Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04330

Experiment: TSB plate, 1:1 coculture with Paraburkholderia pittii CO4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04329 and MPMX20_04330 are separated by 227 nucleotidesMPMX20_04330 and MPMX20_04331 are separated by 1 nucleotidesMPMX20_04331 and MPMX20_04332 overlap by 4 nucleotides MPMX20_04329: MPMX20_04329 - sn-glycerol-3-phosphate-binding periplasmic protein UgpB, at 4,523,145 to 4,524,461 _04329 MPMX20_04330: MPMX20_04330 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 4,524,689 to 4,525,402 _04330 MPMX20_04331: MPMX20_04331 - Lipopolysaccharide export system ATP-binding protein LptB, at 4,525,404 to 4,526,171 _04331 MPMX20_04332: MPMX20_04332 - hypothetical protein, at 4,526,168 to 4,527,445 _04332 Position (kb) 4524 4525 4526Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7at 4523.774 kb on + strand, within MPMX20_04329at 4523.774 kb on + strand, within MPMX20_04329at 4523.774 kb on + strand, within MPMX20_04329at 4523.798 kb on - strand, within MPMX20_04329at 4523.881 kb on - strand, within MPMX20_04329at 4523.881 kb on - strand, within MPMX20_04329at 4523.915 kb on - strand, within MPMX20_04329at 4523.920 kb on + strand, within MPMX20_04329at 4523.927 kb on + strand, within MPMX20_04329at 4523.928 kb on - strand, within MPMX20_04329at 4523.928 kb on - strand, within MPMX20_04329at 4524.023 kb on - strand, within MPMX20_04329at 4524.141 kb on - strand, within MPMX20_04329at 4524.171 kb on - strand, within MPMX20_04329at 4524.212 kb on + strand, within MPMX20_04329at 4524.253 kb on + strand, within MPMX20_04329at 4524.265 kb on - strand, within MPMX20_04329at 4524.274 kb on + strand, within MPMX20_04329at 4524.276 kb on - strand, within MPMX20_04329at 4524.334 kb on - strandat 4524.343 kb on + strandat 4524.354 kb on + strandat 4524.375 kb on + strandat 4524.384 kb on + strandat 4524.422 kb on - strandat 4524.432 kb on + strandat 4524.432 kb on + strandat 4524.432 kb on + strandat 4524.440 kb on - strandat 4524.440 kb on - strandat 4524.440 kb on - strandat 4524.440 kb on - strandat 4524.440 kb on - strandat 4524.440 kb on - strandat 4524.478 kb on - strandat 4524.621 kb on + strandat 4524.621 kb on + strandat 4524.629 kb on - strandat 4524.629 kb on - strandat 4524.631 kb on + strandat 4524.633 kb on + strandat 4524.849 kb on + strand, within MPMX20_04330at 4524.859 kb on + strand, within MPMX20_04330at 4524.859 kb on + strand, within MPMX20_04330at 4524.864 kb on - strand, within MPMX20_04330at 4524.877 kb on - strand, within MPMX20_04330at 4524.895 kb on + strand, within MPMX20_04330at 4524.895 kb on + strand, within MPMX20_04330at 4524.895 kb on + strand, within MPMX20_04330at 4524.895 kb on + strand, within MPMX20_04330at 4524.981 kb on + strand, within MPMX20_04330at 4524.989 kb on - strand, within MPMX20_04330at 4524.989 kb on - strand, within MPMX20_04330at 4525.042 kb on - strand, within MPMX20_04330at 4525.071 kb on - strand, within MPMX20_04330at 4525.254 kb on + strand, within MPMX20_04330at 4525.254 kb on + strand, within MPMX20_04330at 4525.262 kb on - strand, within MPMX20_04330at 4525.295 kb on - strand, within MPMX20_04330at 4525.365 kb on + strandat 4525.373 kb on - strandat 4525.413 kb on + strandat 4525.418 kb on + strandat 4525.441 kb on - strandat 4525.465 kb on + strandat 4525.505 kb on + strand, within MPMX20_04331at 4525.526 kb on + strand, within MPMX20_04331at 4525.534 kb on - strand, within MPMX20_04331at 4525.558 kb on - strand, within MPMX20_04331at 4525.568 kb on - strand, within MPMX20_04331at 4525.568 kb on - strand, within MPMX20_04331at 4525.585 kb on - strand, within MPMX20_04331at 4525.601 kb on + strand, within MPMX20_04331at 4525.617 kb on + strand, within MPMX20_04331at 4525.700 kb on - strand, within MPMX20_04331at 4525.710 kb on - strand, within MPMX20_04331at 4525.735 kb on + strand, within MPMX20_04331at 4525.754 kb on + strand, within MPMX20_04331at 4525.831 kb on - strand, within MPMX20_04331at 4525.927 kb on + strand, within MPMX20_04331at 4525.932 kb on + strand, within MPMX20_04331at 4525.935 kb on - strand, within MPMX20_04331at 4525.990 kb on - strand, within MPMX20_04331at 4525.990 kb on - strand, within MPMX20_04331at 4526.166 kb on + strandat 4526.166 kb on + strandat 4526.174 kb on - strandat 4526.189 kb on - strandat 4526.209 kb on + strandat 4526.278 kb on + strandat 4526.286 kb on - strandat 4526.314 kb on + strand, within MPMX20_04332

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Paraburkholderia pittii CO4
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4,523,774 + MPMX20_04329 0.48 +0.2
4,523,774 + MPMX20_04329 0.48 +0.2
4,523,774 + MPMX20_04329 0.48 +1.6
4,523,798 - MPMX20_04329 0.50 -0.4
4,523,881 - MPMX20_04329 0.56 -0.0
4,523,881 - MPMX20_04329 0.56 -0.5
4,523,915 - MPMX20_04329 0.58 -0.3
4,523,920 + MPMX20_04329 0.59 +0.0
4,523,927 + MPMX20_04329 0.59 -0.2
4,523,928 - MPMX20_04329 0.59 -0.2
4,523,928 - MPMX20_04329 0.59 +1.6
4,524,023 - MPMX20_04329 0.67 +0.3
4,524,141 - MPMX20_04329 0.76 -0.1
4,524,171 - MPMX20_04329 0.78 +0.7
4,524,212 + MPMX20_04329 0.81 -0.6
4,524,253 + MPMX20_04329 0.84 -0.1
4,524,265 - MPMX20_04329 0.85 -1.0
4,524,274 + MPMX20_04329 0.86 -1.4
4,524,276 - MPMX20_04329 0.86 +0.0
4,524,334 - -0.1
4,524,343 + +0.6
4,524,354 + -0.4
4,524,375 + +0.3
4,524,384 + +0.6
4,524,422 - +1.2
4,524,432 + -1.0
4,524,432 + -1.8
4,524,432 + -1.1
4,524,440 - +2.3
4,524,440 - -1.9
4,524,440 - +7.7
4,524,440 - -1.8
4,524,440 - -1.9
4,524,440 - +0.2
4,524,478 - +0.9
4,524,621 + -0.0
4,524,621 + +1.1
4,524,629 - -2.1
4,524,629 - -0.1
4,524,631 + -0.2
4,524,633 + -1.8
4,524,849 + MPMX20_04330 0.22 +0.1
4,524,859 + MPMX20_04330 0.24 +1.0
4,524,859 + MPMX20_04330 0.24 +0.1
4,524,864 - MPMX20_04330 0.25 +0.6
4,524,877 - MPMX20_04330 0.26 -0.9
4,524,895 + MPMX20_04330 0.29 +1.0
4,524,895 + MPMX20_04330 0.29 -0.8
4,524,895 + MPMX20_04330 0.29 +0.6
4,524,895 + MPMX20_04330 0.29 -1.0
4,524,981 + MPMX20_04330 0.41 +0.0
4,524,989 - MPMX20_04330 0.42 +1.6
4,524,989 - MPMX20_04330 0.42 +0.5
4,525,042 - MPMX20_04330 0.49 -1.7
4,525,071 - MPMX20_04330 0.54 -1.6
4,525,254 + MPMX20_04330 0.79 -0.1
4,525,254 + MPMX20_04330 0.79 -0.9
4,525,262 - MPMX20_04330 0.80 -0.5
4,525,295 - MPMX20_04330 0.85 -2.5
4,525,365 + -2.0
4,525,373 - -1.9
4,525,413 + -0.8
4,525,418 + +0.2
4,525,441 - -1.6
4,525,465 + +1.8
4,525,505 + MPMX20_04331 0.13 +0.6
4,525,526 + MPMX20_04331 0.16 -0.2
4,525,534 - MPMX20_04331 0.17 -2.2
4,525,558 - MPMX20_04331 0.20 -0.0
4,525,568 - MPMX20_04331 0.21 -0.6
4,525,568 - MPMX20_04331 0.21 -0.5
4,525,585 - MPMX20_04331 0.24 -0.7
4,525,601 + MPMX20_04331 0.26 -0.4
4,525,617 + MPMX20_04331 0.28 -1.0
4,525,700 - MPMX20_04331 0.39 -1.2
4,525,710 - MPMX20_04331 0.40 +0.1
4,525,735 + MPMX20_04331 0.43 -0.6
4,525,754 + MPMX20_04331 0.46 +1.7
4,525,831 - MPMX20_04331 0.56 -1.8
4,525,927 + MPMX20_04331 0.68 -1.2
4,525,932 + MPMX20_04331 0.69 -1.3
4,525,935 - MPMX20_04331 0.69 +2.0
4,525,990 - MPMX20_04331 0.76 -1.2
4,525,990 - MPMX20_04331 0.76 -3.1
4,526,166 + +1.7
4,526,166 + -1.8
4,526,174 - -0.8
4,526,189 - +1.6
4,526,209 + +0.1
4,526,278 + -1.0
4,526,286 - -1.2
4,526,314 + MPMX20_04332 0.11 -0.0

Or see this region's nucleotide sequence