Experiment: 0.1X LB plate, 1:1 coculture with Paraburkholderia pittii CO4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02692 and MPMX20_02693 are separated by 111 nucleotides MPMX20_02693 and MPMX20_02694 are separated by 207 nucleotides MPMX20_02694 and MPMX20_02695 are separated by 37 nucleotides MPMX20_02695 and MPMX20_02696 are separated by 107 nucleotides
MPMX20_02692: MPMX20_02692 - Ferrichrome outer membrane transporter/phage receptor, at 2,844,952 to 2,847,054
_02692
MPMX20_02693: MPMX20_02693 - hypothetical protein, at 2,847,166 to 2,847,420
_02693
MPMX20_02694: MPMX20_02694 - Flagellar brake protein YcgR, at 2,847,628 to 2,848,359
_02694
MPMX20_02695: MPMX20_02695 - Endo-type membrane-bound lytic murein transglycosylase A, at 2,848,397 to 2,849,008
_02695
MPMX20_02696: MPMX20_02696 - Murein tetrapeptide carboxypeptidase, at 2,849,116 to 2,850,030
_02696
Position (kb)
2847
2848
2849 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2846.632 kb on - strand, within MPMX20_02692 at 2846.695 kb on + strand, within MPMX20_02692 at 2846.703 kb on - strand, within MPMX20_02692 at 2846.768 kb on - strand, within MPMX20_02692 at 2846.864 kb on + strand at 2846.882 kb on + strand at 2846.882 kb on + strand at 2846.882 kb on + strand at 2846.890 kb on - strand at 2846.936 kb on + strand at 2846.944 kb on - strand at 2846.946 kb on + strand at 2846.946 kb on + strand at 2846.949 kb on - strand at 2846.949 kb on - strand at 2846.954 kb on - strand at 2846.954 kb on - strand at 2846.954 kb on - strand at 2846.954 kb on - strand at 2847.014 kb on + strand at 2847.014 kb on + strand at 2847.022 kb on - strand at 2847.164 kb on + strand at 2847.181 kb on - strand at 2847.225 kb on + strand, within MPMX20_02693 at 2847.225 kb on + strand, within MPMX20_02693 at 2847.325 kb on + strand, within MPMX20_02693 at 2847.369 kb on - strand, within MPMX20_02693 at 2847.423 kb on - strand at 2847.438 kb on + strand at 2847.438 kb on + strand at 2847.438 kb on + strand at 2847.438 kb on + strand at 2847.446 kb on - strand at 2847.446 kb on - strand at 2847.446 kb on - strand at 2847.461 kb on + strand at 2847.461 kb on - strand at 2847.528 kb on - strand at 2847.574 kb on + strand at 2847.582 kb on - strand at 2847.589 kb on + strand at 2847.597 kb on - strand at 2847.597 kb on - strand at 2847.597 kb on - strand at 2847.597 kb on - strand at 2847.603 kb on + strand at 2847.607 kb on - strand at 2847.608 kb on + strand at 2847.616 kb on + strand at 2847.681 kb on - strand at 2847.681 kb on - strand at 2847.840 kb on - strand, within MPMX20_02694 at 2847.948 kb on + strand, within MPMX20_02694 at 2847.948 kb on + strand, within MPMX20_02694 at 2847.953 kb on + strand, within MPMX20_02694 at 2847.956 kb on - strand, within MPMX20_02694 at 2847.956 kb on - strand, within MPMX20_02694 at 2847.993 kb on + strand, within MPMX20_02694 at 2847.993 kb on + strand, within MPMX20_02694 at 2847.993 kb on + strand, within MPMX20_02694 at 2847.993 kb on + strand, within MPMX20_02694 at 2847.993 kb on + strand, within MPMX20_02694 at 2848.001 kb on - strand, within MPMX20_02694 at 2848.116 kb on + strand, within MPMX20_02694 at 2848.116 kb on + strand, within MPMX20_02694 at 2848.116 kb on + strand, within MPMX20_02694 at 2848.149 kb on + strand, within MPMX20_02694 at 2848.157 kb on - strand, within MPMX20_02694 at 2848.157 kb on - strand, within MPMX20_02694 at 2848.157 kb on - strand, within MPMX20_02694 at 2848.157 kb on - strand, within MPMX20_02694 at 2848.196 kb on - strand, within MPMX20_02694 at 2848.206 kb on + strand, within MPMX20_02694 at 2848.213 kb on - strand, within MPMX20_02694 at 2848.297 kb on - strand at 2848.336 kb on - strand at 2848.338 kb on - strand at 2848.338 kb on - strand at 2848.339 kb on - strand at 2848.389 kb on - strand at 2848.500 kb on + strand, within MPMX20_02695 at 2848.542 kb on + strand, within MPMX20_02695 at 2848.550 kb on - strand, within MPMX20_02695 at 2848.600 kb on + strand, within MPMX20_02695 at 2848.608 kb on - strand, within MPMX20_02695 at 2848.730 kb on - strand, within MPMX20_02695 at 2848.763 kb on - strand, within MPMX20_02695 at 2848.765 kb on + strand, within MPMX20_02695 at 2848.779 kb on - strand, within MPMX20_02695 at 2848.865 kb on - strand, within MPMX20_02695 at 2848.903 kb on - strand, within MPMX20_02695 at 2848.958 kb on + strand at 2849.035 kb on + strand at 2849.070 kb on - strand at 2849.116 kb on - strand at 2849.145 kb on + strand at 2849.171 kb on - strand at 2849.301 kb on + strand, within MPMX20_02696 at 2849.340 kb on + strand, within MPMX20_02696 at 2849.357 kb on + strand, within MPMX20_02696
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, 1:1 coculture with Paraburkholderia pittii CO4 remove 2,846,632 - MPMX20_02692 0.80 +0.3 2,846,695 + MPMX20_02692 0.83 +1.4 2,846,703 - MPMX20_02692 0.83 +0.0 2,846,768 - MPMX20_02692 0.86 +1.7 2,846,864 + -1.2 2,846,882 + -0.7 2,846,882 + +0.8 2,846,882 + +1.6 2,846,890 - +0.0 2,846,936 + -1.1 2,846,944 - -0.8 2,846,946 + -0.5 2,846,946 + -1.2 2,846,949 - +1.6 2,846,949 - +0.0 2,846,954 - -0.1 2,846,954 - -0.1 2,846,954 - +1.4 2,846,954 - +0.5 2,847,014 + +1.6 2,847,014 + +1.0 2,847,022 - -1.4 2,847,164 + +0.6 2,847,181 - -1.0 2,847,225 + MPMX20_02693 0.23 -2.1 2,847,225 + MPMX20_02693 0.23 -0.6 2,847,325 + MPMX20_02693 0.62 -1.3 2,847,369 - MPMX20_02693 0.80 -1.2 2,847,423 - -0.2 2,847,438 + -2.3 2,847,438 + -0.7 2,847,438 + -1.8 2,847,438 + -0.9 2,847,446 - -0.9 2,847,446 - +1.8 2,847,446 - -1.8 2,847,461 + +1.3 2,847,461 - -0.6 2,847,528 - -0.1 2,847,574 + -1.9 2,847,582 - -0.8 2,847,589 + -0.8 2,847,597 - +0.6 2,847,597 - -0.3 2,847,597 - +1.1 2,847,597 - +1.1 2,847,603 + +0.2 2,847,607 - +0.8 2,847,608 + -1.4 2,847,616 + -0.1 2,847,681 - +0.2 2,847,681 - -0.3 2,847,840 - MPMX20_02694 0.29 +1.1 2,847,948 + MPMX20_02694 0.44 +0.2 2,847,948 + MPMX20_02694 0.44 +3.1 2,847,953 + MPMX20_02694 0.44 -0.9 2,847,956 - MPMX20_02694 0.45 -1.6 2,847,956 - MPMX20_02694 0.45 -0.4 2,847,993 + MPMX20_02694 0.50 -1.7 2,847,993 + MPMX20_02694 0.50 +0.0 2,847,993 + MPMX20_02694 0.50 -0.1 2,847,993 + MPMX20_02694 0.50 -0.9 2,847,993 + MPMX20_02694 0.50 +0.4 2,848,001 - MPMX20_02694 0.51 +0.3 2,848,116 + MPMX20_02694 0.67 +2.6 2,848,116 + MPMX20_02694 0.67 -0.7 2,848,116 + MPMX20_02694 0.67 -1.3 2,848,149 + MPMX20_02694 0.71 +2.0 2,848,157 - MPMX20_02694 0.72 -0.7 2,848,157 - MPMX20_02694 0.72 +0.2 2,848,157 - MPMX20_02694 0.72 +0.5 2,848,157 - MPMX20_02694 0.72 +2.0 2,848,196 - MPMX20_02694 0.78 +2.1 2,848,206 + MPMX20_02694 0.79 +0.3 2,848,213 - MPMX20_02694 0.80 -0.3 2,848,297 - -2.5 2,848,336 - +1.1 2,848,338 - +2.6 2,848,338 - -1.2 2,848,339 - -0.5 2,848,389 - +0.8 2,848,500 + MPMX20_02695 0.17 -1.0 2,848,542 + MPMX20_02695 0.24 +1.8 2,848,550 - MPMX20_02695 0.25 -0.2 2,848,600 + MPMX20_02695 0.33 +0.6 2,848,608 - MPMX20_02695 0.34 +0.8 2,848,730 - MPMX20_02695 0.54 -0.7 2,848,763 - MPMX20_02695 0.60 -0.3 2,848,765 + MPMX20_02695 0.60 -0.3 2,848,779 - MPMX20_02695 0.62 -1.0 2,848,865 - MPMX20_02695 0.76 +1.7 2,848,903 - MPMX20_02695 0.83 -0.7 2,848,958 + +1.8 2,849,035 + +0.6 2,849,070 - -0.2 2,849,116 - -0.9 2,849,145 + -3.3 2,849,171 - -3.6 2,849,301 + MPMX20_02696 0.20 -1.7 2,849,340 + MPMX20_02696 0.24 -1.0 2,849,357 + MPMX20_02696 0.26 -2.3
Or see this region's nucleotide sequence