Experiment: 0.1X LB plate, 1:1 coculture with Paraburkholderia pittii CO4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02893 and MPMX20_02894 are separated by 146 nucleotides MPMX20_02894 and MPMX20_02895 are separated by 234 nucleotides MPMX20_02895 and MPMX20_02896 overlap by 4 nucleotides MPMX20_02896 and MPMX20_02897 are separated by 3 nucleotides MPMX20_02897 and MPMX20_02898 overlap by 4 nucleotides
MPMX20_02893: MPMX20_02893 - hypothetical protein, at 3,042,880 to 3,043,083
_02893
MPMX20_02894: MPMX20_02894 - hypothetical protein, at 3,043,230 to 3,043,439
_02894
MPMX20_02895: MPMX20_02895 - hypothetical protein, at 3,043,674 to 3,044,060
_02895
MPMX20_02896: MPMX20_02896 - Lysozyme RrrD, at 3,044,057 to 3,044,497
_02896
MPMX20_02897: MPMX20_02897 - hypothetical protein, at 3,044,501 to 3,044,776
_02897
MPMX20_02898: MPMX20_02898 - hypothetical protein, at 3,044,773 to 3,045,174
_02898
Position (kb)
3044
3045 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 3043.126 kb on - strand at 3043.126 kb on - strand at 3043.134 kb on - strand at 3043.134 kb on - strand at 3043.134 kb on - strand at 3043.145 kb on - strand at 3043.151 kb on + strand at 3043.159 kb on + strand at 3043.180 kb on + strand at 3043.180 kb on + strand at 3043.188 kb on - strand at 3043.190 kb on - strand at 3043.206 kb on + strand at 3043.206 kb on + strand at 3043.206 kb on + strand at 3043.229 kb on - strand at 3043.348 kb on - strand, within MPMX20_02894 at 3043.364 kb on + strand, within MPMX20_02894 at 3043.382 kb on + strand, within MPMX20_02894 at 3043.394 kb on + strand, within MPMX20_02894 at 3043.412 kb on - strand, within MPMX20_02894 at 3043.432 kb on - strand at 3043.441 kb on + strand at 3043.461 kb on + strand at 3043.461 kb on + strand at 3043.469 kb on - strand at 3043.504 kb on - strand at 3043.509 kb on - strand at 3043.531 kb on + strand at 3043.569 kb on + strand at 3043.579 kb on + strand at 3043.579 kb on + strand at 3043.587 kb on + strand at 3043.587 kb on - strand at 3043.590 kb on + strand at 3043.590 kb on + strand at 3043.590 kb on + strand at 3043.590 kb on + strand at 3043.590 kb on + strand at 3043.590 kb on + strand at 3043.590 kb on + strand at 3043.590 kb on + strand at 3043.590 kb on + strand at 3043.590 kb on + strand at 3043.590 kb on + strand at 3043.595 kb on - strand at 3043.598 kb on - strand at 3043.598 kb on - strand at 3043.598 kb on - strand at 3043.598 kb on - strand at 3043.598 kb on - strand at 3043.598 kb on - strand at 3043.598 kb on - strand at 3043.598 kb on - strand at 3043.598 kb on - strand at 3043.598 kb on - strand at 3043.598 kb on - strand at 3043.598 kb on - strand at 3043.672 kb on + strand at 3043.672 kb on + strand at 3043.673 kb on - strand at 3043.724 kb on + strand, within MPMX20_02895 at 3043.794 kb on + strand, within MPMX20_02895 at 3043.836 kb on - strand, within MPMX20_02895 at 3043.907 kb on + strand, within MPMX20_02895 at 3043.907 kb on + strand, within MPMX20_02895 at 3043.915 kb on - strand, within MPMX20_02895 at 3043.921 kb on + strand, within MPMX20_02895 at 3043.921 kb on + strand, within MPMX20_02895 at 3043.929 kb on - strand, within MPMX20_02895 at 3043.929 kb on - strand, within MPMX20_02895 at 3043.934 kb on - strand, within MPMX20_02895 at 3043.949 kb on - strand, within MPMX20_02895 at 3043.972 kb on + strand, within MPMX20_02895 at 3044.046 kb on - strand at 3044.063 kb on - strand at 3044.071 kb on - strand at 3044.113 kb on - strand, within MPMX20_02896 at 3044.118 kb on - strand, within MPMX20_02896 at 3044.133 kb on - strand, within MPMX20_02896 at 3044.256 kb on + strand, within MPMX20_02896 at 3044.262 kb on - strand, within MPMX20_02896 at 3044.266 kb on + strand, within MPMX20_02896 at 3044.296 kb on + strand, within MPMX20_02896 at 3044.311 kb on - strand, within MPMX20_02896 at 3044.329 kb on + strand, within MPMX20_02896 at 3044.349 kb on + strand, within MPMX20_02896 at 3044.364 kb on - strand, within MPMX20_02896 at 3044.372 kb on - strand, within MPMX20_02896 at 3044.396 kb on + strand, within MPMX20_02896 at 3044.416 kb on + strand, within MPMX20_02896 at 3044.416 kb on + strand, within MPMX20_02896 at 3044.416 kb on + strand, within MPMX20_02896 at 3044.416 kb on + strand, within MPMX20_02896 at 3044.416 kb on + strand, within MPMX20_02896 at 3044.416 kb on + strand, within MPMX20_02896 at 3044.424 kb on - strand, within MPMX20_02896 at 3044.424 kb on - strand, within MPMX20_02896 at 3044.424 kb on - strand, within MPMX20_02896 at 3044.424 kb on - strand, within MPMX20_02896 at 3044.424 kb on - strand, within MPMX20_02896 at 3044.424 kb on - strand, within MPMX20_02896 at 3044.424 kb on - strand, within MPMX20_02896 at 3044.426 kb on + strand, within MPMX20_02896 at 3044.426 kb on + strand, within MPMX20_02896 at 3044.426 kb on + strand, within MPMX20_02896 at 3044.426 kb on + strand, within MPMX20_02896 at 3044.426 kb on - strand, within MPMX20_02896 at 3044.434 kb on - strand, within MPMX20_02896 at 3044.434 kb on - strand, within MPMX20_02896 at 3044.434 kb on - strand, within MPMX20_02896 at 3044.434 kb on - strand, within MPMX20_02896 at 3044.451 kb on + strand, within MPMX20_02896 at 3044.503 kb on + strand at 3044.506 kb on - strand at 3044.536 kb on - strand, within MPMX20_02897 at 3044.594 kb on - strand, within MPMX20_02897 at 3044.594 kb on - strand, within MPMX20_02897 at 3044.657 kb on + strand, within MPMX20_02897 at 3044.657 kb on + strand, within MPMX20_02897 at 3044.660 kb on - strand, within MPMX20_02897 at 3044.665 kb on - strand, within MPMX20_02897 at 3044.665 kb on - strand, within MPMX20_02897 at 3044.665 kb on - strand, within MPMX20_02897 at 3044.670 kb on + strand, within MPMX20_02897 at 3044.784 kb on - strand at 3044.801 kb on - strand at 3044.801 kb on - strand at 3044.887 kb on - strand, within MPMX20_02898 at 3044.889 kb on + strand, within MPMX20_02898 at 3044.897 kb on - strand, within MPMX20_02898 at 3044.897 kb on - strand, within MPMX20_02898 at 3044.897 kb on - strand, within MPMX20_02898 at 3044.966 kb on + strand, within MPMX20_02898 at 3044.966 kb on + strand, within MPMX20_02898 at 3044.968 kb on + strand, within MPMX20_02898 at 3044.974 kb on - strand, within MPMX20_02898 at 3045.002 kb on + strand, within MPMX20_02898 at 3045.010 kb on - strand, within MPMX20_02898 at 3045.013 kb on + strand, within MPMX20_02898 at 3045.038 kb on - strand, within MPMX20_02898 at 3045.038 kb on - strand, within MPMX20_02898 at 3045.045 kb on - strand, within MPMX20_02898 at 3045.046 kb on + strand, within MPMX20_02898 at 3045.046 kb on + strand, within MPMX20_02898 at 3045.054 kb on - strand, within MPMX20_02898 at 3045.054 kb on - strand, within MPMX20_02898 at 3045.054 kb on - strand, within MPMX20_02898 at 3045.054 kb on - strand, within MPMX20_02898 at 3045.078 kb on - strand, within MPMX20_02898 at 3045.114 kb on + strand, within MPMX20_02898 at 3045.115 kb on + strand, within MPMX20_02898 at 3045.122 kb on - strand, within MPMX20_02898 at 3045.122 kb on - strand, within MPMX20_02898 at 3045.156 kb on - strand at 3045.156 kb on - strand at 3045.195 kb on + strand at 3045.195 kb on + strand at 3045.203 kb on - strand at 3045.283 kb on + strand at 3045.355 kb on - strand at 3045.406 kb on + strand at 3045.412 kb on + strand at 3045.491 kb on + strand at 3045.491 kb on + strand at 3045.491 kb on + strand at 3045.491 kb on + strand at 3045.491 kb on + strand at 3045.491 kb on + strand at 3045.491 kb on + strand at 3045.491 kb on + strand at 3045.491 kb on + strand at 3045.491 kb on + strand at 3045.491 kb on + strand at 3045.491 kb on + strand at 3045.491 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, 1:1 coculture with Paraburkholderia pittii CO4 remove 3,043,126 - -1.1 3,043,126 - -1.1 3,043,134 - -2.0 3,043,134 - -2.2 3,043,134 - -1.2 3,043,145 - -0.4 3,043,151 + -0.6 3,043,159 + -2.1 3,043,180 + -2.1 3,043,180 + +0.6 3,043,188 - -2.0 3,043,190 - -0.8 3,043,206 + -1.7 3,043,206 + +0.5 3,043,206 + +1.9 3,043,229 - -2.8 3,043,348 - MPMX20_02894 0.56 -1.5 3,043,364 + MPMX20_02894 0.64 -2.0 3,043,382 + MPMX20_02894 0.72 -1.8 3,043,394 + MPMX20_02894 0.78 -2.8 3,043,412 - MPMX20_02894 0.87 -3.4 3,043,432 - -1.7 3,043,441 + -1.2 3,043,461 + -0.1 3,043,461 + -2.7 3,043,469 - -1.7 3,043,504 - -1.6 3,043,509 - -0.7 3,043,531 + -2.4 3,043,569 + -3.3 3,043,579 + -3.4 3,043,579 + -3.4 3,043,587 + -2.2 3,043,587 - -2.3 3,043,590 + -3.8 3,043,590 + -3.3 3,043,590 + -2.6 3,043,590 + -3.3 3,043,590 + -2.8 3,043,590 + -2.3 3,043,590 + -1.0 3,043,590 + -2.3 3,043,590 + -0.8 3,043,590 + -0.9 3,043,590 + -1.5 3,043,595 - -0.7 3,043,598 - -2.9 3,043,598 - -1.4 3,043,598 - -3.0 3,043,598 - -2.8 3,043,598 - -2.0 3,043,598 - -0.2 3,043,598 - -0.8 3,043,598 - -0.7 3,043,598 - -5.1 3,043,598 - -1.2 3,043,598 - -3.0 3,043,598 - -1.8 3,043,672 + -3.5 3,043,672 + -1.7 3,043,673 - -3.1 3,043,724 + MPMX20_02895 0.13 -1.3 3,043,794 + MPMX20_02895 0.31 -0.5 3,043,836 - MPMX20_02895 0.42 -1.5 3,043,907 + MPMX20_02895 0.60 -0.8 3,043,907 + MPMX20_02895 0.60 +0.8 3,043,915 - MPMX20_02895 0.62 -2.3 3,043,921 + MPMX20_02895 0.64 -1.4 3,043,921 + MPMX20_02895 0.64 -1.8 3,043,929 - MPMX20_02895 0.66 +0.3 3,043,929 - MPMX20_02895 0.66 -2.2 3,043,934 - MPMX20_02895 0.67 -2.4 3,043,949 - MPMX20_02895 0.71 -0.6 3,043,972 + MPMX20_02895 0.77 -1.2 3,044,046 - -2.8 3,044,063 - -2.7 3,044,071 - +0.4 3,044,113 - MPMX20_02896 0.13 -2.6 3,044,118 - MPMX20_02896 0.14 -3.9 3,044,133 - MPMX20_02896 0.17 -1.9 3,044,256 + MPMX20_02896 0.45 -0.8 3,044,262 - MPMX20_02896 0.46 -2.3 3,044,266 + MPMX20_02896 0.47 -2.0 3,044,296 + MPMX20_02896 0.54 +0.4 3,044,311 - MPMX20_02896 0.58 -3.8 3,044,329 + MPMX20_02896 0.62 -2.3 3,044,349 + MPMX20_02896 0.66 -1.4 3,044,364 - MPMX20_02896 0.70 -2.7 3,044,372 - MPMX20_02896 0.71 -2.0 3,044,396 + MPMX20_02896 0.77 -3.7 3,044,416 + MPMX20_02896 0.81 -2.6 3,044,416 + MPMX20_02896 0.81 -2.7 3,044,416 + MPMX20_02896 0.81 -2.5 3,044,416 + MPMX20_02896 0.81 -1.9 3,044,416 + MPMX20_02896 0.81 -1.0 3,044,416 + MPMX20_02896 0.81 -3.4 3,044,424 - MPMX20_02896 0.83 -2.4 3,044,424 - MPMX20_02896 0.83 -0.2 3,044,424 - MPMX20_02896 0.83 -2.5 3,044,424 - MPMX20_02896 0.83 -2.4 3,044,424 - MPMX20_02896 0.83 -2.3 3,044,424 - MPMX20_02896 0.83 -2.1 3,044,424 - MPMX20_02896 0.83 -2.3 3,044,426 + MPMX20_02896 0.84 +0.2 3,044,426 + MPMX20_02896 0.84 -3.6 3,044,426 + MPMX20_02896 0.84 +1.3 3,044,426 + MPMX20_02896 0.84 -3.0 3,044,426 - MPMX20_02896 0.84 -1.5 3,044,434 - MPMX20_02896 0.85 -3.2 3,044,434 - MPMX20_02896 0.85 -3.0 3,044,434 - MPMX20_02896 0.85 -0.7 3,044,434 - MPMX20_02896 0.85 -2.8 3,044,451 + MPMX20_02896 0.89 -1.5 3,044,503 + -1.1 3,044,506 - -2.3 3,044,536 - MPMX20_02897 0.13 -0.9 3,044,594 - MPMX20_02897 0.34 -1.5 3,044,594 - MPMX20_02897 0.34 -0.8 3,044,657 + MPMX20_02897 0.57 -0.0 3,044,657 + MPMX20_02897 0.57 -2.6 3,044,660 - MPMX20_02897 0.58 -1.6 3,044,665 - MPMX20_02897 0.59 -1.9 3,044,665 - MPMX20_02897 0.59 +1.8 3,044,665 - MPMX20_02897 0.59 -0.5 3,044,670 + MPMX20_02897 0.61 +0.9 3,044,784 - -0.5 3,044,801 - -1.2 3,044,801 - +0.7 3,044,887 - MPMX20_02898 0.28 -2.4 3,044,889 + MPMX20_02898 0.29 -1.1 3,044,897 - MPMX20_02898 0.31 -2.3 3,044,897 - MPMX20_02898 0.31 +0.3 3,044,897 - MPMX20_02898 0.31 +0.5 3,044,966 + MPMX20_02898 0.48 -1.8 3,044,966 + MPMX20_02898 0.48 -0.9 3,044,968 + MPMX20_02898 0.49 -2.2 3,044,974 - MPMX20_02898 0.50 -1.3 3,045,002 + MPMX20_02898 0.57 -1.2 3,045,010 - MPMX20_02898 0.59 +2.6 3,045,013 + MPMX20_02898 0.60 -0.5 3,045,038 - MPMX20_02898 0.66 -1.3 3,045,038 - MPMX20_02898 0.66 -1.3 3,045,045 - MPMX20_02898 0.68 -0.8 3,045,046 + MPMX20_02898 0.68 -1.6 3,045,046 + MPMX20_02898 0.68 -0.2 3,045,054 - MPMX20_02898 0.70 -0.4 3,045,054 - MPMX20_02898 0.70 -1.5 3,045,054 - MPMX20_02898 0.70 -0.2 3,045,054 - MPMX20_02898 0.70 -1.9 3,045,078 - MPMX20_02898 0.76 -0.5 3,045,114 + MPMX20_02898 0.85 -0.6 3,045,115 + MPMX20_02898 0.85 -1.7 3,045,122 - MPMX20_02898 0.87 -0.9 3,045,122 - MPMX20_02898 0.87 -0.6 3,045,156 - -1.3 3,045,156 - -1.5 3,045,195 + +0.1 3,045,195 + -2.0 3,045,203 - -3.1 3,045,283 + -0.9 3,045,355 - -0.3 3,045,406 + -1.5 3,045,412 + -0.9 3,045,491 + -0.6 3,045,491 + +0.4 3,045,491 + -0.4 3,045,491 + -2.1 3,045,491 + -1.8 3,045,491 + -2.4 3,045,491 + +0.4 3,045,491 + -2.3 3,045,491 + -0.3 3,045,491 + -3.1 3,045,491 + -1.1 3,045,491 + -2.6 3,045,491 + -0.3
Or see this region's nucleotide sequence