Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04342

Experiment: TSB plate, 1:1 coculture with Paraburkholderia pittii CO4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04341 and MPMX20_04342 are separated by 127 nucleotidesMPMX20_04342 and MPMX20_04343 overlap by 17 nucleotidesMPMX20_04343 and MPMX20_04344 are separated by 47 nucleotidesMPMX20_04344 and MPMX20_04345 are separated by 129 nucleotides MPMX20_04341: MPMX20_04341 - Signal recognition particle receptor FtsY, at 4,535,951 to 4,537,417 _04341 MPMX20_04342: MPMX20_04342 - Ribosomal RNA small subunit methyltransferase D, at 4,537,545 to 4,538,147 _04342 MPMX20_04343: MPMX20_04343 - hypothetical protein, at 4,538,131 to 4,538,412 _04343 MPMX20_04344: MPMX20_04344 - hypothetical protein, at 4,538,460 to 4,538,819 _04344 MPMX20_04345: MPMX20_04345 - hypothetical protein, at 4,538,949 to 4,539,575 _04345 Position (kb) 4537 4538 4539Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 4537.483 kb on - strandat 4537.483 kb on - strandat 4537.562 kb on - strandat 4537.570 kb on - strandat 4537.630 kb on + strand, within MPMX20_04342at 4537.630 kb on + strand, within MPMX20_04342at 4537.631 kb on + strand, within MPMX20_04342at 4537.638 kb on - strand, within MPMX20_04342at 4537.638 kb on - strand, within MPMX20_04342at 4537.638 kb on - strand, within MPMX20_04342at 4537.638 kb on - strand, within MPMX20_04342at 4537.638 kb on - strand, within MPMX20_04342at 4537.638 kb on - strand, within MPMX20_04342at 4537.647 kb on + strand, within MPMX20_04342at 4537.647 kb on + strand, within MPMX20_04342at 4537.695 kb on - strand, within MPMX20_04342at 4537.698 kb on - strand, within MPMX20_04342at 4537.720 kb on + strand, within MPMX20_04342at 4537.720 kb on + strand, within MPMX20_04342at 4537.744 kb on + strand, within MPMX20_04342at 4537.744 kb on + strand, within MPMX20_04342at 4537.801 kb on + strand, within MPMX20_04342at 4537.804 kb on - strand, within MPMX20_04342at 4537.806 kb on + strand, within MPMX20_04342at 4537.885 kb on - strand, within MPMX20_04342at 4537.944 kb on - strand, within MPMX20_04342at 4538.022 kb on + strand, within MPMX20_04342at 4538.058 kb on + strand, within MPMX20_04342at 4538.058 kb on + strand, within MPMX20_04342at 4538.058 kb on + strand, within MPMX20_04342at 4538.066 kb on - strand, within MPMX20_04342at 4538.122 kb on - strandat 4538.198 kb on - strand, within MPMX20_04343at 4538.229 kb on - strand, within MPMX20_04343at 4538.242 kb on + strand, within MPMX20_04343at 4538.242 kb on + strand, within MPMX20_04343at 4538.250 kb on - strand, within MPMX20_04343at 4538.250 kb on - strand, within MPMX20_04343at 4538.301 kb on + strand, within MPMX20_04343at 4538.301 kb on + strand, within MPMX20_04343at 4538.376 kb on - strand, within MPMX20_04343at 4538.378 kb on - strand, within MPMX20_04343at 4538.423 kb on + strandat 4538.429 kb on + strandat 4538.478 kb on - strandat 4538.478 kb on - strandat 4538.596 kb on - strand, within MPMX20_04344at 4538.663 kb on + strand, within MPMX20_04344at 4538.690 kb on - strand, within MPMX20_04344at 4538.901 kb on - strandat 4538.941 kb on - strandat 4538.987 kb on + strandat 4538.987 kb on + strandat 4538.995 kb on - strandat 4538.995 kb on - strandat 4538.995 kb on - strandat 4538.995 kb on - strandat 4538.995 kb on - strandat 4538.995 kb on - strandat 4538.995 kb on - strandat 4538.995 kb on - strandat 4538.995 kb on - strandat 4538.997 kb on + strandat 4539.084 kb on + strand, within MPMX20_04345at 4539.089 kb on + strand, within MPMX20_04345at 4539.123 kb on + strand, within MPMX20_04345at 4539.125 kb on + strand, within MPMX20_04345at 4539.147 kb on + strand, within MPMX20_04345

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Paraburkholderia pittii CO4
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4,537,483 - -0.9
4,537,483 - -0.4
4,537,562 - -0.6
4,537,570 - -2.2
4,537,630 + MPMX20_04342 0.14 +0.3
4,537,630 + MPMX20_04342 0.14 +1.6
4,537,631 + MPMX20_04342 0.14 -1.1
4,537,638 - MPMX20_04342 0.15 -0.8
4,537,638 - MPMX20_04342 0.15 +0.6
4,537,638 - MPMX20_04342 0.15 +0.2
4,537,638 - MPMX20_04342 0.15 -1.1
4,537,638 - MPMX20_04342 0.15 +3.8
4,537,638 - MPMX20_04342 0.15 +1.3
4,537,647 + MPMX20_04342 0.17 +3.4
4,537,647 + MPMX20_04342 0.17 +2.6
4,537,695 - MPMX20_04342 0.25 -0.8
4,537,698 - MPMX20_04342 0.25 +1.4
4,537,720 + MPMX20_04342 0.29 -0.7
4,537,720 + MPMX20_04342 0.29 -0.2
4,537,744 + MPMX20_04342 0.33 -1.0
4,537,744 + MPMX20_04342 0.33 -2.0
4,537,801 + MPMX20_04342 0.42 -0.6
4,537,804 - MPMX20_04342 0.43 +1.0
4,537,806 + MPMX20_04342 0.43 -2.0
4,537,885 - MPMX20_04342 0.56 -0.2
4,537,944 - MPMX20_04342 0.66 -0.0
4,538,022 + MPMX20_04342 0.79 +0.6
4,538,058 + MPMX20_04342 0.85 +1.6
4,538,058 + MPMX20_04342 0.85 +0.6
4,538,058 + MPMX20_04342 0.85 +0.4
4,538,066 - MPMX20_04342 0.86 +0.5
4,538,122 - +0.2
4,538,198 - MPMX20_04343 0.24 -0.1
4,538,229 - MPMX20_04343 0.35 +0.5
4,538,242 + MPMX20_04343 0.39 +0.6
4,538,242 + MPMX20_04343 0.39 -0.9
4,538,250 - MPMX20_04343 0.42 +2.0
4,538,250 - MPMX20_04343 0.42 +0.6
4,538,301 + MPMX20_04343 0.60 +0.6
4,538,301 + MPMX20_04343 0.60 +3.0
4,538,376 - MPMX20_04343 0.87 +2.6
4,538,378 - MPMX20_04343 0.88 -0.9
4,538,423 + -1.8
4,538,429 + +0.9
4,538,478 - +1.0
4,538,478 - -0.6
4,538,596 - MPMX20_04344 0.38 +5.5
4,538,663 + MPMX20_04344 0.56 -1.7
4,538,690 - MPMX20_04344 0.64 +2.6
4,538,901 - +0.2
4,538,941 - +0.9
4,538,987 + -1.1
4,538,987 + +0.5
4,538,995 - -1.9
4,538,995 - +1.3
4,538,995 - +1.0
4,538,995 - -3.5
4,538,995 - -1.3
4,538,995 - +0.8
4,538,995 - +1.0
4,538,995 - +1.4
4,538,995 - -2.4
4,538,997 + -0.0
4,539,084 + MPMX20_04345 0.22 -1.1
4,539,089 + MPMX20_04345 0.22 -1.0
4,539,123 + MPMX20_04345 0.28 -2.1
4,539,125 + MPMX20_04345 0.28 -0.0
4,539,147 + MPMX20_04345 0.32 -0.7

Or see this region's nucleotide sequence