Experiment: 0.1X LB plate, 1:1 coculture with Paraburkholderia pittii CO4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01502 and MPMX20_01503 are separated by 63 nucleotides MPMX20_01503 and MPMX20_01504 are separated by 177 nucleotides MPMX20_01504 and MPMX20_01505 overlap by 1 nucleotides
MPMX20_01502: MPMX20_01502 - Adaptive-response sensory-kinase SasA, at 1,570,897 to 1,572,363
_01502
MPMX20_01503: MPMX20_01503 - ABC transporter arginine-binding protein 1, at 1,572,427 to 1,573,158
_01503
MPMX20_01504: MPMX20_01504 - Arginine ABC transporter permease protein ArtM, at 1,573,336 to 1,574,004
_01504
MPMX20_01505: MPMX20_01505 - Arginine ABC transporter permease protein ArtQ, at 1,574,004 to 1,574,720
_01505
Position (kb)
1572
1573
1574 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1571.429 kb on - strand, within MPMX20_01502 at 1571.458 kb on - strand, within MPMX20_01502 at 1571.550 kb on - strand, within MPMX20_01502 at 1571.560 kb on - strand, within MPMX20_01502 at 1571.569 kb on - strand, within MPMX20_01502 at 1571.613 kb on - strand, within MPMX20_01502 at 1571.664 kb on - strand, within MPMX20_01502 at 1571.744 kb on + strand, within MPMX20_01502 at 1571.745 kb on - strand, within MPMX20_01502 at 1571.835 kb on - strand, within MPMX20_01502 at 1571.898 kb on - strand, within MPMX20_01502 at 1572.144 kb on + strand, within MPMX20_01502 at 1572.150 kb on + strand, within MPMX20_01502 at 1572.157 kb on - strand, within MPMX20_01502 at 1572.257 kb on + strand at 1572.358 kb on - strand at 1572.541 kb on + strand, within MPMX20_01503 at 1572.541 kb on + strand, within MPMX20_01503 at 1572.541 kb on + strand, within MPMX20_01503 at 1572.541 kb on + strand, within MPMX20_01503 at 1572.541 kb on + strand, within MPMX20_01503 at 1572.541 kb on + strand, within MPMX20_01503 at 1572.549 kb on - strand, within MPMX20_01503 at 1572.549 kb on - strand, within MPMX20_01503 at 1572.549 kb on - strand, within MPMX20_01503 at 1572.549 kb on - strand, within MPMX20_01503 at 1572.549 kb on - strand, within MPMX20_01503 at 1572.549 kb on - strand, within MPMX20_01503 at 1572.549 kb on - strand, within MPMX20_01503 at 1572.549 kb on - strand, within MPMX20_01503 at 1572.597 kb on + strand, within MPMX20_01503 at 1572.605 kb on - strand, within MPMX20_01503 at 1572.638 kb on - strand, within MPMX20_01503 at 1572.697 kb on + strand, within MPMX20_01503 at 1572.705 kb on - strand, within MPMX20_01503 at 1572.755 kb on + strand, within MPMX20_01503 at 1572.790 kb on - strand, within MPMX20_01503 at 1572.842 kb on + strand, within MPMX20_01503 at 1572.842 kb on + strand, within MPMX20_01503 at 1572.879 kb on + strand, within MPMX20_01503 at 1572.887 kb on - strand, within MPMX20_01503 at 1572.887 kb on - strand, within MPMX20_01503 at 1572.939 kb on + strand, within MPMX20_01503 at 1572.948 kb on - strand, within MPMX20_01503 at 1572.949 kb on + strand, within MPMX20_01503 at 1572.961 kb on - strand, within MPMX20_01503 at 1572.961 kb on - strand, within MPMX20_01503 at 1573.007 kb on - strand, within MPMX20_01503 at 1573.054 kb on + strand, within MPMX20_01503 at 1573.191 kb on - strand at 1573.191 kb on - strand at 1573.191 kb on - strand at 1573.369 kb on - strand at 1573.379 kb on - strand at 1573.407 kb on + strand, within MPMX20_01504 at 1573.412 kb on + strand, within MPMX20_01504 at 1573.415 kb on - strand, within MPMX20_01504 at 1573.430 kb on + strand, within MPMX20_01504 at 1573.454 kb on - strand, within MPMX20_01504 at 1573.454 kb on - strand, within MPMX20_01504 at 1573.454 kb on - strand, within MPMX20_01504 at 1573.454 kb on - strand, within MPMX20_01504 at 1573.460 kb on + strand, within MPMX20_01504 at 1573.487 kb on + strand, within MPMX20_01504 at 1573.487 kb on + strand, within MPMX20_01504 at 1573.487 kb on + strand, within MPMX20_01504 at 1573.495 kb on - strand, within MPMX20_01504 at 1573.505 kb on + strand, within MPMX20_01504 at 1573.505 kb on + strand, within MPMX20_01504 at 1573.513 kb on - strand, within MPMX20_01504 at 1573.623 kb on + strand, within MPMX20_01504 at 1573.636 kb on - strand, within MPMX20_01504 at 1573.636 kb on - strand, within MPMX20_01504 at 1573.638 kb on + strand, within MPMX20_01504 at 1573.647 kb on - strand, within MPMX20_01504 at 1573.662 kb on + strand, within MPMX20_01504 at 1573.778 kb on + strand, within MPMX20_01504 at 1573.791 kb on - strand, within MPMX20_01504 at 1573.813 kb on + strand, within MPMX20_01504 at 1573.821 kb on - strand, within MPMX20_01504 at 1573.838 kb on - strand, within MPMX20_01504 at 1573.838 kb on - strand, within MPMX20_01504 at 1573.873 kb on - strand, within MPMX20_01504 at 1573.873 kb on - strand, within MPMX20_01504 at 1573.953 kb on + strand at 1573.953 kb on + strand at 1573.973 kb on + strand at 1573.973 kb on + strand at 1573.974 kb on - strand at 1573.981 kb on - strand at 1573.981 kb on - strand at 1574.014 kb on - strand at 1574.014 kb on - strand at 1574.039 kb on + strand at 1574.039 kb on + strand at 1574.066 kb on - strand at 1574.129 kb on - strand, within MPMX20_01505
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, 1:1 coculture with Paraburkholderia pittii CO4 remove 1,571,429 - MPMX20_01502 0.36 -2.4 1,571,458 - MPMX20_01502 0.38 -1.6 1,571,550 - MPMX20_01502 0.45 -0.8 1,571,560 - MPMX20_01502 0.45 +0.9 1,571,569 - MPMX20_01502 0.46 -0.4 1,571,613 - MPMX20_01502 0.49 -1.1 1,571,664 - MPMX20_01502 0.52 +0.2 1,571,744 + MPMX20_01502 0.58 -3.2 1,571,745 - MPMX20_01502 0.58 -1.8 1,571,835 - MPMX20_01502 0.64 +2.7 1,571,898 - MPMX20_01502 0.68 -0.6 1,572,144 + MPMX20_01502 0.85 +0.9 1,572,150 + MPMX20_01502 0.85 -2.1 1,572,157 - MPMX20_01502 0.86 -0.4 1,572,257 + -1.7 1,572,358 - -1.0 1,572,541 + MPMX20_01503 0.16 -0.7 1,572,541 + MPMX20_01503 0.16 +1.3 1,572,541 + MPMX20_01503 0.16 +0.8 1,572,541 + MPMX20_01503 0.16 +0.6 1,572,541 + MPMX20_01503 0.16 -0.7 1,572,541 + MPMX20_01503 0.16 -1.4 1,572,549 - MPMX20_01503 0.17 +0.8 1,572,549 - MPMX20_01503 0.17 +0.3 1,572,549 - MPMX20_01503 0.17 -1.1 1,572,549 - MPMX20_01503 0.17 +2.6 1,572,549 - MPMX20_01503 0.17 +0.3 1,572,549 - MPMX20_01503 0.17 -0.7 1,572,549 - MPMX20_01503 0.17 -1.7 1,572,549 - MPMX20_01503 0.17 -0.7 1,572,597 + MPMX20_01503 0.23 +0.8 1,572,605 - MPMX20_01503 0.24 +0.8 1,572,638 - MPMX20_01503 0.29 -0.2 1,572,697 + MPMX20_01503 0.37 -1.5 1,572,705 - MPMX20_01503 0.38 -0.2 1,572,755 + MPMX20_01503 0.45 +0.4 1,572,790 - MPMX20_01503 0.50 +0.3 1,572,842 + MPMX20_01503 0.57 -1.7 1,572,842 + MPMX20_01503 0.57 +2.1 1,572,879 + MPMX20_01503 0.62 +0.4 1,572,887 - MPMX20_01503 0.63 -1.7 1,572,887 - MPMX20_01503 0.63 +0.8 1,572,939 + MPMX20_01503 0.70 +0.9 1,572,948 - MPMX20_01503 0.71 +0.1 1,572,949 + MPMX20_01503 0.71 -2.2 1,572,961 - MPMX20_01503 0.73 +0.6 1,572,961 - MPMX20_01503 0.73 +0.7 1,573,007 - MPMX20_01503 0.79 -2.5 1,573,054 + MPMX20_01503 0.86 +0.2 1,573,191 - +0.2 1,573,191 - -0.1 1,573,191 - -0.2 1,573,369 - -1.9 1,573,379 - +0.1 1,573,407 + MPMX20_01504 0.11 +1.6 1,573,412 + MPMX20_01504 0.11 -1.5 1,573,415 - MPMX20_01504 0.12 +0.4 1,573,430 + MPMX20_01504 0.14 -0.6 1,573,454 - MPMX20_01504 0.18 -1.5 1,573,454 - MPMX20_01504 0.18 -0.4 1,573,454 - MPMX20_01504 0.18 -0.6 1,573,454 - MPMX20_01504 0.18 +0.2 1,573,460 + MPMX20_01504 0.19 +0.3 1,573,487 + MPMX20_01504 0.23 -0.4 1,573,487 + MPMX20_01504 0.23 -0.4 1,573,487 + MPMX20_01504 0.23 +0.8 1,573,495 - MPMX20_01504 0.24 +0.3 1,573,505 + MPMX20_01504 0.25 +1.1 1,573,505 + MPMX20_01504 0.25 +1.1 1,573,513 - MPMX20_01504 0.26 -0.7 1,573,623 + MPMX20_01504 0.43 -2.5 1,573,636 - MPMX20_01504 0.45 -2.1 1,573,636 - MPMX20_01504 0.45 -0.7 1,573,638 + MPMX20_01504 0.45 -1.3 1,573,647 - MPMX20_01504 0.46 +0.3 1,573,662 + MPMX20_01504 0.49 -1.7 1,573,778 + MPMX20_01504 0.66 -0.6 1,573,791 - MPMX20_01504 0.68 -2.1 1,573,813 + MPMX20_01504 0.71 +1.0 1,573,821 - MPMX20_01504 0.72 -1.8 1,573,838 - MPMX20_01504 0.75 -1.4 1,573,838 - MPMX20_01504 0.75 -0.7 1,573,873 - MPMX20_01504 0.80 -1.2 1,573,873 - MPMX20_01504 0.80 -1.4 1,573,953 + -0.4 1,573,953 + -0.2 1,573,973 + -1.3 1,573,973 + -0.2 1,573,974 - -0.3 1,573,981 - -1.1 1,573,981 - -1.2 1,574,014 - -1.7 1,574,014 - -0.5 1,574,039 + -1.4 1,574,039 + -2.2 1,574,066 - -0.9 1,574,129 - MPMX20_01505 0.17 -0.1
Or see this region's nucleotide sequence