Experiment: TSB plate, 1:1 coculture with Paraburkholderia pittii CO4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01844 and MPMX20_01845 are separated by 341 nucleotides MPMX20_01845 and MPMX20_01846 are separated by 41 nucleotides MPMX20_01846 and MPMX20_01847 are separated by 55 nucleotides
MPMX20_01844: MPMX20_01844 - Glyceraldehyde-3-phosphate dehydrogenase A, at 1,937,856 to 1,938,851
_01844
MPMX20_01845: MPMX20_01845 - Peptide methionine sulfoxide reductase MsrB, at 1,939,193 to 1,939,606
_01845
MPMX20_01846: MPMX20_01846 - hypothetical protein, at 1,939,648 to 1,939,926
_01846
MPMX20_01847: MPMX20_01847 - Chitinase A1, at 1,939,982 to 1,941,241
_01847
Position (kb)
1939
1940 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 1939.014 kb on + strand at 1939.014 kb on + strand at 1939.014 kb on + strand at 1939.014 kb on + strand at 1939.022 kb on - strand at 1939.105 kb on - strand at 1939.199 kb on + strand at 1939.203 kb on + strand at 1939.212 kb on - strand at 1939.212 kb on - strand at 1939.254 kb on - strand, within MPMX20_01845 at 1939.317 kb on + strand, within MPMX20_01845 at 1939.319 kb on + strand, within MPMX20_01845 at 1939.319 kb on + strand, within MPMX20_01845 at 1939.319 kb on + strand, within MPMX20_01845 at 1939.319 kb on + strand, within MPMX20_01845 at 1939.327 kb on - strand, within MPMX20_01845 at 1939.327 kb on - strand, within MPMX20_01845 at 1939.346 kb on + strand, within MPMX20_01845 at 1939.395 kb on + strand, within MPMX20_01845 at 1939.398 kb on + strand, within MPMX20_01845 at 1939.518 kb on + strand, within MPMX20_01845 at 1939.679 kb on + strand, within MPMX20_01846 at 1939.679 kb on + strand, within MPMX20_01846 at 1939.717 kb on - strand, within MPMX20_01846 at 1939.759 kb on + strand, within MPMX20_01846 at 1939.835 kb on + strand, within MPMX20_01846 at 1939.849 kb on + strand, within MPMX20_01846 at 1939.927 kb on + strand at 1940.032 kb on + strand at 1940.049 kb on + strand at 1940.279 kb on + strand, within MPMX20_01847 at 1940.284 kb on + strand, within MPMX20_01847 at 1940.284 kb on + strand, within MPMX20_01847 at 1940.292 kb on - strand, within MPMX20_01847 at 1940.292 kb on - strand, within MPMX20_01847 at 1940.323 kb on + strand, within MPMX20_01847 at 1940.331 kb on - strand, within MPMX20_01847 at 1940.331 kb on - strand, within MPMX20_01847 at 1940.454 kb on - strand, within MPMX20_01847 at 1940.492 kb on + strand, within MPMX20_01847 at 1940.492 kb on + strand, within MPMX20_01847 at 1940.492 kb on + strand, within MPMX20_01847 at 1940.500 kb on - strand, within MPMX20_01847 at 1940.500 kb on - strand, within MPMX20_01847 at 1940.500 kb on - strand, within MPMX20_01847 at 1940.500 kb on - strand, within MPMX20_01847 at 1940.500 kb on - strand, within MPMX20_01847 at 1940.520 kb on - strand, within MPMX20_01847 at 1940.573 kb on + strand, within MPMX20_01847 at 1940.591 kb on + strand, within MPMX20_01847 at 1940.658 kb on - strand, within MPMX20_01847 at 1940.670 kb on - strand, within MPMX20_01847 at 1940.687 kb on + strand, within MPMX20_01847 at 1940.714 kb on - strand, within MPMX20_01847 at 1940.714 kb on - strand, within MPMX20_01847 at 1940.758 kb on - strand, within MPMX20_01847 at 1940.828 kb on + strand, within MPMX20_01847 at 1940.828 kb on + strand, within MPMX20_01847 at 1940.828 kb on + strand, within MPMX20_01847 at 1940.828 kb on + strand, within MPMX20_01847 at 1940.836 kb on - strand, within MPMX20_01847 at 1940.858 kb on + strand, within MPMX20_01847 at 1940.866 kb on - strand, within MPMX20_01847 at 1940.867 kb on + strand, within MPMX20_01847
Per-strain Table
Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Paraburkholderia pittii CO4 remove 1,939,014 + +0.1 1,939,014 + -0.8 1,939,014 + -2.8 1,939,014 + +0.2 1,939,022 - +3.2 1,939,105 - +0.5 1,939,199 + +3.9 1,939,203 + +0.8 1,939,212 - -0.1 1,939,212 - -2.2 1,939,254 - MPMX20_01845 0.15 -0.9 1,939,317 + MPMX20_01845 0.30 -0.8 1,939,319 + MPMX20_01845 0.30 -0.1 1,939,319 + MPMX20_01845 0.30 -0.1 1,939,319 + MPMX20_01845 0.30 +0.5 1,939,319 + MPMX20_01845 0.30 +1.7 1,939,327 - MPMX20_01845 0.32 -0.0 1,939,327 - MPMX20_01845 0.32 -0.8 1,939,346 + MPMX20_01845 0.37 +1.1 1,939,395 + MPMX20_01845 0.49 -1.0 1,939,398 + MPMX20_01845 0.50 +0.2 1,939,518 + MPMX20_01845 0.79 +0.1 1,939,679 + MPMX20_01846 0.11 +0.5 1,939,679 + MPMX20_01846 0.11 -1.3 1,939,717 - MPMX20_01846 0.25 +0.5 1,939,759 + MPMX20_01846 0.40 -0.3 1,939,835 + MPMX20_01846 0.67 +0.4 1,939,849 + MPMX20_01846 0.72 -1.7 1,939,927 + +0.6 1,940,032 + +0.3 1,940,049 + -1.1 1,940,279 + MPMX20_01847 0.24 -1.1 1,940,284 + MPMX20_01847 0.24 -1.2 1,940,284 + MPMX20_01847 0.24 -0.1 1,940,292 - MPMX20_01847 0.25 -1.1 1,940,292 - MPMX20_01847 0.25 +3.4 1,940,323 + MPMX20_01847 0.27 -1.8 1,940,331 - MPMX20_01847 0.28 +0.2 1,940,331 - MPMX20_01847 0.28 +0.1 1,940,454 - MPMX20_01847 0.37 -2.2 1,940,492 + MPMX20_01847 0.40 +1.1 1,940,492 + MPMX20_01847 0.40 +0.2 1,940,492 + MPMX20_01847 0.40 -0.4 1,940,500 - MPMX20_01847 0.41 +2.9 1,940,500 - MPMX20_01847 0.41 -1.8 1,940,500 - MPMX20_01847 0.41 +0.1 1,940,500 - MPMX20_01847 0.41 +1.8 1,940,500 - MPMX20_01847 0.41 +0.9 1,940,520 - MPMX20_01847 0.43 +2.2 1,940,573 + MPMX20_01847 0.47 -0.1 1,940,591 + MPMX20_01847 0.48 +0.2 1,940,658 - MPMX20_01847 0.54 +1.1 1,940,670 - MPMX20_01847 0.55 +0.8 1,940,687 + MPMX20_01847 0.56 -0.4 1,940,714 - MPMX20_01847 0.58 -0.2 1,940,714 - MPMX20_01847 0.58 +1.6 1,940,758 - MPMX20_01847 0.62 -1.1 1,940,828 + MPMX20_01847 0.67 -0.1 1,940,828 + MPMX20_01847 0.67 +2.5 1,940,828 + MPMX20_01847 0.67 +2.2 1,940,828 + MPMX20_01847 0.67 -0.5 1,940,836 - MPMX20_01847 0.68 -0.9 1,940,858 + MPMX20_01847 0.70 -1.1 1,940,866 - MPMX20_01847 0.70 +1.9 1,940,867 + MPMX20_01847 0.70 +2.0
Or see this region's nucleotide sequence