Experiment: 0.1X LB plate, 1:1 coculture with Paraburkholderia pittii CO4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01505 and MPMX20_01506 are separated by 6 nucleotides MPMX20_01506 and MPMX20_01507 are separated by 20 nucleotides MPMX20_01507 and MPMX20_01508 are separated by 226 nucleotides MPMX20_01508 and MPMX20_01509 are separated by 97 nucleotides
MPMX20_01505: MPMX20_01505 - Arginine ABC transporter permease protein ArtQ, at 1,574,004 to 1,574,720
_01505
MPMX20_01506: MPMX20_01506 - Putative ABC transporter arginine-binding protein 2, at 1,574,727 to 1,575,458
_01506
MPMX20_01507: MPMX20_01507 - Arginine transport ATP-binding protein ArtP, at 1,575,479 to 1,576,207
_01507
MPMX20_01508: MPMX20_01508 - putative lipoprotein YbjP, at 1,576,434 to 1,576,952
_01508
MPMX20_01509: MPMX20_01509 - hypothetical protein, at 1,577,050 to 1,577,373
_01509
Position (kb)
1575
1576
1577 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1574.482 kb on - strand, within MPMX20_01505 at 1574.512 kb on - strand, within MPMX20_01505 at 1574.568 kb on + strand, within MPMX20_01505 at 1574.573 kb on + strand, within MPMX20_01505 at 1574.576 kb on - strand, within MPMX20_01505 at 1574.578 kb on + strand, within MPMX20_01505 at 1574.578 kb on + strand, within MPMX20_01505 at 1574.581 kb on - strand, within MPMX20_01505 at 1574.621 kb on + strand, within MPMX20_01505 at 1574.690 kb on - strand at 1574.700 kb on - strand at 1574.705 kb on - strand at 1574.813 kb on + strand, within MPMX20_01506 at 1574.813 kb on + strand, within MPMX20_01506 at 1574.818 kb on + strand, within MPMX20_01506 at 1574.821 kb on - strand, within MPMX20_01506 at 1574.821 kb on - strand, within MPMX20_01506 at 1574.821 kb on - strand, within MPMX20_01506 at 1574.826 kb on - strand, within MPMX20_01506 at 1574.826 kb on - strand, within MPMX20_01506 at 1574.834 kb on + strand, within MPMX20_01506 at 1574.841 kb on + strand, within MPMX20_01506 at 1574.841 kb on + strand, within MPMX20_01506 at 1574.841 kb on + strand, within MPMX20_01506 at 1574.841 kb on + strand, within MPMX20_01506 at 1574.841 kb on + strand, within MPMX20_01506 at 1574.841 kb on + strand, within MPMX20_01506 at 1574.844 kb on - strand, within MPMX20_01506 at 1574.849 kb on - strand, within MPMX20_01506 at 1574.849 kb on - strand, within MPMX20_01506 at 1574.849 kb on - strand, within MPMX20_01506 at 1574.849 kb on - strand, within MPMX20_01506 at 1574.849 kb on - strand, within MPMX20_01506 at 1574.859 kb on - strand, within MPMX20_01506 at 1574.890 kb on + strand, within MPMX20_01506 at 1575.063 kb on - strand, within MPMX20_01506 at 1575.082 kb on - strand, within MPMX20_01506 at 1575.154 kb on + strand, within MPMX20_01506 at 1575.154 kb on + strand, within MPMX20_01506 at 1575.269 kb on + strand, within MPMX20_01506 at 1575.277 kb on - strand, within MPMX20_01506 at 1575.278 kb on - strand, within MPMX20_01506 at 1575.297 kb on - strand, within MPMX20_01506 at 1575.301 kb on + strand, within MPMX20_01506 at 1575.372 kb on - strand, within MPMX20_01506 at 1575.401 kb on - strand at 1575.401 kb on - strand at 1575.416 kb on + strand at 1575.416 kb on + strand at 1575.474 kb on - strand at 1575.538 kb on - strand at 1575.538 kb on - strand at 1575.777 kb on + strand, within MPMX20_01507 at 1575.785 kb on - strand, within MPMX20_01507 at 1575.810 kb on + strand, within MPMX20_01507 at 1575.818 kb on - strand, within MPMX20_01507 at 1575.818 kb on - strand, within MPMX20_01507 at 1575.818 kb on - strand, within MPMX20_01507 at 1575.825 kb on + strand, within MPMX20_01507 at 1575.922 kb on - strand, within MPMX20_01507 at 1575.922 kb on - strand, within MPMX20_01507 at 1575.922 kb on - strand, within MPMX20_01507 at 1575.932 kb on - strand, within MPMX20_01507 at 1575.978 kb on - strand, within MPMX20_01507 at 1576.023 kb on + strand, within MPMX20_01507 at 1576.031 kb on - strand, within MPMX20_01507 at 1576.041 kb on - strand, within MPMX20_01507 at 1576.060 kb on + strand, within MPMX20_01507 at 1576.060 kb on + strand, within MPMX20_01507 at 1576.060 kb on + strand, within MPMX20_01507 at 1576.068 kb on - strand, within MPMX20_01507 at 1576.068 kb on - strand, within MPMX20_01507 at 1576.068 kb on - strand, within MPMX20_01507 at 1576.105 kb on - strand, within MPMX20_01507 at 1576.157 kb on + strand at 1576.170 kb on - strand at 1576.195 kb on + strand at 1576.195 kb on + strand at 1576.195 kb on + strand at 1576.195 kb on + strand at 1576.203 kb on - strand at 1576.203 kb on - strand at 1576.203 kb on - strand at 1576.203 kb on - strand at 1576.215 kb on + strand at 1576.215 kb on + strand at 1576.215 kb on + strand at 1576.215 kb on + strand at 1576.223 kb on - strand at 1576.237 kb on - strand at 1576.513 kb on + strand, within MPMX20_01508 at 1576.518 kb on + strand, within MPMX20_01508 at 1576.518 kb on + strand, within MPMX20_01508 at 1576.518 kb on + strand, within MPMX20_01508 at 1576.518 kb on + strand, within MPMX20_01508 at 1576.567 kb on + strand, within MPMX20_01508 at 1576.589 kb on + strand, within MPMX20_01508 at 1576.647 kb on + strand, within MPMX20_01508 at 1576.655 kb on - strand, within MPMX20_01508 at 1576.676 kb on + strand, within MPMX20_01508 at 1576.681 kb on + strand, within MPMX20_01508 at 1576.681 kb on + strand, within MPMX20_01508 at 1576.689 kb on - strand, within MPMX20_01508 at 1576.689 kb on - strand, within MPMX20_01508 at 1576.701 kb on - strand, within MPMX20_01508 at 1576.720 kb on + strand, within MPMX20_01508 at 1576.782 kb on + strand, within MPMX20_01508 at 1576.817 kb on - strand, within MPMX20_01508 at 1576.893 kb on + strand, within MPMX20_01508 at 1576.903 kb on + strand at 1576.940 kb on - strand at 1577.015 kb on - strand at 1577.022 kb on - strand at 1577.022 kb on - strand at 1577.022 kb on - strand at 1577.072 kb on + strand at 1577.072 kb on + strand at 1577.080 kb on - strand at 1577.087 kb on + strand, within MPMX20_01509 at 1577.093 kb on - strand, within MPMX20_01509 at 1577.100 kb on - strand, within MPMX20_01509 at 1577.124 kb on - strand, within MPMX20_01509 at 1577.130 kb on - strand, within MPMX20_01509 at 1577.194 kb on - strand, within MPMX20_01509 at 1577.206 kb on + strand, within MPMX20_01509
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, 1:1 coculture with Paraburkholderia pittii CO4 remove 1,574,482 - MPMX20_01505 0.67 +0.0 1,574,512 - MPMX20_01505 0.71 -3.3 1,574,568 + MPMX20_01505 0.79 -0.2 1,574,573 + MPMX20_01505 0.79 -1.2 1,574,576 - MPMX20_01505 0.80 -1.1 1,574,578 + MPMX20_01505 0.80 -0.8 1,574,578 + MPMX20_01505 0.80 -0.6 1,574,581 - MPMX20_01505 0.80 -1.4 1,574,621 + MPMX20_01505 0.86 -0.7 1,574,690 - -0.9 1,574,700 - -0.0 1,574,705 - -0.6 1,574,813 + MPMX20_01506 0.12 +0.6 1,574,813 + MPMX20_01506 0.12 -0.0 1,574,818 + MPMX20_01506 0.12 +1.0 1,574,821 - MPMX20_01506 0.13 +0.1 1,574,821 - MPMX20_01506 0.13 -0.0 1,574,821 - MPMX20_01506 0.13 -0.8 1,574,826 - MPMX20_01506 0.14 +0.7 1,574,826 - MPMX20_01506 0.14 -0.4 1,574,834 + MPMX20_01506 0.15 -0.0 1,574,841 + MPMX20_01506 0.16 -2.0 1,574,841 + MPMX20_01506 0.16 +0.8 1,574,841 + MPMX20_01506 0.16 +0.3 1,574,841 + MPMX20_01506 0.16 +0.2 1,574,841 + MPMX20_01506 0.16 -1.4 1,574,841 + MPMX20_01506 0.16 -2.0 1,574,844 - MPMX20_01506 0.16 -1.5 1,574,849 - MPMX20_01506 0.17 -0.8 1,574,849 - MPMX20_01506 0.17 -1.8 1,574,849 - MPMX20_01506 0.17 -0.9 1,574,849 - MPMX20_01506 0.17 -0.3 1,574,849 - MPMX20_01506 0.17 +1.0 1,574,859 - MPMX20_01506 0.18 -0.1 1,574,890 + MPMX20_01506 0.22 +0.1 1,575,063 - MPMX20_01506 0.46 -1.8 1,575,082 - MPMX20_01506 0.48 -1.0 1,575,154 + MPMX20_01506 0.58 -0.6 1,575,154 + MPMX20_01506 0.58 -0.9 1,575,269 + MPMX20_01506 0.74 -0.6 1,575,277 - MPMX20_01506 0.75 -0.4 1,575,278 - MPMX20_01506 0.75 -1.5 1,575,297 - MPMX20_01506 0.78 -1.4 1,575,301 + MPMX20_01506 0.78 -1.0 1,575,372 - MPMX20_01506 0.88 -1.0 1,575,401 - -1.9 1,575,401 - -0.0 1,575,416 + +1.0 1,575,416 + +0.3 1,575,474 - +0.6 1,575,538 - -2.4 1,575,538 - -1.2 1,575,777 + MPMX20_01507 0.41 -0.9 1,575,785 - MPMX20_01507 0.42 +0.5 1,575,810 + MPMX20_01507 0.45 -2.3 1,575,818 - MPMX20_01507 0.47 -2.3 1,575,818 - MPMX20_01507 0.47 -0.7 1,575,818 - MPMX20_01507 0.47 -1.3 1,575,825 + MPMX20_01507 0.47 -0.3 1,575,922 - MPMX20_01507 0.61 -0.7 1,575,922 - MPMX20_01507 0.61 -2.1 1,575,922 - MPMX20_01507 0.61 -1.2 1,575,932 - MPMX20_01507 0.62 -0.5 1,575,978 - MPMX20_01507 0.68 -0.1 1,576,023 + MPMX20_01507 0.75 +1.9 1,576,031 - MPMX20_01507 0.76 -0.2 1,576,041 - MPMX20_01507 0.77 -0.4 1,576,060 + MPMX20_01507 0.80 -2.4 1,576,060 + MPMX20_01507 0.80 -2.2 1,576,060 + MPMX20_01507 0.80 -0.1 1,576,068 - MPMX20_01507 0.81 -0.9 1,576,068 - MPMX20_01507 0.81 +0.5 1,576,068 - MPMX20_01507 0.81 -1.4 1,576,105 - MPMX20_01507 0.86 -0.3 1,576,157 + -0.5 1,576,170 - -0.2 1,576,195 + +1.0 1,576,195 + -1.2 1,576,195 + -1.1 1,576,195 + +1.6 1,576,203 - -0.6 1,576,203 - -0.7 1,576,203 - -1.1 1,576,203 - +0.6 1,576,215 + -3.4 1,576,215 + +0.5 1,576,215 + -0.0 1,576,215 + -1.3 1,576,223 - -0.0 1,576,237 - -1.4 1,576,513 + MPMX20_01508 0.15 +0.6 1,576,518 + MPMX20_01508 0.16 -0.6 1,576,518 + MPMX20_01508 0.16 -3.3 1,576,518 + MPMX20_01508 0.16 +2.1 1,576,518 + MPMX20_01508 0.16 -0.6 1,576,567 + MPMX20_01508 0.26 -0.7 1,576,589 + MPMX20_01508 0.30 -0.4 1,576,647 + MPMX20_01508 0.41 -0.3 1,576,655 - MPMX20_01508 0.43 +0.1 1,576,676 + MPMX20_01508 0.47 +0.0 1,576,681 + MPMX20_01508 0.48 +2.6 1,576,681 + MPMX20_01508 0.48 -0.1 1,576,689 - MPMX20_01508 0.49 +1.6 1,576,689 - MPMX20_01508 0.49 -1.7 1,576,701 - MPMX20_01508 0.51 +2.7 1,576,720 + MPMX20_01508 0.55 +0.6 1,576,782 + MPMX20_01508 0.67 -1.0 1,576,817 - MPMX20_01508 0.74 -1.3 1,576,893 + MPMX20_01508 0.88 -1.4 1,576,903 + +1.6 1,576,940 - +3.3 1,577,015 - +0.7 1,577,022 - +0.3 1,577,022 - +0.0 1,577,022 - +1.4 1,577,072 + +1.1 1,577,072 + -0.0 1,577,080 - -0.5 1,577,087 + MPMX20_01509 0.11 -1.7 1,577,093 - MPMX20_01509 0.13 -2.1 1,577,100 - MPMX20_01509 0.15 +2.4 1,577,124 - MPMX20_01509 0.23 -1.7 1,577,130 - MPMX20_01509 0.25 -0.9 1,577,194 - MPMX20_01509 0.44 +1.6 1,577,206 + MPMX20_01509 0.48 +0.6
Or see this region's nucleotide sequence