Experiment: TSB plate, 1:1 coculture with Paraburkholderia pittii CO4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04329 and MPMX20_04330 are separated by 227 nucleotides MPMX20_04330 and MPMX20_04331 are separated by 1 nucleotides MPMX20_04331 and MPMX20_04332 overlap by 4 nucleotides
MPMX20_04329: MPMX20_04329 - sn-glycerol-3-phosphate-binding periplasmic protein UgpB, at 4,523,145 to 4,524,461
_04329
MPMX20_04330: MPMX20_04330 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 4,524,689 to 4,525,402
_04330
MPMX20_04331: MPMX20_04331 - Lipopolysaccharide export system ATP-binding protein LptB, at 4,525,404 to 4,526,171
_04331
MPMX20_04332: MPMX20_04332 - hypothetical protein, at 4,526,168 to 4,527,445
_04332
Position (kb)
4524
4525
4526 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5
6
7 at 4523.774 kb on + strand, within MPMX20_04329 at 4523.774 kb on + strand, within MPMX20_04329 at 4523.774 kb on + strand, within MPMX20_04329 at 4523.798 kb on - strand, within MPMX20_04329 at 4523.881 kb on - strand, within MPMX20_04329 at 4523.881 kb on - strand, within MPMX20_04329 at 4523.915 kb on - strand, within MPMX20_04329 at 4523.920 kb on + strand, within MPMX20_04329 at 4523.927 kb on + strand, within MPMX20_04329 at 4523.928 kb on - strand, within MPMX20_04329 at 4523.928 kb on - strand, within MPMX20_04329 at 4524.023 kb on - strand, within MPMX20_04329 at 4524.141 kb on - strand, within MPMX20_04329 at 4524.171 kb on - strand, within MPMX20_04329 at 4524.212 kb on + strand, within MPMX20_04329 at 4524.253 kb on + strand, within MPMX20_04329 at 4524.265 kb on - strand, within MPMX20_04329 at 4524.274 kb on + strand, within MPMX20_04329 at 4524.276 kb on - strand, within MPMX20_04329 at 4524.334 kb on - strand at 4524.343 kb on + strand at 4524.354 kb on + strand at 4524.375 kb on + strand at 4524.384 kb on + strand at 4524.422 kb on - strand at 4524.432 kb on + strand at 4524.432 kb on + strand at 4524.432 kb on + strand at 4524.440 kb on - strand at 4524.440 kb on - strand at 4524.440 kb on - strand at 4524.440 kb on - strand at 4524.440 kb on - strand at 4524.440 kb on - strand at 4524.478 kb on - strand at 4524.621 kb on + strand at 4524.621 kb on + strand at 4524.629 kb on - strand at 4524.629 kb on - strand at 4524.631 kb on + strand at 4524.633 kb on + strand at 4524.849 kb on + strand, within MPMX20_04330 at 4524.859 kb on + strand, within MPMX20_04330 at 4524.859 kb on + strand, within MPMX20_04330 at 4524.864 kb on - strand, within MPMX20_04330 at 4524.877 kb on - strand, within MPMX20_04330 at 4524.895 kb on + strand, within MPMX20_04330 at 4524.895 kb on + strand, within MPMX20_04330 at 4524.895 kb on + strand, within MPMX20_04330 at 4524.895 kb on + strand, within MPMX20_04330 at 4524.981 kb on + strand, within MPMX20_04330 at 4524.989 kb on - strand, within MPMX20_04330 at 4524.989 kb on - strand, within MPMX20_04330 at 4525.042 kb on - strand, within MPMX20_04330 at 4525.071 kb on - strand, within MPMX20_04330 at 4525.254 kb on + strand, within MPMX20_04330 at 4525.254 kb on + strand, within MPMX20_04330 at 4525.262 kb on - strand, within MPMX20_04330 at 4525.295 kb on - strand, within MPMX20_04330 at 4525.365 kb on + strand at 4525.373 kb on - strand at 4525.413 kb on + strand at 4525.418 kb on + strand at 4525.441 kb on - strand at 4525.465 kb on + strand at 4525.505 kb on + strand, within MPMX20_04331 at 4525.526 kb on + strand, within MPMX20_04331 at 4525.534 kb on - strand, within MPMX20_04331 at 4525.558 kb on - strand, within MPMX20_04331 at 4525.568 kb on - strand, within MPMX20_04331 at 4525.568 kb on - strand, within MPMX20_04331 at 4525.585 kb on - strand, within MPMX20_04331 at 4525.601 kb on + strand, within MPMX20_04331 at 4525.617 kb on + strand, within MPMX20_04331 at 4525.700 kb on - strand, within MPMX20_04331 at 4525.710 kb on - strand, within MPMX20_04331 at 4525.735 kb on + strand, within MPMX20_04331 at 4525.754 kb on + strand, within MPMX20_04331 at 4525.831 kb on - strand, within MPMX20_04331 at 4525.927 kb on + strand, within MPMX20_04331 at 4525.932 kb on + strand, within MPMX20_04331 at 4525.935 kb on - strand, within MPMX20_04331 at 4525.990 kb on - strand, within MPMX20_04331 at 4525.990 kb on - strand, within MPMX20_04331 at 4526.166 kb on + strand at 4526.166 kb on + strand at 4526.174 kb on - strand at 4526.189 kb on - strand at 4526.209 kb on + strand at 4526.278 kb on + strand at 4526.286 kb on - strand at 4526.314 kb on + strand, within MPMX20_04332
Per-strain Table
Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Paraburkholderia pittii CO4 remove 4,523,774 + MPMX20_04329 0.48 +0.2 4,523,774 + MPMX20_04329 0.48 +0.2 4,523,774 + MPMX20_04329 0.48 +1.6 4,523,798 - MPMX20_04329 0.50 -0.4 4,523,881 - MPMX20_04329 0.56 -0.0 4,523,881 - MPMX20_04329 0.56 -0.5 4,523,915 - MPMX20_04329 0.58 -0.3 4,523,920 + MPMX20_04329 0.59 +0.0 4,523,927 + MPMX20_04329 0.59 -0.2 4,523,928 - MPMX20_04329 0.59 -0.2 4,523,928 - MPMX20_04329 0.59 +1.6 4,524,023 - MPMX20_04329 0.67 +0.3 4,524,141 - MPMX20_04329 0.76 -0.1 4,524,171 - MPMX20_04329 0.78 +0.7 4,524,212 + MPMX20_04329 0.81 -0.6 4,524,253 + MPMX20_04329 0.84 -0.1 4,524,265 - MPMX20_04329 0.85 -1.0 4,524,274 + MPMX20_04329 0.86 -1.4 4,524,276 - MPMX20_04329 0.86 +0.0 4,524,334 - -0.1 4,524,343 + +0.6 4,524,354 + -0.4 4,524,375 + +0.3 4,524,384 + +0.6 4,524,422 - +1.2 4,524,432 + -1.0 4,524,432 + -1.8 4,524,432 + -1.1 4,524,440 - +2.3 4,524,440 - -1.9 4,524,440 - +7.7 4,524,440 - -1.8 4,524,440 - -1.9 4,524,440 - +0.2 4,524,478 - +0.9 4,524,621 + -0.0 4,524,621 + +1.1 4,524,629 - -2.1 4,524,629 - -0.1 4,524,631 + -0.2 4,524,633 + -1.8 4,524,849 + MPMX20_04330 0.22 +0.1 4,524,859 + MPMX20_04330 0.24 +1.0 4,524,859 + MPMX20_04330 0.24 +0.1 4,524,864 - MPMX20_04330 0.25 +0.6 4,524,877 - MPMX20_04330 0.26 -0.9 4,524,895 + MPMX20_04330 0.29 +1.0 4,524,895 + MPMX20_04330 0.29 -0.8 4,524,895 + MPMX20_04330 0.29 +0.6 4,524,895 + MPMX20_04330 0.29 -1.0 4,524,981 + MPMX20_04330 0.41 +0.0 4,524,989 - MPMX20_04330 0.42 +1.6 4,524,989 - MPMX20_04330 0.42 +0.5 4,525,042 - MPMX20_04330 0.49 -1.7 4,525,071 - MPMX20_04330 0.54 -1.6 4,525,254 + MPMX20_04330 0.79 -0.1 4,525,254 + MPMX20_04330 0.79 -0.9 4,525,262 - MPMX20_04330 0.80 -0.5 4,525,295 - MPMX20_04330 0.85 -2.5 4,525,365 + -2.0 4,525,373 - -1.9 4,525,413 + -0.8 4,525,418 + +0.2 4,525,441 - -1.6 4,525,465 + +1.8 4,525,505 + MPMX20_04331 0.13 +0.6 4,525,526 + MPMX20_04331 0.16 -0.2 4,525,534 - MPMX20_04331 0.17 -2.2 4,525,558 - MPMX20_04331 0.20 -0.0 4,525,568 - MPMX20_04331 0.21 -0.6 4,525,568 - MPMX20_04331 0.21 -0.5 4,525,585 - MPMX20_04331 0.24 -0.7 4,525,601 + MPMX20_04331 0.26 -0.4 4,525,617 + MPMX20_04331 0.28 -1.0 4,525,700 - MPMX20_04331 0.39 -1.2 4,525,710 - MPMX20_04331 0.40 +0.1 4,525,735 + MPMX20_04331 0.43 -0.6 4,525,754 + MPMX20_04331 0.46 +1.7 4,525,831 - MPMX20_04331 0.56 -1.8 4,525,927 + MPMX20_04331 0.68 -1.2 4,525,932 + MPMX20_04331 0.69 -1.3 4,525,935 - MPMX20_04331 0.69 +2.0 4,525,990 - MPMX20_04331 0.76 -1.2 4,525,990 - MPMX20_04331 0.76 -3.1 4,526,166 + +1.7 4,526,166 + -1.8 4,526,174 - -0.8 4,526,189 - +1.6 4,526,209 + +0.1 4,526,278 + -1.0 4,526,286 - -1.2 4,526,314 + MPMX20_04332 0.11 -0.0
Or see this region's nucleotide sequence