Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03239

Experiment: 0.1X LB plate, 1:1 coculture with Paraburkholderia pittii CO4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03237 and MPMX20_03238 are separated by 74 nucleotidesMPMX20_03238 and MPMX20_03239 are separated by 13 nucleotidesMPMX20_03239 and MPMX20_03240 are separated by 134 nucleotidesMPMX20_03240 and MPMX20_03241 are separated by 47 nucleotides MPMX20_03237: MPMX20_03237 - Disulfide-bond oxidoreductase YfcG, at 3,409,160 to 3,409,789 _03237 MPMX20_03238: MPMX20_03238 - Dihydroneopterin triphosphate 2'-epimerase, at 3,409,864 to 3,410,232 _03238 MPMX20_03239: MPMX20_03239 - Epimerase family protein, at 3,410,246 to 3,411,139 _03239 MPMX20_03240: MPMX20_03240 - hypothetical protein, at 3,411,274 to 3,411,690 _03240 MPMX20_03241: MPMX20_03241 - Histidine transport ATP-binding protein HisP, at 3,411,738 to 3,412,511 _03241 Position (kb) 3410 3411 3412Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 3409.253 kb on + strand, within MPMX20_03237at 3409.253 kb on + strand, within MPMX20_03237at 3409.261 kb on - strand, within MPMX20_03237at 3409.273 kb on + strand, within MPMX20_03237at 3409.281 kb on - strand, within MPMX20_03237at 3409.281 kb on - strand, within MPMX20_03237at 3409.281 kb on - strand, within MPMX20_03237at 3409.306 kb on + strand, within MPMX20_03237at 3409.390 kb on - strand, within MPMX20_03237at 3409.422 kb on + strand, within MPMX20_03237at 3409.422 kb on + strand, within MPMX20_03237at 3409.422 kb on + strand, within MPMX20_03237at 3409.430 kb on - strand, within MPMX20_03237at 3409.479 kb on + strand, within MPMX20_03237at 3409.487 kb on - strand, within MPMX20_03237at 3409.507 kb on + strand, within MPMX20_03237at 3409.584 kb on - strand, within MPMX20_03237at 3409.586 kb on + strand, within MPMX20_03237at 3409.594 kb on - strand, within MPMX20_03237at 3409.594 kb on - strand, within MPMX20_03237at 3409.674 kb on - strand, within MPMX20_03237at 3409.712 kb on + strand, within MPMX20_03237at 3409.745 kb on + strandat 3409.753 kb on - strandat 3409.753 kb on - strandat 3409.800 kb on + strandat 3409.813 kb on - strandat 3409.824 kb on + strandat 3409.827 kb on - strandat 3409.827 kb on - strandat 3409.851 kb on + strandat 3409.864 kb on - strandat 3409.930 kb on + strand, within MPMX20_03238at 3409.955 kb on - strand, within MPMX20_03238at 3409.971 kb on + strand, within MPMX20_03238at 3409.998 kb on - strand, within MPMX20_03238at 3410.031 kb on + strand, within MPMX20_03238at 3410.036 kb on - strand, within MPMX20_03238at 3410.073 kb on - strand, within MPMX20_03238at 3410.151 kb on - strand, within MPMX20_03238at 3410.152 kb on + strand, within MPMX20_03238at 3410.179 kb on - strand, within MPMX20_03238at 3410.181 kb on + strand, within MPMX20_03238at 3410.181 kb on + strand, within MPMX20_03238at 3410.189 kb on - strand, within MPMX20_03238at 3410.189 kb on - strand, within MPMX20_03238at 3410.189 kb on - strand, within MPMX20_03238at 3410.189 kb on - strand, within MPMX20_03238at 3410.221 kb on + strandat 3410.221 kb on + strandat 3410.240 kb on - strandat 3410.461 kb on - strand, within MPMX20_03239at 3410.467 kb on + strand, within MPMX20_03239at 3410.550 kb on + strand, within MPMX20_03239at 3410.550 kb on + strand, within MPMX20_03239at 3410.599 kb on - strand, within MPMX20_03239at 3410.633 kb on - strand, within MPMX20_03239at 3410.647 kb on + strand, within MPMX20_03239at 3410.689 kb on - strand, within MPMX20_03239at 3410.691 kb on + strand, within MPMX20_03239at 3410.704 kb on - strand, within MPMX20_03239at 3410.711 kb on + strand, within MPMX20_03239at 3410.711 kb on - strand, within MPMX20_03239at 3410.842 kb on - strand, within MPMX20_03239at 3410.882 kb on + strand, within MPMX20_03239at 3410.889 kb on - strand, within MPMX20_03239at 3410.920 kb on - strand, within MPMX20_03239at 3410.930 kb on - strand, within MPMX20_03239at 3410.958 kb on + strand, within MPMX20_03239at 3411.069 kb on + strandat 3411.138 kb on - strandat 3411.279 kb on + strandat 3411.279 kb on + strandat 3411.279 kb on + strandat 3411.287 kb on - strandat 3411.331 kb on + strand, within MPMX20_03240at 3411.333 kb on + strand, within MPMX20_03240at 3411.341 kb on - strand, within MPMX20_03240at 3411.443 kb on + strand, within MPMX20_03240at 3411.473 kb on - strand, within MPMX20_03240at 3411.482 kb on + strand, within MPMX20_03240at 3411.499 kb on + strand, within MPMX20_03240at 3411.535 kb on - strand, within MPMX20_03240at 3411.633 kb on + strand, within MPMX20_03240at 3411.684 kb on + strandat 3411.697 kb on - strandat 3411.818 kb on - strand, within MPMX20_03241at 3411.941 kb on - strand, within MPMX20_03241at 3411.941 kb on - strand, within MPMX20_03241at 3412.085 kb on + strand, within MPMX20_03241at 3412.107 kb on + strand, within MPMX20_03241

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Per-strain Table

Position Strand Gene LocusTag Fraction 0.1X LB plate, 1:1 coculture with Paraburkholderia pittii CO4
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3,409,253 + MPMX20_03237 0.15 +0.0
3,409,253 + MPMX20_03237 0.15 -0.0
3,409,261 - MPMX20_03237 0.16 -2.3
3,409,273 + MPMX20_03237 0.18 -0.8
3,409,281 - MPMX20_03237 0.19 -0.2
3,409,281 - MPMX20_03237 0.19 +1.6
3,409,281 - MPMX20_03237 0.19 +1.1
3,409,306 + MPMX20_03237 0.23 -0.2
3,409,390 - MPMX20_03237 0.37 +0.0
3,409,422 + MPMX20_03237 0.42 +1.4
3,409,422 + MPMX20_03237 0.42 -1.2
3,409,422 + MPMX20_03237 0.42 -0.7
3,409,430 - MPMX20_03237 0.43 +0.7
3,409,479 + MPMX20_03237 0.51 +1.0
3,409,487 - MPMX20_03237 0.52 +0.1
3,409,507 + MPMX20_03237 0.55 +0.7
3,409,584 - MPMX20_03237 0.67 +0.5
3,409,586 + MPMX20_03237 0.68 +0.8
3,409,594 - MPMX20_03237 0.69 -1.1
3,409,594 - MPMX20_03237 0.69 +1.6
3,409,674 - MPMX20_03237 0.82 +1.6
3,409,712 + MPMX20_03237 0.88 -0.1
3,409,745 + -1.5
3,409,753 - -2.8
3,409,753 - -0.6
3,409,800 + -0.7
3,409,813 - -0.1
3,409,824 + +0.3
3,409,827 - -0.5
3,409,827 - -1.9
3,409,851 + +0.1
3,409,864 - -0.3
3,409,930 + MPMX20_03238 0.18 +0.5
3,409,955 - MPMX20_03238 0.25 -1.1
3,409,971 + MPMX20_03238 0.29 -1.0
3,409,998 - MPMX20_03238 0.36 -1.9
3,410,031 + MPMX20_03238 0.45 -0.5
3,410,036 - MPMX20_03238 0.47 -2.8
3,410,073 - MPMX20_03238 0.57 +0.9
3,410,151 - MPMX20_03238 0.78 -3.1
3,410,152 + MPMX20_03238 0.78 -1.5
3,410,179 - MPMX20_03238 0.85 +0.1
3,410,181 + MPMX20_03238 0.86 -0.9
3,410,181 + MPMX20_03238 0.86 -0.7
3,410,189 - MPMX20_03238 0.88 +0.6
3,410,189 - MPMX20_03238 0.88 -0.7
3,410,189 - MPMX20_03238 0.88 -0.2
3,410,189 - MPMX20_03238 0.88 +0.0
3,410,221 + -2.4
3,410,221 + -1.7
3,410,240 - -1.5
3,410,461 - MPMX20_03239 0.24 -0.3
3,410,467 + MPMX20_03239 0.25 -1.3
3,410,550 + MPMX20_03239 0.34 -0.3
3,410,550 + MPMX20_03239 0.34 -2.7
3,410,599 - MPMX20_03239 0.39 -0.2
3,410,633 - MPMX20_03239 0.43 +0.3
3,410,647 + MPMX20_03239 0.45 +0.0
3,410,689 - MPMX20_03239 0.50 -0.5
3,410,691 + MPMX20_03239 0.50 +1.9
3,410,704 - MPMX20_03239 0.51 -1.6
3,410,711 + MPMX20_03239 0.52 +5.1
3,410,711 - MPMX20_03239 0.52 +0.9
3,410,842 - MPMX20_03239 0.67 -2.0
3,410,882 + MPMX20_03239 0.71 -0.4
3,410,889 - MPMX20_03239 0.72 +2.2
3,410,920 - MPMX20_03239 0.75 +1.0
3,410,930 - MPMX20_03239 0.77 +1.4
3,410,958 + MPMX20_03239 0.80 -0.6
3,411,069 + -1.0
3,411,138 - -1.9
3,411,279 + +0.9
3,411,279 + -0.8
3,411,279 + +0.8
3,411,287 - +1.5
3,411,331 + MPMX20_03240 0.14 -0.3
3,411,333 + MPMX20_03240 0.14 +1.2
3,411,341 - MPMX20_03240 0.16 -0.2
3,411,443 + MPMX20_03240 0.41 -0.6
3,411,473 - MPMX20_03240 0.48 +1.6
3,411,482 + MPMX20_03240 0.50 +1.0
3,411,499 + MPMX20_03240 0.54 +2.2
3,411,535 - MPMX20_03240 0.63 -1.7
3,411,633 + MPMX20_03240 0.86 +1.1
3,411,684 + -0.8
3,411,697 - +0.6
3,411,818 - MPMX20_03241 0.10 -1.2
3,411,941 - MPMX20_03241 0.26 -1.1
3,411,941 - MPMX20_03241 0.26 +2.5
3,412,085 + MPMX20_03241 0.45 -0.4
3,412,107 + MPMX20_03241 0.48 +0.0

Or see this region's nucleotide sequence