Experiment: 0.1X LB plate, 1:1 coculture with Paraburkholderia pittii CO4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_00082 and MPMX20_00083 are separated by 225 nucleotides MPMX20_00083 and MPMX20_00084 are separated by 2 nucleotides
MPMX20_00082: MPMX20_00082 - Xanthine permease XanP, at 83,135 to 84,526
_00082
MPMX20_00083: MPMX20_00083 - Sodium/glutamate symporter, at 84,752 to 85,954
_00083
MPMX20_00084: MPMX20_00084 - ATP-dependent DNA helicase RecG, at 85,957 to 88,038
_00084
Position (kb) 84
85
86 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 83.775 kb on + strand, within MPMX20_00082 at 83.775 kb on + strand, within MPMX20_00082 at 83.775 kb on + strand, within MPMX20_00082 at 83.783 kb on - strand, within MPMX20_00082 at 83.783 kb on - strand, within MPMX20_00082 at 83.814 kb on + strand, within MPMX20_00082 at 83.814 kb on + strand, within MPMX20_00082 at 83.990 kb on + strand, within MPMX20_00082 at 83.990 kb on + strand, within MPMX20_00082 at 84.024 kb on - strand, within MPMX20_00082 at 84.074 kb on + strand, within MPMX20_00082 at 84.087 kb on - strand, within MPMX20_00082 at 84.183 kb on - strand, within MPMX20_00082 at 84.194 kb on - strand, within MPMX20_00082 at 84.238 kb on + strand, within MPMX20_00082 at 84.246 kb on - strand, within MPMX20_00082 at 84.320 kb on - strand, within MPMX20_00082 at 84.326 kb on + strand, within MPMX20_00082 at 84.334 kb on - strand, within MPMX20_00082 at 84.505 kb on + strand at 84.698 kb on - strand at 84.705 kb on + strand at 84.705 kb on + strand at 84.705 kb on + strand at 84.713 kb on - strand at 84.713 kb on - strand at 84.729 kb on - strand at 84.818 kb on + strand at 84.818 kb on - strand at 84.826 kb on - strand at 84.826 kb on - strand at 84.866 kb on + strand at 84.887 kb on + strand, within MPMX20_00083 at 84.981 kb on + strand, within MPMX20_00083 at 84.981 kb on + strand, within MPMX20_00083 at 84.989 kb on - strand, within MPMX20_00083 at 84.989 kb on - strand, within MPMX20_00083 at 85.028 kb on + strand, within MPMX20_00083 at 85.043 kb on - strand, within MPMX20_00083 at 85.043 kb on - strand, within MPMX20_00083 at 85.186 kb on - strand, within MPMX20_00083 at 85.189 kb on + strand, within MPMX20_00083 at 85.237 kb on + strand, within MPMX20_00083 at 85.237 kb on + strand, within MPMX20_00083 at 85.259 kb on + strand, within MPMX20_00083 at 85.262 kb on - strand, within MPMX20_00083 at 85.381 kb on + strand, within MPMX20_00083 at 85.381 kb on + strand, within MPMX20_00083 at 85.439 kb on - strand, within MPMX20_00083 at 85.441 kb on + strand, within MPMX20_00083 at 85.486 kb on + strand, within MPMX20_00083 at 85.490 kb on + strand, within MPMX20_00083 at 85.624 kb on + strand, within MPMX20_00083 at 85.629 kb on + strand, within MPMX20_00083 at 85.656 kb on - strand, within MPMX20_00083 at 85.696 kb on + strand, within MPMX20_00083 at 85.713 kb on - strand, within MPMX20_00083 at 85.787 kb on + strand, within MPMX20_00083 at 85.879 kb on - strand at 85.931 kb on - strand at 86.024 kb on - strand at 86.024 kb on - strand at 86.024 kb on - strand at 86.316 kb on + strand, within MPMX20_00084 at 86.372 kb on - strand, within MPMX20_00084 at 86.461 kb on - strand, within MPMX20_00084 at 86.477 kb on + strand, within MPMX20_00084 at 86.525 kb on + strand, within MPMX20_00084 at 86.547 kb on + strand, within MPMX20_00084 at 86.555 kb on - strand, within MPMX20_00084 at 86.584 kb on - strand, within MPMX20_00084 at 86.584 kb on - strand, within MPMX20_00084 at 86.654 kb on - strand, within MPMX20_00084 at 86.670 kb on + strand, within MPMX20_00084 at 86.738 kb on - strand, within MPMX20_00084 at 86.753 kb on - strand, within MPMX20_00084 at 86.798 kb on - strand, within MPMX20_00084 at 86.831 kb on - strand, within MPMX20_00084 at 86.839 kb on + strand, within MPMX20_00084 at 86.880 kb on + strand, within MPMX20_00084 at 86.949 kb on + strand, within MPMX20_00084
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, 1:1 coculture with Paraburkholderia pittii CO4 remove 83,775 + MPMX20_00082 0.46 -0.2 83,775 + MPMX20_00082 0.46 -0.2 83,775 + MPMX20_00082 0.46 -1.2 83,783 - MPMX20_00082 0.47 -0.9 83,783 - MPMX20_00082 0.47 +0.3 83,814 + MPMX20_00082 0.49 -1.4 83,814 + MPMX20_00082 0.49 +0.2 83,990 + MPMX20_00082 0.61 -0.6 83,990 + MPMX20_00082 0.61 -1.0 84,024 - MPMX20_00082 0.64 +0.5 84,074 + MPMX20_00082 0.67 +0.3 84,087 - MPMX20_00082 0.68 +0.7 84,183 - MPMX20_00082 0.75 -0.3 84,194 - MPMX20_00082 0.76 +0.5 84,238 + MPMX20_00082 0.79 +0.2 84,246 - MPMX20_00082 0.80 -0.7 84,320 - MPMX20_00082 0.85 -1.0 84,326 + MPMX20_00082 0.86 -0.1 84,334 - MPMX20_00082 0.86 +1.1 84,505 + +0.9 84,698 - +0.9 84,705 + -1.0 84,705 + -3.3 84,705 + -1.3 84,713 - +1.6 84,713 - +0.1 84,729 - +2.6 84,818 + -1.3 84,818 - +3.2 84,826 - +2.0 84,826 - +5.9 84,866 + -0.7 84,887 + MPMX20_00083 0.11 +0.8 84,981 + MPMX20_00083 0.19 -1.2 84,981 + MPMX20_00083 0.19 -1.0 84,989 - MPMX20_00083 0.20 -1.2 84,989 - MPMX20_00083 0.20 -0.2 85,028 + MPMX20_00083 0.23 +2.6 85,043 - MPMX20_00083 0.24 -1.7 85,043 - MPMX20_00083 0.24 -1.5 85,186 - MPMX20_00083 0.36 -0.9 85,189 + MPMX20_00083 0.36 -1.2 85,237 + MPMX20_00083 0.40 +0.3 85,237 + MPMX20_00083 0.40 +0.4 85,259 + MPMX20_00083 0.42 -0.2 85,262 - MPMX20_00083 0.42 +1.4 85,381 + MPMX20_00083 0.52 +0.3 85,381 + MPMX20_00083 0.52 -0.7 85,439 - MPMX20_00083 0.57 -2.6 85,441 + MPMX20_00083 0.57 +0.3 85,486 + MPMX20_00083 0.61 -0.6 85,490 + MPMX20_00083 0.61 +0.7 85,624 + MPMX20_00083 0.72 -0.1 85,629 + MPMX20_00083 0.73 -0.8 85,656 - MPMX20_00083 0.75 -0.5 85,696 + MPMX20_00083 0.78 -1.2 85,713 - MPMX20_00083 0.80 -0.2 85,787 + MPMX20_00083 0.86 +0.1 85,879 - -0.2 85,931 - -0.1 86,024 - +0.9 86,024 - -0.7 86,024 - +0.1 86,316 + MPMX20_00084 0.17 -2.4 86,372 - MPMX20_00084 0.20 -1.9 86,461 - MPMX20_00084 0.24 +1.3 86,477 + MPMX20_00084 0.25 -0.2 86,525 + MPMX20_00084 0.27 -0.4 86,547 + MPMX20_00084 0.28 -2.9 86,555 - MPMX20_00084 0.29 +0.0 86,584 - MPMX20_00084 0.30 +1.0 86,584 - MPMX20_00084 0.30 -1.9 86,654 - MPMX20_00084 0.33 -0.9 86,670 + MPMX20_00084 0.34 -0.2 86,738 - MPMX20_00084 0.38 -1.8 86,753 - MPMX20_00084 0.38 -0.7 86,798 - MPMX20_00084 0.40 -0.4 86,831 - MPMX20_00084 0.42 +1.8 86,839 + MPMX20_00084 0.42 -0.4 86,880 + MPMX20_00084 0.44 -1.9 86,949 + MPMX20_00084 0.48 +1.2
Or see this region's nucleotide sequence