Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01846

Experiment: TSB plate, 1:1 coculture with Paraburkholderia pittii CO4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01844 and MPMX20_01845 are separated by 341 nucleotidesMPMX20_01845 and MPMX20_01846 are separated by 41 nucleotidesMPMX20_01846 and MPMX20_01847 are separated by 55 nucleotides MPMX20_01844: MPMX20_01844 - Glyceraldehyde-3-phosphate dehydrogenase A, at 1,937,856 to 1,938,851 _01844 MPMX20_01845: MPMX20_01845 - Peptide methionine sulfoxide reductase MsrB, at 1,939,193 to 1,939,606 _01845 MPMX20_01846: MPMX20_01846 - hypothetical protein, at 1,939,648 to 1,939,926 _01846 MPMX20_01847: MPMX20_01847 - Chitinase A1, at 1,939,982 to 1,941,241 _01847 Position (kb) 1939 1940Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1939.014 kb on + strandat 1939.014 kb on + strandat 1939.014 kb on + strandat 1939.014 kb on + strandat 1939.022 kb on - strandat 1939.105 kb on - strandat 1939.199 kb on + strandat 1939.203 kb on + strandat 1939.212 kb on - strandat 1939.212 kb on - strandat 1939.254 kb on - strand, within MPMX20_01845at 1939.317 kb on + strand, within MPMX20_01845at 1939.319 kb on + strand, within MPMX20_01845at 1939.319 kb on + strand, within MPMX20_01845at 1939.319 kb on + strand, within MPMX20_01845at 1939.319 kb on + strand, within MPMX20_01845at 1939.327 kb on - strand, within MPMX20_01845at 1939.327 kb on - strand, within MPMX20_01845at 1939.346 kb on + strand, within MPMX20_01845at 1939.395 kb on + strand, within MPMX20_01845at 1939.398 kb on + strand, within MPMX20_01845at 1939.518 kb on + strand, within MPMX20_01845at 1939.679 kb on + strand, within MPMX20_01846at 1939.679 kb on + strand, within MPMX20_01846at 1939.717 kb on - strand, within MPMX20_01846at 1939.759 kb on + strand, within MPMX20_01846at 1939.835 kb on + strand, within MPMX20_01846at 1939.849 kb on + strand, within MPMX20_01846at 1939.927 kb on + strandat 1940.032 kb on + strandat 1940.049 kb on + strandat 1940.279 kb on + strand, within MPMX20_01847at 1940.284 kb on + strand, within MPMX20_01847at 1940.284 kb on + strand, within MPMX20_01847at 1940.292 kb on - strand, within MPMX20_01847at 1940.292 kb on - strand, within MPMX20_01847at 1940.323 kb on + strand, within MPMX20_01847at 1940.331 kb on - strand, within MPMX20_01847at 1940.331 kb on - strand, within MPMX20_01847at 1940.454 kb on - strand, within MPMX20_01847at 1940.492 kb on + strand, within MPMX20_01847at 1940.492 kb on + strand, within MPMX20_01847at 1940.492 kb on + strand, within MPMX20_01847at 1940.500 kb on - strand, within MPMX20_01847at 1940.500 kb on - strand, within MPMX20_01847at 1940.500 kb on - strand, within MPMX20_01847at 1940.500 kb on - strand, within MPMX20_01847at 1940.500 kb on - strand, within MPMX20_01847at 1940.520 kb on - strand, within MPMX20_01847at 1940.573 kb on + strand, within MPMX20_01847at 1940.591 kb on + strand, within MPMX20_01847at 1940.658 kb on - strand, within MPMX20_01847at 1940.670 kb on - strand, within MPMX20_01847at 1940.687 kb on + strand, within MPMX20_01847at 1940.714 kb on - strand, within MPMX20_01847at 1940.714 kb on - strand, within MPMX20_01847at 1940.758 kb on - strand, within MPMX20_01847at 1940.828 kb on + strand, within MPMX20_01847at 1940.828 kb on + strand, within MPMX20_01847at 1940.828 kb on + strand, within MPMX20_01847at 1940.828 kb on + strand, within MPMX20_01847at 1940.836 kb on - strand, within MPMX20_01847at 1940.858 kb on + strand, within MPMX20_01847at 1940.866 kb on - strand, within MPMX20_01847at 1940.867 kb on + strand, within MPMX20_01847

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Paraburkholderia pittii CO4
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1,939,014 + +0.1
1,939,014 + -0.8
1,939,014 + -2.8
1,939,014 + +0.2
1,939,022 - +3.2
1,939,105 - +0.5
1,939,199 + +3.9
1,939,203 + +0.8
1,939,212 - -0.1
1,939,212 - -2.2
1,939,254 - MPMX20_01845 0.15 -0.9
1,939,317 + MPMX20_01845 0.30 -0.8
1,939,319 + MPMX20_01845 0.30 -0.1
1,939,319 + MPMX20_01845 0.30 -0.1
1,939,319 + MPMX20_01845 0.30 +0.5
1,939,319 + MPMX20_01845 0.30 +1.7
1,939,327 - MPMX20_01845 0.32 -0.0
1,939,327 - MPMX20_01845 0.32 -0.8
1,939,346 + MPMX20_01845 0.37 +1.1
1,939,395 + MPMX20_01845 0.49 -1.0
1,939,398 + MPMX20_01845 0.50 +0.2
1,939,518 + MPMX20_01845 0.79 +0.1
1,939,679 + MPMX20_01846 0.11 +0.5
1,939,679 + MPMX20_01846 0.11 -1.3
1,939,717 - MPMX20_01846 0.25 +0.5
1,939,759 + MPMX20_01846 0.40 -0.3
1,939,835 + MPMX20_01846 0.67 +0.4
1,939,849 + MPMX20_01846 0.72 -1.7
1,939,927 + +0.6
1,940,032 + +0.3
1,940,049 + -1.1
1,940,279 + MPMX20_01847 0.24 -1.1
1,940,284 + MPMX20_01847 0.24 -1.2
1,940,284 + MPMX20_01847 0.24 -0.1
1,940,292 - MPMX20_01847 0.25 -1.1
1,940,292 - MPMX20_01847 0.25 +3.4
1,940,323 + MPMX20_01847 0.27 -1.8
1,940,331 - MPMX20_01847 0.28 +0.2
1,940,331 - MPMX20_01847 0.28 +0.1
1,940,454 - MPMX20_01847 0.37 -2.2
1,940,492 + MPMX20_01847 0.40 +1.1
1,940,492 + MPMX20_01847 0.40 +0.2
1,940,492 + MPMX20_01847 0.40 -0.4
1,940,500 - MPMX20_01847 0.41 +2.9
1,940,500 - MPMX20_01847 0.41 -1.8
1,940,500 - MPMX20_01847 0.41 +0.1
1,940,500 - MPMX20_01847 0.41 +1.8
1,940,500 - MPMX20_01847 0.41 +0.9
1,940,520 - MPMX20_01847 0.43 +2.2
1,940,573 + MPMX20_01847 0.47 -0.1
1,940,591 + MPMX20_01847 0.48 +0.2
1,940,658 - MPMX20_01847 0.54 +1.1
1,940,670 - MPMX20_01847 0.55 +0.8
1,940,687 + MPMX20_01847 0.56 -0.4
1,940,714 - MPMX20_01847 0.58 -0.2
1,940,714 - MPMX20_01847 0.58 +1.6
1,940,758 - MPMX20_01847 0.62 -1.1
1,940,828 + MPMX20_01847 0.67 -0.1
1,940,828 + MPMX20_01847 0.67 +2.5
1,940,828 + MPMX20_01847 0.67 +2.2
1,940,828 + MPMX20_01847 0.67 -0.5
1,940,836 - MPMX20_01847 0.68 -0.9
1,940,858 + MPMX20_01847 0.70 -1.1
1,940,866 - MPMX20_01847 0.70 +1.9
1,940,867 + MPMX20_01847 0.70 +2.0

Or see this region's nucleotide sequence