Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_02896

Experiment: 0.1X LB plate, 1:1 coculture with Paraburkholderia pittii CO4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_02893 and MPMX20_02894 are separated by 146 nucleotidesMPMX20_02894 and MPMX20_02895 are separated by 234 nucleotidesMPMX20_02895 and MPMX20_02896 overlap by 4 nucleotidesMPMX20_02896 and MPMX20_02897 are separated by 3 nucleotidesMPMX20_02897 and MPMX20_02898 overlap by 4 nucleotides MPMX20_02893: MPMX20_02893 - hypothetical protein, at 3,042,880 to 3,043,083 _02893 MPMX20_02894: MPMX20_02894 - hypothetical protein, at 3,043,230 to 3,043,439 _02894 MPMX20_02895: MPMX20_02895 - hypothetical protein, at 3,043,674 to 3,044,060 _02895 MPMX20_02896: MPMX20_02896 - Lysozyme RrrD, at 3,044,057 to 3,044,497 _02896 MPMX20_02897: MPMX20_02897 - hypothetical protein, at 3,044,501 to 3,044,776 _02897 MPMX20_02898: MPMX20_02898 - hypothetical protein, at 3,044,773 to 3,045,174 _02898 Position (kb) 3044 3045Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 3043.126 kb on - strandat 3043.126 kb on - strandat 3043.134 kb on - strandat 3043.134 kb on - strandat 3043.134 kb on - strandat 3043.145 kb on - strandat 3043.151 kb on + strandat 3043.159 kb on + strandat 3043.180 kb on + strandat 3043.180 kb on + strandat 3043.188 kb on - strandat 3043.190 kb on - strandat 3043.206 kb on + strandat 3043.206 kb on + strandat 3043.206 kb on + strandat 3043.229 kb on - strandat 3043.348 kb on - strand, within MPMX20_02894at 3043.364 kb on + strand, within MPMX20_02894at 3043.382 kb on + strand, within MPMX20_02894at 3043.394 kb on + strand, within MPMX20_02894at 3043.412 kb on - strand, within MPMX20_02894at 3043.432 kb on - strandat 3043.441 kb on + strandat 3043.461 kb on + strandat 3043.461 kb on + strandat 3043.469 kb on - strandat 3043.504 kb on - strandat 3043.509 kb on - strandat 3043.531 kb on + strandat 3043.569 kb on + strandat 3043.579 kb on + strandat 3043.579 kb on + strandat 3043.587 kb on + strandat 3043.587 kb on - strandat 3043.590 kb on + strandat 3043.590 kb on + strandat 3043.590 kb on + strandat 3043.590 kb on + strandat 3043.590 kb on + strandat 3043.590 kb on + strandat 3043.590 kb on + strandat 3043.590 kb on + strandat 3043.590 kb on + strandat 3043.590 kb on + strandat 3043.590 kb on + strandat 3043.595 kb on - strandat 3043.598 kb on - strandat 3043.598 kb on - strandat 3043.598 kb on - strandat 3043.598 kb on - strandat 3043.598 kb on - strandat 3043.598 kb on - strandat 3043.598 kb on - strandat 3043.598 kb on - strandat 3043.598 kb on - strandat 3043.598 kb on - strandat 3043.598 kb on - strandat 3043.598 kb on - strandat 3043.672 kb on + strandat 3043.672 kb on + strandat 3043.673 kb on - strandat 3043.724 kb on + strand, within MPMX20_02895at 3043.794 kb on + strand, within MPMX20_02895at 3043.836 kb on - strand, within MPMX20_02895at 3043.907 kb on + strand, within MPMX20_02895at 3043.907 kb on + strand, within MPMX20_02895at 3043.915 kb on - strand, within MPMX20_02895at 3043.921 kb on + strand, within MPMX20_02895at 3043.921 kb on + strand, within MPMX20_02895at 3043.929 kb on - strand, within MPMX20_02895at 3043.929 kb on - strand, within MPMX20_02895at 3043.934 kb on - strand, within MPMX20_02895at 3043.949 kb on - strand, within MPMX20_02895at 3043.972 kb on + strand, within MPMX20_02895at 3044.046 kb on - strandat 3044.063 kb on - strandat 3044.071 kb on - strandat 3044.113 kb on - strand, within MPMX20_02896at 3044.118 kb on - strand, within MPMX20_02896at 3044.133 kb on - strand, within MPMX20_02896at 3044.256 kb on + strand, within MPMX20_02896at 3044.262 kb on - strand, within MPMX20_02896at 3044.266 kb on + strand, within MPMX20_02896at 3044.296 kb on + strand, within MPMX20_02896at 3044.311 kb on - strand, within MPMX20_02896at 3044.329 kb on + strand, within MPMX20_02896at 3044.349 kb on + strand, within MPMX20_02896at 3044.364 kb on - strand, within MPMX20_02896at 3044.372 kb on - strand, within MPMX20_02896at 3044.396 kb on + strand, within MPMX20_02896at 3044.416 kb on + strand, within MPMX20_02896at 3044.416 kb on + strand, within MPMX20_02896at 3044.416 kb on + strand, within MPMX20_02896at 3044.416 kb on + strand, within MPMX20_02896at 3044.416 kb on + strand, within MPMX20_02896at 3044.416 kb on + strand, within MPMX20_02896at 3044.424 kb on - strand, within MPMX20_02896at 3044.424 kb on - strand, within MPMX20_02896at 3044.424 kb on - strand, within MPMX20_02896at 3044.424 kb on - strand, within MPMX20_02896at 3044.424 kb on - strand, within MPMX20_02896at 3044.424 kb on - strand, within MPMX20_02896at 3044.424 kb on - strand, within MPMX20_02896at 3044.426 kb on + strand, within MPMX20_02896at 3044.426 kb on + strand, within MPMX20_02896at 3044.426 kb on + strand, within MPMX20_02896at 3044.426 kb on + strand, within MPMX20_02896at 3044.426 kb on - strand, within MPMX20_02896at 3044.434 kb on - strand, within MPMX20_02896at 3044.434 kb on - strand, within MPMX20_02896at 3044.434 kb on - strand, within MPMX20_02896at 3044.434 kb on - strand, within MPMX20_02896at 3044.451 kb on + strand, within MPMX20_02896at 3044.503 kb on + strandat 3044.506 kb on - strandat 3044.536 kb on - strand, within MPMX20_02897at 3044.594 kb on - strand, within MPMX20_02897at 3044.594 kb on - strand, within MPMX20_02897at 3044.657 kb on + strand, within MPMX20_02897at 3044.657 kb on + strand, within MPMX20_02897at 3044.660 kb on - strand, within MPMX20_02897at 3044.665 kb on - strand, within MPMX20_02897at 3044.665 kb on - strand, within MPMX20_02897at 3044.665 kb on - strand, within MPMX20_02897at 3044.670 kb on + strand, within MPMX20_02897at 3044.784 kb on - strandat 3044.801 kb on - strandat 3044.801 kb on - strandat 3044.887 kb on - strand, within MPMX20_02898at 3044.889 kb on + strand, within MPMX20_02898at 3044.897 kb on - strand, within MPMX20_02898at 3044.897 kb on - strand, within MPMX20_02898at 3044.897 kb on - strand, within MPMX20_02898at 3044.966 kb on + strand, within MPMX20_02898at 3044.966 kb on + strand, within MPMX20_02898at 3044.968 kb on + strand, within MPMX20_02898at 3044.974 kb on - strand, within MPMX20_02898at 3045.002 kb on + strand, within MPMX20_02898at 3045.010 kb on - strand, within MPMX20_02898at 3045.013 kb on + strand, within MPMX20_02898at 3045.038 kb on - strand, within MPMX20_02898at 3045.038 kb on - strand, within MPMX20_02898at 3045.045 kb on - strand, within MPMX20_02898at 3045.046 kb on + strand, within MPMX20_02898at 3045.046 kb on + strand, within MPMX20_02898at 3045.054 kb on - strand, within MPMX20_02898at 3045.054 kb on - strand, within MPMX20_02898at 3045.054 kb on - strand, within MPMX20_02898at 3045.054 kb on - strand, within MPMX20_02898at 3045.078 kb on - strand, within MPMX20_02898at 3045.114 kb on + strand, within MPMX20_02898at 3045.115 kb on + strand, within MPMX20_02898at 3045.122 kb on - strand, within MPMX20_02898at 3045.122 kb on - strand, within MPMX20_02898at 3045.156 kb on - strandat 3045.156 kb on - strandat 3045.195 kb on + strandat 3045.195 kb on + strandat 3045.203 kb on - strandat 3045.283 kb on + strandat 3045.355 kb on - strandat 3045.406 kb on + strandat 3045.412 kb on + strandat 3045.491 kb on + strandat 3045.491 kb on + strandat 3045.491 kb on + strandat 3045.491 kb on + strandat 3045.491 kb on + strandat 3045.491 kb on + strandat 3045.491 kb on + strandat 3045.491 kb on + strandat 3045.491 kb on + strandat 3045.491 kb on + strandat 3045.491 kb on + strandat 3045.491 kb on + strandat 3045.491 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 0.1X LB plate, 1:1 coculture with Paraburkholderia pittii CO4
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3,043,126 - -1.1
3,043,126 - -1.1
3,043,134 - -2.0
3,043,134 - -2.2
3,043,134 - -1.2
3,043,145 - -0.4
3,043,151 + -0.6
3,043,159 + -2.1
3,043,180 + -2.1
3,043,180 + +0.6
3,043,188 - -2.0
3,043,190 - -0.8
3,043,206 + -1.7
3,043,206 + +0.5
3,043,206 + +1.9
3,043,229 - -2.8
3,043,348 - MPMX20_02894 0.56 -1.5
3,043,364 + MPMX20_02894 0.64 -2.0
3,043,382 + MPMX20_02894 0.72 -1.8
3,043,394 + MPMX20_02894 0.78 -2.8
3,043,412 - MPMX20_02894 0.87 -3.4
3,043,432 - -1.7
3,043,441 + -1.2
3,043,461 + -0.1
3,043,461 + -2.7
3,043,469 - -1.7
3,043,504 - -1.6
3,043,509 - -0.7
3,043,531 + -2.4
3,043,569 + -3.3
3,043,579 + -3.4
3,043,579 + -3.4
3,043,587 + -2.2
3,043,587 - -2.3
3,043,590 + -3.8
3,043,590 + -3.3
3,043,590 + -2.6
3,043,590 + -3.3
3,043,590 + -2.8
3,043,590 + -2.3
3,043,590 + -1.0
3,043,590 + -2.3
3,043,590 + -0.8
3,043,590 + -0.9
3,043,590 + -1.5
3,043,595 - -0.7
3,043,598 - -2.9
3,043,598 - -1.4
3,043,598 - -3.0
3,043,598 - -2.8
3,043,598 - -2.0
3,043,598 - -0.2
3,043,598 - -0.8
3,043,598 - -0.7
3,043,598 - -5.1
3,043,598 - -1.2
3,043,598 - -3.0
3,043,598 - -1.8
3,043,672 + -3.5
3,043,672 + -1.7
3,043,673 - -3.1
3,043,724 + MPMX20_02895 0.13 -1.3
3,043,794 + MPMX20_02895 0.31 -0.5
3,043,836 - MPMX20_02895 0.42 -1.5
3,043,907 + MPMX20_02895 0.60 -0.8
3,043,907 + MPMX20_02895 0.60 +0.8
3,043,915 - MPMX20_02895 0.62 -2.3
3,043,921 + MPMX20_02895 0.64 -1.4
3,043,921 + MPMX20_02895 0.64 -1.8
3,043,929 - MPMX20_02895 0.66 +0.3
3,043,929 - MPMX20_02895 0.66 -2.2
3,043,934 - MPMX20_02895 0.67 -2.4
3,043,949 - MPMX20_02895 0.71 -0.6
3,043,972 + MPMX20_02895 0.77 -1.2
3,044,046 - -2.8
3,044,063 - -2.7
3,044,071 - +0.4
3,044,113 - MPMX20_02896 0.13 -2.6
3,044,118 - MPMX20_02896 0.14 -3.9
3,044,133 - MPMX20_02896 0.17 -1.9
3,044,256 + MPMX20_02896 0.45 -0.8
3,044,262 - MPMX20_02896 0.46 -2.3
3,044,266 + MPMX20_02896 0.47 -2.0
3,044,296 + MPMX20_02896 0.54 +0.4
3,044,311 - MPMX20_02896 0.58 -3.8
3,044,329 + MPMX20_02896 0.62 -2.3
3,044,349 + MPMX20_02896 0.66 -1.4
3,044,364 - MPMX20_02896 0.70 -2.7
3,044,372 - MPMX20_02896 0.71 -2.0
3,044,396 + MPMX20_02896 0.77 -3.7
3,044,416 + MPMX20_02896 0.81 -2.6
3,044,416 + MPMX20_02896 0.81 -2.7
3,044,416 + MPMX20_02896 0.81 -2.5
3,044,416 + MPMX20_02896 0.81 -1.9
3,044,416 + MPMX20_02896 0.81 -1.0
3,044,416 + MPMX20_02896 0.81 -3.4
3,044,424 - MPMX20_02896 0.83 -2.4
3,044,424 - MPMX20_02896 0.83 -0.2
3,044,424 - MPMX20_02896 0.83 -2.5
3,044,424 - MPMX20_02896 0.83 -2.4
3,044,424 - MPMX20_02896 0.83 -2.3
3,044,424 - MPMX20_02896 0.83 -2.1
3,044,424 - MPMX20_02896 0.83 -2.3
3,044,426 + MPMX20_02896 0.84 +0.2
3,044,426 + MPMX20_02896 0.84 -3.6
3,044,426 + MPMX20_02896 0.84 +1.3
3,044,426 + MPMX20_02896 0.84 -3.0
3,044,426 - MPMX20_02896 0.84 -1.5
3,044,434 - MPMX20_02896 0.85 -3.2
3,044,434 - MPMX20_02896 0.85 -3.0
3,044,434 - MPMX20_02896 0.85 -0.7
3,044,434 - MPMX20_02896 0.85 -2.8
3,044,451 + MPMX20_02896 0.89 -1.5
3,044,503 + -1.1
3,044,506 - -2.3
3,044,536 - MPMX20_02897 0.13 -0.9
3,044,594 - MPMX20_02897 0.34 -1.5
3,044,594 - MPMX20_02897 0.34 -0.8
3,044,657 + MPMX20_02897 0.57 -0.0
3,044,657 + MPMX20_02897 0.57 -2.6
3,044,660 - MPMX20_02897 0.58 -1.6
3,044,665 - MPMX20_02897 0.59 -1.9
3,044,665 - MPMX20_02897 0.59 +1.8
3,044,665 - MPMX20_02897 0.59 -0.5
3,044,670 + MPMX20_02897 0.61 +0.9
3,044,784 - -0.5
3,044,801 - -1.2
3,044,801 - +0.7
3,044,887 - MPMX20_02898 0.28 -2.4
3,044,889 + MPMX20_02898 0.29 -1.1
3,044,897 - MPMX20_02898 0.31 -2.3
3,044,897 - MPMX20_02898 0.31 +0.3
3,044,897 - MPMX20_02898 0.31 +0.5
3,044,966 + MPMX20_02898 0.48 -1.8
3,044,966 + MPMX20_02898 0.48 -0.9
3,044,968 + MPMX20_02898 0.49 -2.2
3,044,974 - MPMX20_02898 0.50 -1.3
3,045,002 + MPMX20_02898 0.57 -1.2
3,045,010 - MPMX20_02898 0.59 +2.6
3,045,013 + MPMX20_02898 0.60 -0.5
3,045,038 - MPMX20_02898 0.66 -1.3
3,045,038 - MPMX20_02898 0.66 -1.3
3,045,045 - MPMX20_02898 0.68 -0.8
3,045,046 + MPMX20_02898 0.68 -1.6
3,045,046 + MPMX20_02898 0.68 -0.2
3,045,054 - MPMX20_02898 0.70 -0.4
3,045,054 - MPMX20_02898 0.70 -1.5
3,045,054 - MPMX20_02898 0.70 -0.2
3,045,054 - MPMX20_02898 0.70 -1.9
3,045,078 - MPMX20_02898 0.76 -0.5
3,045,114 + MPMX20_02898 0.85 -0.6
3,045,115 + MPMX20_02898 0.85 -1.7
3,045,122 - MPMX20_02898 0.87 -0.9
3,045,122 - MPMX20_02898 0.87 -0.6
3,045,156 - -1.3
3,045,156 - -1.5
3,045,195 + +0.1
3,045,195 + -2.0
3,045,203 - -3.1
3,045,283 + -0.9
3,045,355 - -0.3
3,045,406 + -1.5
3,045,412 + -0.9
3,045,491 + -0.6
3,045,491 + +0.4
3,045,491 + -0.4
3,045,491 + -2.1
3,045,491 + -1.8
3,045,491 + -2.4
3,045,491 + +0.4
3,045,491 + -2.3
3,045,491 + -0.3
3,045,491 + -3.1
3,045,491 + -1.1
3,045,491 + -2.6
3,045,491 + -0.3

Or see this region's nucleotide sequence