Experiment: 0.1X LB plate, 1:1 coculture with Paraburkholderia pittii CO4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03237 and MPMX20_03238 are separated by 74 nucleotides MPMX20_03238 and MPMX20_03239 are separated by 13 nucleotides MPMX20_03239 and MPMX20_03240 are separated by 134 nucleotides MPMX20_03240 and MPMX20_03241 are separated by 47 nucleotides
MPMX20_03237: MPMX20_03237 - Disulfide-bond oxidoreductase YfcG, at 3,409,160 to 3,409,789
_03237
MPMX20_03238: MPMX20_03238 - Dihydroneopterin triphosphate 2'-epimerase, at 3,409,864 to 3,410,232
_03238
MPMX20_03239: MPMX20_03239 - Epimerase family protein, at 3,410,246 to 3,411,139
_03239
MPMX20_03240: MPMX20_03240 - hypothetical protein, at 3,411,274 to 3,411,690
_03240
MPMX20_03241: MPMX20_03241 - Histidine transport ATP-binding protein HisP, at 3,411,738 to 3,412,511
_03241
Position (kb)
3410
3411
3412 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5 at 3409.253 kb on + strand, within MPMX20_03237 at 3409.253 kb on + strand, within MPMX20_03237 at 3409.261 kb on - strand, within MPMX20_03237 at 3409.273 kb on + strand, within MPMX20_03237 at 3409.281 kb on - strand, within MPMX20_03237 at 3409.281 kb on - strand, within MPMX20_03237 at 3409.281 kb on - strand, within MPMX20_03237 at 3409.306 kb on + strand, within MPMX20_03237 at 3409.390 kb on - strand, within MPMX20_03237 at 3409.422 kb on + strand, within MPMX20_03237 at 3409.422 kb on + strand, within MPMX20_03237 at 3409.422 kb on + strand, within MPMX20_03237 at 3409.430 kb on - strand, within MPMX20_03237 at 3409.479 kb on + strand, within MPMX20_03237 at 3409.487 kb on - strand, within MPMX20_03237 at 3409.507 kb on + strand, within MPMX20_03237 at 3409.584 kb on - strand, within MPMX20_03237 at 3409.586 kb on + strand, within MPMX20_03237 at 3409.594 kb on - strand, within MPMX20_03237 at 3409.594 kb on - strand, within MPMX20_03237 at 3409.674 kb on - strand, within MPMX20_03237 at 3409.712 kb on + strand, within MPMX20_03237 at 3409.745 kb on + strand at 3409.753 kb on - strand at 3409.753 kb on - strand at 3409.800 kb on + strand at 3409.813 kb on - strand at 3409.824 kb on + strand at 3409.827 kb on - strand at 3409.827 kb on - strand at 3409.851 kb on + strand at 3409.864 kb on - strand at 3409.930 kb on + strand, within MPMX20_03238 at 3409.955 kb on - strand, within MPMX20_03238 at 3409.971 kb on + strand, within MPMX20_03238 at 3409.998 kb on - strand, within MPMX20_03238 at 3410.031 kb on + strand, within MPMX20_03238 at 3410.036 kb on - strand, within MPMX20_03238 at 3410.073 kb on - strand, within MPMX20_03238 at 3410.151 kb on - strand, within MPMX20_03238 at 3410.152 kb on + strand, within MPMX20_03238 at 3410.179 kb on - strand, within MPMX20_03238 at 3410.181 kb on + strand, within MPMX20_03238 at 3410.181 kb on + strand, within MPMX20_03238 at 3410.189 kb on - strand, within MPMX20_03238 at 3410.189 kb on - strand, within MPMX20_03238 at 3410.189 kb on - strand, within MPMX20_03238 at 3410.189 kb on - strand, within MPMX20_03238 at 3410.221 kb on + strand at 3410.221 kb on + strand at 3410.240 kb on - strand at 3410.461 kb on - strand, within MPMX20_03239 at 3410.467 kb on + strand, within MPMX20_03239 at 3410.550 kb on + strand, within MPMX20_03239 at 3410.550 kb on + strand, within MPMX20_03239 at 3410.599 kb on - strand, within MPMX20_03239 at 3410.633 kb on - strand, within MPMX20_03239 at 3410.647 kb on + strand, within MPMX20_03239 at 3410.689 kb on - strand, within MPMX20_03239 at 3410.691 kb on + strand, within MPMX20_03239 at 3410.704 kb on - strand, within MPMX20_03239 at 3410.711 kb on + strand, within MPMX20_03239 at 3410.711 kb on - strand, within MPMX20_03239 at 3410.842 kb on - strand, within MPMX20_03239 at 3410.882 kb on + strand, within MPMX20_03239 at 3410.889 kb on - strand, within MPMX20_03239 at 3410.920 kb on - strand, within MPMX20_03239 at 3410.930 kb on - strand, within MPMX20_03239 at 3410.958 kb on + strand, within MPMX20_03239 at 3411.069 kb on + strand at 3411.138 kb on - strand at 3411.279 kb on + strand at 3411.279 kb on + strand at 3411.279 kb on + strand at 3411.287 kb on - strand at 3411.331 kb on + strand, within MPMX20_03240 at 3411.333 kb on + strand, within MPMX20_03240 at 3411.341 kb on - strand, within MPMX20_03240 at 3411.443 kb on + strand, within MPMX20_03240 at 3411.473 kb on - strand, within MPMX20_03240 at 3411.482 kb on + strand, within MPMX20_03240 at 3411.499 kb on + strand, within MPMX20_03240 at 3411.535 kb on - strand, within MPMX20_03240 at 3411.633 kb on + strand, within MPMX20_03240 at 3411.684 kb on + strand at 3411.697 kb on - strand at 3411.818 kb on - strand, within MPMX20_03241 at 3411.941 kb on - strand, within MPMX20_03241 at 3411.941 kb on - strand, within MPMX20_03241 at 3412.085 kb on + strand, within MPMX20_03241 at 3412.107 kb on + strand, within MPMX20_03241
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, 1:1 coculture with Paraburkholderia pittii CO4 remove 3,409,253 + MPMX20_03237 0.15 +0.0 3,409,253 + MPMX20_03237 0.15 -0.0 3,409,261 - MPMX20_03237 0.16 -2.3 3,409,273 + MPMX20_03237 0.18 -0.8 3,409,281 - MPMX20_03237 0.19 -0.2 3,409,281 - MPMX20_03237 0.19 +1.6 3,409,281 - MPMX20_03237 0.19 +1.1 3,409,306 + MPMX20_03237 0.23 -0.2 3,409,390 - MPMX20_03237 0.37 +0.0 3,409,422 + MPMX20_03237 0.42 +1.4 3,409,422 + MPMX20_03237 0.42 -1.2 3,409,422 + MPMX20_03237 0.42 -0.7 3,409,430 - MPMX20_03237 0.43 +0.7 3,409,479 + MPMX20_03237 0.51 +1.0 3,409,487 - MPMX20_03237 0.52 +0.1 3,409,507 + MPMX20_03237 0.55 +0.7 3,409,584 - MPMX20_03237 0.67 +0.5 3,409,586 + MPMX20_03237 0.68 +0.8 3,409,594 - MPMX20_03237 0.69 -1.1 3,409,594 - MPMX20_03237 0.69 +1.6 3,409,674 - MPMX20_03237 0.82 +1.6 3,409,712 + MPMX20_03237 0.88 -0.1 3,409,745 + -1.5 3,409,753 - -2.8 3,409,753 - -0.6 3,409,800 + -0.7 3,409,813 - -0.1 3,409,824 + +0.3 3,409,827 - -0.5 3,409,827 - -1.9 3,409,851 + +0.1 3,409,864 - -0.3 3,409,930 + MPMX20_03238 0.18 +0.5 3,409,955 - MPMX20_03238 0.25 -1.1 3,409,971 + MPMX20_03238 0.29 -1.0 3,409,998 - MPMX20_03238 0.36 -1.9 3,410,031 + MPMX20_03238 0.45 -0.5 3,410,036 - MPMX20_03238 0.47 -2.8 3,410,073 - MPMX20_03238 0.57 +0.9 3,410,151 - MPMX20_03238 0.78 -3.1 3,410,152 + MPMX20_03238 0.78 -1.5 3,410,179 - MPMX20_03238 0.85 +0.1 3,410,181 + MPMX20_03238 0.86 -0.9 3,410,181 + MPMX20_03238 0.86 -0.7 3,410,189 - MPMX20_03238 0.88 +0.6 3,410,189 - MPMX20_03238 0.88 -0.7 3,410,189 - MPMX20_03238 0.88 -0.2 3,410,189 - MPMX20_03238 0.88 +0.0 3,410,221 + -2.4 3,410,221 + -1.7 3,410,240 - -1.5 3,410,461 - MPMX20_03239 0.24 -0.3 3,410,467 + MPMX20_03239 0.25 -1.3 3,410,550 + MPMX20_03239 0.34 -0.3 3,410,550 + MPMX20_03239 0.34 -2.7 3,410,599 - MPMX20_03239 0.39 -0.2 3,410,633 - MPMX20_03239 0.43 +0.3 3,410,647 + MPMX20_03239 0.45 +0.0 3,410,689 - MPMX20_03239 0.50 -0.5 3,410,691 + MPMX20_03239 0.50 +1.9 3,410,704 - MPMX20_03239 0.51 -1.6 3,410,711 + MPMX20_03239 0.52 +5.1 3,410,711 - MPMX20_03239 0.52 +0.9 3,410,842 - MPMX20_03239 0.67 -2.0 3,410,882 + MPMX20_03239 0.71 -0.4 3,410,889 - MPMX20_03239 0.72 +2.2 3,410,920 - MPMX20_03239 0.75 +1.0 3,410,930 - MPMX20_03239 0.77 +1.4 3,410,958 + MPMX20_03239 0.80 -0.6 3,411,069 + -1.0 3,411,138 - -1.9 3,411,279 + +0.9 3,411,279 + -0.8 3,411,279 + +0.8 3,411,287 - +1.5 3,411,331 + MPMX20_03240 0.14 -0.3 3,411,333 + MPMX20_03240 0.14 +1.2 3,411,341 - MPMX20_03240 0.16 -0.2 3,411,443 + MPMX20_03240 0.41 -0.6 3,411,473 - MPMX20_03240 0.48 +1.6 3,411,482 + MPMX20_03240 0.50 +1.0 3,411,499 + MPMX20_03240 0.54 +2.2 3,411,535 - MPMX20_03240 0.63 -1.7 3,411,633 + MPMX20_03240 0.86 +1.1 3,411,684 + -0.8 3,411,697 - +0.6 3,411,818 - MPMX20_03241 0.10 -1.2 3,411,941 - MPMX20_03241 0.26 -1.1 3,411,941 - MPMX20_03241 0.26 +2.5 3,412,085 + MPMX20_03241 0.45 -0.4 3,412,107 + MPMX20_03241 0.48 +0.0
Or see this region's nucleotide sequence