Experiment: 0.1X LB plate, 1:1 coculture with Paraburkholderia pittii CO4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03762 and MPMX20_03763 are separated by 125 nucleotides MPMX20_03763 and MPMX20_03764 are separated by 23 nucleotides MPMX20_03764 and MPMX20_03765 are separated by 430 nucleotides
MPMX20_03762: MPMX20_03762 - Glycine dehydrogenase (decarboxylating), at 3,963,260 to 3,966,133
_03762
MPMX20_03763: MPMX20_03763 - Glycine cleavage system H protein, at 3,966,259 to 3,966,648
_03763
MPMX20_03764: MPMX20_03764 - Aminomethyltransferase, at 3,966,672 to 3,967,766
_03764
MPMX20_03765: MPMX20_03765 - 2-octaprenylphenol hydroxylase, at 3,968,197 to 3,969,399
_03765
Position (kb)
3966
3967
3968 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 3965.695 kb on - strand, within MPMX20_03762 at 3965.753 kb on - strand, within MPMX20_03762 at 3965.755 kb on - strand, within MPMX20_03762 at 3965.768 kb on + strand, within MPMX20_03762 at 3965.768 kb on + strand, within MPMX20_03762 at 3965.853 kb on + strand at 3965.864 kb on + strand at 3965.864 kb on + strand at 3965.868 kb on - strand at 3965.872 kb on - strand at 3965.872 kb on - strand at 3965.888 kb on - strand at 3965.895 kb on + strand at 3965.896 kb on - strand at 3965.968 kb on - strand at 3965.983 kb on - strand at 3966.039 kb on + strand at 3966.115 kb on + strand at 3966.115 kb on + strand at 3966.115 kb on + strand at 3966.115 kb on + strand at 3966.115 kb on + strand at 3966.123 kb on - strand at 3966.123 kb on - strand at 3966.181 kb on - strand at 3966.191 kb on + strand at 3966.193 kb on - strand at 3966.196 kb on + strand at 3966.222 kb on - strand at 3966.223 kb on + strand at 3966.223 kb on + strand at 3966.226 kb on - strand at 3966.231 kb on - strand at 3966.231 kb on - strand at 3966.233 kb on + strand at 3966.257 kb on - strand at 3966.257 kb on - strand at 3966.258 kb on - strand at 3966.258 kb on - strand at 3966.274 kb on - strand at 3966.376 kb on - strand, within MPMX20_03763 at 3966.378 kb on + strand, within MPMX20_03763 at 3966.386 kb on - strand, within MPMX20_03763 at 3966.386 kb on - strand, within MPMX20_03763 at 3966.386 kb on - strand, within MPMX20_03763 at 3966.394 kb on - strand, within MPMX20_03763 at 3966.469 kb on - strand, within MPMX20_03763 at 3966.486 kb on - strand, within MPMX20_03763 at 3966.506 kb on + strand, within MPMX20_03763 at 3966.572 kb on + strand, within MPMX20_03763 at 3966.572 kb on - strand, within MPMX20_03763 at 3966.580 kb on - strand, within MPMX20_03763 at 3966.741 kb on + strand at 3966.788 kb on + strand, within MPMX20_03764 at 3966.899 kb on - strand, within MPMX20_03764 at 3967.013 kb on - strand, within MPMX20_03764 at 3967.072 kb on - strand, within MPMX20_03764 at 3967.073 kb on - strand, within MPMX20_03764 at 3967.126 kb on + strand, within MPMX20_03764 at 3967.240 kb on - strand, within MPMX20_03764 at 3967.250 kb on + strand, within MPMX20_03764 at 3967.267 kb on + strand, within MPMX20_03764 at 3967.267 kb on + strand, within MPMX20_03764 at 3967.267 kb on + strand, within MPMX20_03764 at 3967.275 kb on - strand, within MPMX20_03764 at 3967.275 kb on - strand, within MPMX20_03764 at 3967.275 kb on - strand, within MPMX20_03764 at 3967.275 kb on - strand, within MPMX20_03764 at 3967.275 kb on - strand, within MPMX20_03764 at 3967.275 kb on - strand, within MPMX20_03764 at 3967.277 kb on + strand, within MPMX20_03764 at 3967.277 kb on + strand, within MPMX20_03764 at 3967.277 kb on + strand, within MPMX20_03764 at 3967.277 kb on + strand, within MPMX20_03764 at 3967.285 kb on - strand, within MPMX20_03764 at 3967.300 kb on + strand, within MPMX20_03764 at 3967.300 kb on + strand, within MPMX20_03764 at 3967.300 kb on + strand, within MPMX20_03764 at 3967.300 kb on + strand, within MPMX20_03764 at 3967.300 kb on + strand, within MPMX20_03764 at 3967.300 kb on + strand, within MPMX20_03764 at 3967.300 kb on + strand, within MPMX20_03764 at 3967.300 kb on + strand, within MPMX20_03764 at 3967.300 kb on + strand, within MPMX20_03764 at 3967.308 kb on - strand, within MPMX20_03764 at 3967.308 kb on - strand, within MPMX20_03764 at 3967.308 kb on - strand, within MPMX20_03764 at 3967.308 kb on - strand, within MPMX20_03764 at 3967.308 kb on - strand, within MPMX20_03764 at 3967.308 kb on - strand, within MPMX20_03764 at 3967.308 kb on - strand, within MPMX20_03764 at 3967.308 kb on - strand, within MPMX20_03764 at 3967.308 kb on - strand, within MPMX20_03764 at 3967.308 kb on - strand, within MPMX20_03764 at 3967.308 kb on - strand, within MPMX20_03764 at 3967.365 kb on - strand, within MPMX20_03764 at 3967.369 kb on + strand, within MPMX20_03764 at 3967.375 kb on + strand, within MPMX20_03764 at 3967.377 kb on - strand, within MPMX20_03764 at 3967.391 kb on - strand, within MPMX20_03764 at 3967.391 kb on - strand, within MPMX20_03764 at 3967.505 kb on + strand, within MPMX20_03764 at 3967.710 kb on + strand at 3967.733 kb on + strand at 3967.743 kb on + strand at 3967.743 kb on + strand at 3967.788 kb on + strand at 3967.801 kb on - strand at 3967.808 kb on + strand at 3967.808 kb on + strand at 3967.808 kb on + strand at 3967.810 kb on + strand at 3967.810 kb on + strand at 3967.810 kb on + strand at 3967.813 kb on + strand at 3967.816 kb on - strand at 3967.816 kb on - strand at 3967.818 kb on - strand at 3967.818 kb on - strand at 3967.818 kb on - strand at 3967.818 kb on - strand at 3967.818 kb on - strand at 3967.818 kb on - strand at 3967.936 kb on + strand at 3967.978 kb on - strand at 3967.978 kb on - strand at 3967.988 kb on - strand at 3967.990 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, 1:1 coculture with Paraburkholderia pittii CO4 remove 3,965,695 - MPMX20_03762 0.85 -0.7 3,965,753 - MPMX20_03762 0.87 +2.6 3,965,755 - MPMX20_03762 0.87 -0.6 3,965,768 + MPMX20_03762 0.87 +1.3 3,965,768 + MPMX20_03762 0.87 -1.8 3,965,853 + +0.7 3,965,864 + -0.6 3,965,864 + -0.7 3,965,868 - -1.2 3,965,872 - -1.2 3,965,872 - -0.4 3,965,888 - -0.7 3,965,895 + -0.4 3,965,896 - -1.1 3,965,968 - -1.0 3,965,983 - +4.0 3,966,039 + +1.3 3,966,115 + -1.0 3,966,115 + -0.8 3,966,115 + -3.2 3,966,115 + -0.5 3,966,115 + +0.0 3,966,123 - +0.0 3,966,123 - -2.2 3,966,181 - -1.0 3,966,191 + +1.6 3,966,193 - +0.6 3,966,196 + +0.3 3,966,222 - +0.5 3,966,223 + -1.6 3,966,223 + +1.1 3,966,226 - +0.2 3,966,231 - -0.6 3,966,231 - -0.6 3,966,233 + -0.8 3,966,257 - -0.7 3,966,257 - -1.5 3,966,258 - -0.2 3,966,258 - +0.7 3,966,274 - -1.5 3,966,376 - MPMX20_03763 0.30 -2.5 3,966,378 + MPMX20_03763 0.31 +0.3 3,966,386 - MPMX20_03763 0.33 +1.0 3,966,386 - MPMX20_03763 0.33 -0.4 3,966,386 - MPMX20_03763 0.33 +0.6 3,966,394 - MPMX20_03763 0.35 -1.6 3,966,469 - MPMX20_03763 0.54 -0.8 3,966,486 - MPMX20_03763 0.58 -3.6 3,966,506 + MPMX20_03763 0.63 -1.1 3,966,572 + MPMX20_03763 0.80 -0.6 3,966,572 - MPMX20_03763 0.80 -0.7 3,966,580 - MPMX20_03763 0.82 -0.6 3,966,741 + -1.7 3,966,788 + MPMX20_03764 0.11 +0.6 3,966,899 - MPMX20_03764 0.21 -1.7 3,967,013 - MPMX20_03764 0.31 -0.2 3,967,072 - MPMX20_03764 0.37 -1.5 3,967,073 - MPMX20_03764 0.37 -1.7 3,967,126 + MPMX20_03764 0.41 -0.9 3,967,240 - MPMX20_03764 0.52 -2.5 3,967,250 + MPMX20_03764 0.53 -0.2 3,967,267 + MPMX20_03764 0.54 -1.2 3,967,267 + MPMX20_03764 0.54 +0.5 3,967,267 + MPMX20_03764 0.54 +1.0 3,967,275 - MPMX20_03764 0.55 -1.7 3,967,275 - MPMX20_03764 0.55 -1.0 3,967,275 - MPMX20_03764 0.55 +1.4 3,967,275 - MPMX20_03764 0.55 -2.0 3,967,275 - MPMX20_03764 0.55 -1.4 3,967,275 - MPMX20_03764 0.55 -1.3 3,967,277 + MPMX20_03764 0.55 -3.0 3,967,277 + MPMX20_03764 0.55 -1.8 3,967,277 + MPMX20_03764 0.55 -0.9 3,967,277 + MPMX20_03764 0.55 +0.3 3,967,285 - MPMX20_03764 0.56 +0.0 3,967,300 + MPMX20_03764 0.57 -2.4 3,967,300 + MPMX20_03764 0.57 -0.1 3,967,300 + MPMX20_03764 0.57 -2.2 3,967,300 + MPMX20_03764 0.57 -3.5 3,967,300 + MPMX20_03764 0.57 -0.1 3,967,300 + MPMX20_03764 0.57 +0.6 3,967,300 + MPMX20_03764 0.57 -0.2 3,967,300 + MPMX20_03764 0.57 +0.4 3,967,300 + MPMX20_03764 0.57 +0.5 3,967,308 - MPMX20_03764 0.58 +1.2 3,967,308 - MPMX20_03764 0.58 -2.7 3,967,308 - MPMX20_03764 0.58 -1.4 3,967,308 - MPMX20_03764 0.58 -1.3 3,967,308 - MPMX20_03764 0.58 -2.9 3,967,308 - MPMX20_03764 0.58 -1.0 3,967,308 - MPMX20_03764 0.58 -0.6 3,967,308 - MPMX20_03764 0.58 -0.3 3,967,308 - MPMX20_03764 0.58 -1.8 3,967,308 - MPMX20_03764 0.58 -2.7 3,967,308 - MPMX20_03764 0.58 -1.0 3,967,365 - MPMX20_03764 0.63 -1.3 3,967,369 + MPMX20_03764 0.64 -1.7 3,967,375 + MPMX20_03764 0.64 -0.6 3,967,377 - MPMX20_03764 0.64 -1.4 3,967,391 - MPMX20_03764 0.66 -0.6 3,967,391 - MPMX20_03764 0.66 -1.2 3,967,505 + MPMX20_03764 0.76 +0.7 3,967,710 + +0.8 3,967,733 + -1.0 3,967,743 + -1.1 3,967,743 + +0.0 3,967,788 + -1.0 3,967,801 - -0.3 3,967,808 + -2.2 3,967,808 + -1.1 3,967,808 + -2.7 3,967,810 + -1.4 3,967,810 + -0.5 3,967,810 + -1.5 3,967,813 + -0.9 3,967,816 - -1.5 3,967,816 - +0.6 3,967,818 - -1.0 3,967,818 - +1.0 3,967,818 - +0.7 3,967,818 - +2.3 3,967,818 - +0.8 3,967,818 - -2.2 3,967,936 + -1.5 3,967,978 - +0.1 3,967,978 - -1.1 3,967,988 - +0.0 3,967,990 + +0.6
Or see this region's nucleotide sequence