Experiment: 1X LB plate, 1:1 coculture with Sphingobium xenophagum Sin1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01389 and MPMX20_01390 are separated by 180 nucleotides MPMX20_01390 and MPMX20_01391 overlap by 1 nucleotides MPMX20_01391 and MPMX20_01392 are separated by 2 nucleotides
MPMX20_01389: MPMX20_01389 - Multidrug efflux pump accessory protein AcrZ, at 1,452,008 to 1,452,157
_01389
MPMX20_01390: MPMX20_01390 - Molybdate-binding protein ModA, at 1,452,338 to 1,453,111
_01390
MPMX20_01391: MPMX20_01391 - Molybdenum transport system permease protein ModB, at 1,453,111 to 1,453,800
_01391
MPMX20_01392: MPMX20_01392 - Vitamin B12 import ATP-binding protein BtuD, at 1,453,803 to 1,454,861
_01392
Position (kb)
1453
1454 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1452.134 kb on + strand, within MPMX20_01389 at 1452.142 kb on - strand, within MPMX20_01389 at 1452.142 kb on - strand, within MPMX20_01389 at 1452.172 kb on + strand at 1452.244 kb on + strand at 1452.244 kb on + strand at 1452.244 kb on + strand at 1452.244 kb on + strand at 1452.274 kb on - strand at 1452.345 kb on + strand at 1452.353 kb on - strand at 1452.353 kb on - strand at 1452.353 kb on - strand at 1452.383 kb on + strand at 1452.409 kb on - strand at 1452.409 kb on - strand at 1452.414 kb on - strand at 1452.414 kb on - strand at 1452.458 kb on + strand, within MPMX20_01390 at 1452.463 kb on + strand, within MPMX20_01390 at 1452.488 kb on - strand, within MPMX20_01390 at 1452.503 kb on - strand, within MPMX20_01390 at 1452.579 kb on - strand, within MPMX20_01390 at 1452.584 kb on + strand, within MPMX20_01390 at 1452.722 kb on + strand, within MPMX20_01390 at 1452.730 kb on - strand, within MPMX20_01390 at 1452.765 kb on + strand, within MPMX20_01390 at 1452.787 kb on + strand, within MPMX20_01390 at 1452.787 kb on + strand, within MPMX20_01390 at 1452.795 kb on - strand, within MPMX20_01390 at 1452.831 kb on + strand, within MPMX20_01390 at 1452.851 kb on - strand, within MPMX20_01390 at 1452.872 kb on + strand, within MPMX20_01390 at 1452.891 kb on - strand, within MPMX20_01390 at 1452.946 kb on + strand, within MPMX20_01390 at 1452.989 kb on + strand, within MPMX20_01390 at 1453.054 kb on + strand at 1453.055 kb on - strand at 1453.062 kb on - strand at 1453.070 kb on - strand at 1453.089 kb on - strand at 1453.141 kb on + strand at 1453.141 kb on + strand at 1453.141 kb on + strand at 1453.141 kb on + strand at 1453.141 kb on + strand at 1453.149 kb on - strand at 1453.226 kb on - strand, within MPMX20_01391 at 1453.238 kb on + strand, within MPMX20_01391 at 1453.358 kb on + strand, within MPMX20_01391 at 1453.358 kb on + strand, within MPMX20_01391 at 1453.366 kb on - strand, within MPMX20_01391 at 1453.431 kb on + strand, within MPMX20_01391 at 1453.472 kb on + strand, within MPMX20_01391 at 1453.486 kb on + strand, within MPMX20_01391 at 1453.570 kb on + strand, within MPMX20_01391 at 1453.570 kb on + strand, within MPMX20_01391 at 1453.578 kb on - strand, within MPMX20_01391 at 1453.578 kb on - strand, within MPMX20_01391 at 1453.578 kb on - strand, within MPMX20_01391 at 1453.578 kb on - strand, within MPMX20_01391 at 1453.710 kb on + strand, within MPMX20_01391 at 1453.773 kb on + strand at 1453.781 kb on - strand at 1453.800 kb on - strand at 1453.820 kb on - strand at 1453.889 kb on - strand at 1454.105 kb on + strand, within MPMX20_01392 at 1454.163 kb on + strand, within MPMX20_01392 at 1454.163 kb on + strand, within MPMX20_01392 at 1454.171 kb on - strand, within MPMX20_01392 at 1454.182 kb on - strand, within MPMX20_01392 at 1454.205 kb on - strand, within MPMX20_01392 at 1454.222 kb on - strand, within MPMX20_01392 at 1454.311 kb on + strand, within MPMX20_01392 at 1454.311 kb on + strand, within MPMX20_01392 at 1454.314 kb on - strand, within MPMX20_01392 at 1454.348 kb on + strand, within MPMX20_01392 at 1454.348 kb on + strand, within MPMX20_01392 at 1454.349 kb on + strand, within MPMX20_01392 at 1454.412 kb on - strand, within MPMX20_01392 at 1454.414 kb on + strand, within MPMX20_01392 at 1454.419 kb on + strand, within MPMX20_01392 at 1454.419 kb on + strand, within MPMX20_01392 at 1454.419 kb on + strand, within MPMX20_01392 at 1454.427 kb on - strand, within MPMX20_01392 at 1454.427 kb on - strand, within MPMX20_01392 at 1454.455 kb on - strand, within MPMX20_01392 at 1454.503 kb on + strand, within MPMX20_01392 at 1454.503 kb on + strand, within MPMX20_01392 at 1454.503 kb on + strand, within MPMX20_01392 at 1454.503 kb on + strand, within MPMX20_01392 at 1454.503 kb on + strand, within MPMX20_01392 at 1454.503 kb on + strand, within MPMX20_01392 at 1454.511 kb on - strand, within MPMX20_01392 at 1454.511 kb on - strand, within MPMX20_01392 at 1454.511 kb on - strand, within MPMX20_01392 at 1454.511 kb on - strand, within MPMX20_01392 at 1454.511 kb on - strand, within MPMX20_01392 at 1454.555 kb on + strand, within MPMX20_01392 at 1454.578 kb on - strand, within MPMX20_01392 at 1454.615 kb on + strand, within MPMX20_01392 at 1454.615 kb on + strand, within MPMX20_01392 at 1454.664 kb on + strand, within MPMX20_01392 at 1454.729 kb on + strand, within MPMX20_01392 at 1454.737 kb on - strand, within MPMX20_01392 at 1454.748 kb on - strand, within MPMX20_01392 at 1454.755 kb on + strand, within MPMX20_01392 at 1454.779 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Sphingobium xenophagum Sin1 remove 1,452,134 + MPMX20_01389 0.84 -1.1 1,452,142 - MPMX20_01389 0.89 -1.0 1,452,142 - MPMX20_01389 0.89 -0.6 1,452,172 + +3.1 1,452,244 + +0.1 1,452,244 + +0.1 1,452,244 + -1.4 1,452,244 + +0.3 1,452,274 - +0.2 1,452,345 + +0.1 1,452,353 - +1.0 1,452,353 - -0.2 1,452,353 - -1.1 1,452,383 + -1.0 1,452,409 - +0.7 1,452,409 - -0.5 1,452,414 - -1.3 1,452,414 - +2.5 1,452,458 + MPMX20_01390 0.16 +0.6 1,452,463 + MPMX20_01390 0.16 -0.4 1,452,488 - MPMX20_01390 0.19 -1.2 1,452,503 - MPMX20_01390 0.21 +1.6 1,452,579 - MPMX20_01390 0.31 -1.7 1,452,584 + MPMX20_01390 0.32 +1.1 1,452,722 + MPMX20_01390 0.50 -0.0 1,452,730 - MPMX20_01390 0.51 -1.0 1,452,765 + MPMX20_01390 0.55 -1.1 1,452,787 + MPMX20_01390 0.58 -0.7 1,452,787 + MPMX20_01390 0.58 +1.3 1,452,795 - MPMX20_01390 0.59 +1.7 1,452,831 + MPMX20_01390 0.64 +0.5 1,452,851 - MPMX20_01390 0.66 -1.1 1,452,872 + MPMX20_01390 0.69 +1.0 1,452,891 - MPMX20_01390 0.71 +1.5 1,452,946 + MPMX20_01390 0.79 -0.6 1,452,989 + MPMX20_01390 0.84 -0.5 1,453,054 + -0.3 1,453,055 - +0.1 1,453,062 - +1.5 1,453,070 - +3.1 1,453,089 - +1.1 1,453,141 + -0.7 1,453,141 + +0.3 1,453,141 + -1.8 1,453,141 + -2.1 1,453,141 + +1.1 1,453,149 - -0.9 1,453,226 - MPMX20_01391 0.17 -0.5 1,453,238 + MPMX20_01391 0.18 -1.5 1,453,358 + MPMX20_01391 0.36 -1.6 1,453,358 + MPMX20_01391 0.36 -1.3 1,453,366 - MPMX20_01391 0.37 -0.6 1,453,431 + MPMX20_01391 0.46 -0.2 1,453,472 + MPMX20_01391 0.52 -0.1 1,453,486 + MPMX20_01391 0.54 +2.1 1,453,570 + MPMX20_01391 0.67 +0.1 1,453,570 + MPMX20_01391 0.67 -0.5 1,453,578 - MPMX20_01391 0.68 +0.6 1,453,578 - MPMX20_01391 0.68 -0.3 1,453,578 - MPMX20_01391 0.68 -1.5 1,453,578 - MPMX20_01391 0.68 -0.2 1,453,710 + MPMX20_01391 0.87 -0.9 1,453,773 + -0.3 1,453,781 - +0.5 1,453,800 - +3.1 1,453,820 - -0.8 1,453,889 - +0.4 1,454,105 + MPMX20_01392 0.29 +0.9 1,454,163 + MPMX20_01392 0.34 -0.7 1,454,163 + MPMX20_01392 0.34 +2.1 1,454,171 - MPMX20_01392 0.35 -1.7 1,454,182 - MPMX20_01392 0.36 +2.1 1,454,205 - MPMX20_01392 0.38 -0.4 1,454,222 - MPMX20_01392 0.40 -1.1 1,454,311 + MPMX20_01392 0.48 +0.5 1,454,311 + MPMX20_01392 0.48 +1.5 1,454,314 - MPMX20_01392 0.48 -0.3 1,454,348 + MPMX20_01392 0.51 +0.1 1,454,348 + MPMX20_01392 0.51 -0.2 1,454,349 + MPMX20_01392 0.52 +0.2 1,454,412 - MPMX20_01392 0.58 -0.5 1,454,414 + MPMX20_01392 0.58 -1.8 1,454,419 + MPMX20_01392 0.58 -2.9 1,454,419 + MPMX20_01392 0.58 +1.4 1,454,419 + MPMX20_01392 0.58 -1.7 1,454,427 - MPMX20_01392 0.59 +2.3 1,454,427 - MPMX20_01392 0.59 -1.0 1,454,455 - MPMX20_01392 0.62 -2.1 1,454,503 + MPMX20_01392 0.66 +2.4 1,454,503 + MPMX20_01392 0.66 -1.2 1,454,503 + MPMX20_01392 0.66 -0.2 1,454,503 + MPMX20_01392 0.66 -0.1 1,454,503 + MPMX20_01392 0.66 -2.9 1,454,503 + MPMX20_01392 0.66 -0.7 1,454,511 - MPMX20_01392 0.67 +0.8 1,454,511 - MPMX20_01392 0.67 +1.5 1,454,511 - MPMX20_01392 0.67 +0.1 1,454,511 - MPMX20_01392 0.67 -0.7 1,454,511 - MPMX20_01392 0.67 -1.3 1,454,555 + MPMX20_01392 0.71 -0.8 1,454,578 - MPMX20_01392 0.73 -3.2 1,454,615 + MPMX20_01392 0.77 +0.3 1,454,615 + MPMX20_01392 0.77 -1.1 1,454,664 + MPMX20_01392 0.81 +0.1 1,454,729 + MPMX20_01392 0.87 -1.3 1,454,737 - MPMX20_01392 0.88 +1.2 1,454,748 - MPMX20_01392 0.89 -0.3 1,454,755 + MPMX20_01392 0.90 -0.7 1,454,779 + +1.8
Or see this region's nucleotide sequence