,320 _03235 MPMX20_03236: MPMX20_03236 - Glutathione S-transferase YfcF, at 3,408,375 to 3,409,019 _03236 MPMX20_03237: MPMX20_03237 - Disulfide-bond oxidoreductase YfcG, at 3,409,160 to 3,409,789 _03237 MPMX20_03238: MPMX20_03238 - Dihydroneopterin triphosphate 2'-epimerase, at 3,409,864 to 3,410,232 _03238 Position (kb) 3408 3409 3410Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 3407.388 kb on + strand, within MPMX20_03234at 3407.388 kb on + strand, within MPMX20_03234at 3407.479 kb on - strand, within MPMX20_03234at 3407.541 kb on + strand, within MPMX20_03234at 3407.573 kb on + strand, within MPMX20_03234at 3407.585 kb on + strand, within MPMX20_03234at 3407.631 kb on + strand, within MPMX20_03234at 3407.639 kb on - strand, within MPMX20_03234at 3407.644 kb on - strand, within MPMX20_03234at 3407.680 kb on + strandat 3407.680 kb on + strandat 3407.688 kb on - strandat 3407.702 kb on + strandat 3407.727 kb on + strandat 3407.843 kb on + strand, within MPMX20_03235at 3407.869 kb on - strand, within MPMX20_03235at 3407.870 kb on - strand, within MPMX20_03235at 3407.901 kb on - strand, within MPMX20_03235at 3407.901 kb on - strand, within MPMX20_03235at 3407.952 kb on + strand, within MPMX20_03235at 3407.960 kb on - strand, within MPMX20_03235at 3408.017 kb on + strand, within MPMX20_03235at 3408.026 kb on - strand, within MPMX20_03235at 3408.094 kb on - strand, within MPMX20_03235at 3408.118 kb on + strand, within MPMX20_03235at 3408.118 kb on + strand, within MPMX20_03235at 3408.126 kb on - strand, within MPMX20_03235at 3408.167 kb on + strand, within MPMX20_03235at 3408.197 kb on + strand, within MPMX20_03235at 3408.199 kb on + strand, within MPMX20_03235at 3408.331 kb on - strandat 3408.368 kb on + strandat 3408.372 kb on + strandat 3408.372 kb on + strandat 3408.406 kb on - strandat 3408.408 kb on + strandat 3408.408 kb on + strandat 3408.408 kb on + strandat 3408.408 kb on + strandat 3408.413 kb on + strandat 3408.416 kb on - strandat 3408.416 kb on - strandat 3408.416 kb on - strandat 3408.421 kb on - strandat 3408.467 kb on + strand, within MPMX20_03236at 3408.492 kb on + strand, within MPMX20_03236at 3408.492 kb on + strand, within MPMX20_03236at 3408.500 kb on - strand, within MPMX20_03236at 3408.528 kb on - strand, within MPMX20_03236at 3408.531 kb on - strand, within MPMX20_03236at 3408.582 kb on + strand, within MPMX20_03236at 3408.610 kb on + strand, within MPMX20_03236at 3408.618 kb on - strand, within MPMX20_03236at 3408.618 kb on - strand, within MPMX20_03236at 3408.645 kb on + strand, within MPMX20_03236at 3408.647 kb on + strand, within MPMX20_03236at 3408.705 kb on + strand, within MPMX20_03236at 3408.705 kb on + strand, within MPMX20_03236at 3408.705 kb on + strand, within MPMX20_03236at 3408.710 kb on + strand, within MPMX20_03236at 3408.750 kb on - strand, within MPMX20_03236at 3408.759 kb on + strand, within MPMX20_03236at 3408.815 kb on + strand, within MPMX20_03236at 3408.815 kb on + strand, within MPMX20_03236at 3408.823 kb on - strand, within MPMX20_03236at 3408.837 kb on - strand, within MPMX20_03236at 3408.839 kb on - strand, within MPMX20_03236at 3408.847 kb on + strand, within MPMX20_03236at 3408.852 kb on + strand, within MPMX20_03236at 3408.852 kb on + strand, within MPMX20_03236at 3408.852 kb on + strand, within MPMX20_03236at 3408.855 kb on - strand, within MPMX20_03236at 3408.860 kb on - strand, within MPMX20_03236at 3408.860 kb on - strand, within MPMX20_03236at 3408.860 kb on - strand, within MPMX20_03236at 3408.867 kb on - strand, within MPMX20_03236at 3408.895 kb on - strand, within MPMX20_03236at 3408.937 kb on - strand, within MPMX20_03236at 3408.955 kb on - strandat 3409.013 kb on + strandat 3409.014 kb on + strandat 3409.022 kb on - strandat 3409.069 kb on - strandat 3409.146 kb on + strandat 3409.159 kb on - strandat 3409.181 kb on - strandat 3409.194 kb on + strandat 3409.202 kb on - strandat 3409.253 kb on + strand, within MPMX20_03237at 3409.253 kb on + strand, within MPMX20_03237at 3409.261 kb on - strand, within MPMX20_03237at 3409.273 kb on + strand, within MPMX20_03237at 3409.281 kb on - strand, within MPMX20_03237at 3409.281 kb on - strand, within MPMX20_03237at 3409.281 kb on - strand, within MPMX20_03237at 3409.306 kb on + strand, within MPMX20_03237at 3409.390 kb on - strand, within MPMX20_03237at 3409.422 kb on + strand, within MPMX20_03237at 3409.422 kb on + strand, within MPMX20_03237at 3409.422 kb on + strand, within MPMX20_03237at 3409.430 kb on - strand, within MPMX20_03237at 3409.479 kb on + strand, within MPMX20_03237at 3409.487 kb on - strand, within MPMX20_03237at 3409.507 kb on + strand, within MPMX20_03237at 3409.584 kb on - strand, within MPMX20_03237at 3409.586 kb on + strand, within MPMX20_03237at 3409.594 kb on - strand, within MPMX20_03237at 3409.594 kb on - strand, within MPMX20_03237at 3409.674 kb on - strand, within MPMX20_03237at 3409.712 kb on + strand, within MPMX20_03237at 3409.745 kb on + strandat 3409.753 kb on - strandat 3409.753 kb on - strandat 3409.800 kb on + strandat 3409.813 kb on - strandat 3409.824 kb on + strandat 3409.827 kb on - strandat 3409.827 kb on - strandat 3409.851 kb on + strandat 3409.864 kb on - strandat 3409.930 kb on + strand, within MPMX20_03238at 3409.955 kb on - strand, within MPMX20_03238at 3409.971 kb on + strand, within MPMX20_03238at 3409.998 kb on - strand, within MPMX20_03238

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Per-strain Table

Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Sphingobium xenophagum Sin1
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3,407,388 + MPMX20_03234 0.41 -1.8
3,407,388 + MPMX20_03234 0.41 -1.0
3,407,479 - MPMX20_03234 0.58 -0.0
3,407,541 + MPMX20_03234 0.69 +0.8
3,407,573 + MPMX20_03234 0.75 +2.1
3,407,585 + MPMX20_03234 0.77 -1.1
3,407,631 + MPMX20_03234 0.85 -1.3
3,407,639 - MPMX20_03234 0.86 +0.7
3,407,644 - MPMX20_03234 0.87 +0.3
3,407,680 + -1.0
3,407,680 + -0.9
3,407,688 - +0.4
3,407,702 + -1.6
3,407,727 + -0.3
3,407,843 + MPMX20_03235 0.13 +0.1
3,407,869 - MPMX20_03235 0.18 -1.2
3,407,870 - MPMX20_03235 0.18 +1.9
3,407,901 - MPMX20_03235 0.24 +0.5
3,407,901 - MPMX20_03235 0.24 +4.5
3,407,952 + MPMX20_03235 0.33 +5.0
3,407,960 - MPMX20_03235 0.35 +0.4
3,408,017 + MPMX20_03235 0.45 -1.0
3,408,026 - MPMX20_03235 0.47 +0.5
3,408,094 - MPMX20_03235 0.59 +0.8
3,408,118 + MPMX20_03235 0.63 -0.3
3,408,118 + MPMX20_03235 0.63 -1.1
3,408,126 - MPMX20_03235 0.65 +0.7
3,408,167 + MPMX20_03235 0.72 -0.4
3,408,197 + MPMX20_03235 0.78 +0.1
3,408,199 + MPMX20_03235 0.78 -0.6
3,408,331 - -0.7
3,408,368 + +0.3
3,408,372 + -0.1
3,408,372 + -1.3
3,408,406 - -0.4
3,408,408 + +0.1
3,408,408 + -0.4
3,408,408 + -1.2
3,408,408 + +1.1
3,408,413 + -1.4
3,408,416 - +1.1
3,408,416 - -0.3
3,408,416 - +0.7
3,408,421 - -1.3
3,408,467 + MPMX20_03236 0.14 +0.3
3,408,492 + MPMX20_03236 0.18 +0.8
3,408,492 + MPMX20_03236 0.18 -0.9
3,408,500 - MPMX20_03236 0.19 +1.5
3,408,528 - MPMX20_03236 0.24 -2.3
3,408,531 - MPMX20_03236 0.24 +0.0
3,408,582 + MPMX20_03236 0.32 -0.0
3,408,610 + MPMX20_03236 0.36 +0.8
3,408,618 - MPMX20_03236 0.38 +1.3
3,408,618 - MPMX20_03236 0.38 +0.5
3,408,645 + MPMX20_03236 0.42 +0.8
3,408,647 + MPMX20_03236 0.42 +0.4
3,408,705 + MPMX20_03236 0.51 +1.0
3,408,705 + MPMX20_03236 0.51 +1.0
3,408,705 + MPMX20_03236 0.51 +0.5
3,408,710 + MPMX20_03236 0.52 -1.7
3,408,750 - MPMX20_03236 0.58 -2.2
3,408,759 + MPMX20_03236 0.60 +0.4
3,408,815 + MPMX20_03236 0.68 +1.5
3,408,815 + MPMX20_03236 0.68 -1.2
3,408,823 - MPMX20_03236 0.69 +1.3
3,408,837 - MPMX20_03236 0.72 -2.0
3,408,839 - MPMX20_03236 0.72 -2.4
3,408,847 + MPMX20_03236 0.73 +0.4
3,408,852 + MPMX20_03236 0.74 -1.0
3,408,852 + MPMX20_03236 0.74 +0.3
3,408,852 + MPMX20_03236 0.74 +1.3
3,408,855 - MPMX20_03236 0.74 -1.4
3,408,860 - MPMX20_03236 0.75 -1.9
3,408,860 - MPMX20_03236 0.75 +0.8
3,408,860 - MPMX20_03236 0.75 +1.5
3,408,867 - MPMX20_03236 0.76 -1.5
3,408,895 - MPMX20_03236 0.81 +0.3
3,408,937 - MPMX20_03236 0.87 +0.8
3,408,955 - -0.5
3,409,013 + -1.5
3,409,014 + +0.5
3,409,022 - -0.3
3,409,069 - -1.5
3,409,146 + +1.5
3,409,159 - -1.0
3,409,181 - -2.7
3,409,194 + -2.0
3,409,202 - +0.5
3,409,253 + MPMX20_03237 0.15 +0.5
3,409,253 + MPMX20_03237 0.15 -1.5
3,409,261 - MPMX20_03237 0.16 -0.8
3,409,273 + MPMX20_03237 0.18 -0.8
3,409,281 - MPMX20_03237 0.19 +0.3
3,409,281 - MPMX20_03237 0.19 +2.1
3,409,281 - MPMX20_03237 0.19 -2.2
3,409,306 + MPMX20_03237 0.23 -1.6
3,409,390 - MPMX20_03237 0.37 +0.5
3,409,422 + MPMX20_03237 0.42 +2.2
3,409,422 + MPMX20_03237 0.42 -2.0
3,409,422 + MPMX20_03237 0.42 +0.8
3,409,430 - MPMX20_03237 0.43 -0.6
3,409,479 + MPMX20_03237 0.51 +1.5
3,409,487 - MPMX20_03237 0.52 -0.1
3,409,507 + MPMX20_03237 0.55 -0.1
3,409,584 - MPMX20_03237 0.67 -1.2
3,409,586 + MPMX20_03237 0.68 +1.3
3,409,594 - MPMX20_03237 0.69 -2.5
3,409,594 - MPMX20_03237 0.69 -0.9
3,409,674 - MPMX20_03237 0.82 +0.5
3,409,712 + MPMX20_03237 0.88 +0.0
3,409,745 + -1.0
3,409,753 - -1.2
3,409,753 - -0.6
3,409,800 + +0.3
3,409,813 - +1.4
3,409,824 + +0.8
3,409,827 - -1.5
3,409,827 - -0.3
3,409,851 + -0.3
3,409,864 - -0.1
3,409,930 + MPMX20_03238 0.18 -0.6
3,409,955 - MPMX20_03238 0.25 -2.5
3,409,971 + MPMX20_03238 0.29 -1.5
3,409,998 - MPMX20_03238 0.36 -1.3

Or see this region's nucleotide sequence