Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01477

Experiment: TSB plate, 1:1 coculture with Paraburkholderia pittii CO4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01475 and MPMX20_01476 are separated by 0 nucleotidesMPMX20_01476 and MPMX20_01477 are separated by 256 nucleotidesMPMX20_01477 and MPMX20_01478 are separated by 52 nucleotidesMPMX20_01478 and MPMX20_01479 are separated by 67 nucleotides MPMX20_01475: MPMX20_01475 - Aldose sugar dehydrogenase YliI, at 1,546,076 to 1,547,194 _01475 MPMX20_01476: MPMX20_01476 - Glutathione S-transferase GstB, at 1,547,195 to 1,547,821 _01476 MPMX20_01477: MPMX20_01477 - D-alanyl-D-alanine carboxypeptidase DacC, at 1,548,078 to 1,549,283 _01477 MPMX20_01478: MPMX20_01478 - Deoxyribose operon repressor, at 1,549,336 to 1,550,094 _01478 MPMX20_01479: MPMX20_01479 - Putative undecaprenyl-diphosphatase YbjG, at 1,550,162 to 1,550,770 _01479 Position (kb) 1548 1549 1550Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1547.085 kb on + strandat 1547.093 kb on - strandat 1547.108 kb on + strandat 1547.290 kb on + strand, within MPMX20_01476at 1547.298 kb on - strand, within MPMX20_01476at 1547.298 kb on - strand, within MPMX20_01476at 1547.320 kb on - strand, within MPMX20_01476at 1547.350 kb on - strand, within MPMX20_01476at 1547.417 kb on + strand, within MPMX20_01476at 1547.417 kb on + strand, within MPMX20_01476at 1547.417 kb on + strand, within MPMX20_01476at 1547.417 kb on + strand, within MPMX20_01476at 1547.417 kb on + strand, within MPMX20_01476at 1547.417 kb on + strand, within MPMX20_01476at 1547.417 kb on + strand, within MPMX20_01476at 1547.425 kb on - strand, within MPMX20_01476at 1547.425 kb on - strand, within MPMX20_01476at 1547.425 kb on - strand, within MPMX20_01476at 1547.425 kb on - strand, within MPMX20_01476at 1547.425 kb on - strand, within MPMX20_01476at 1547.425 kb on - strand, within MPMX20_01476at 1547.425 kb on - strand, within MPMX20_01476at 1547.462 kb on - strand, within MPMX20_01476at 1547.502 kb on - strand, within MPMX20_01476at 1547.520 kb on - strand, within MPMX20_01476at 1547.538 kb on + strand, within MPMX20_01476at 1547.584 kb on - strand, within MPMX20_01476at 1547.598 kb on + strand, within MPMX20_01476at 1547.606 kb on - strand, within MPMX20_01476at 1547.621 kb on - strand, within MPMX20_01476at 1547.621 kb on - strand, within MPMX20_01476at 1547.629 kb on + strand, within MPMX20_01476at 1547.727 kb on + strand, within MPMX20_01476at 1547.727 kb on + strand, within MPMX20_01476at 1547.750 kb on + strand, within MPMX20_01476at 1547.939 kb on - strandat 1548.015 kb on - strandat 1548.022 kb on - strandat 1548.041 kb on - strandat 1548.068 kb on + strandat 1548.106 kb on + strandat 1548.106 kb on + strandat 1548.114 kb on - strandat 1548.114 kb on - strandat 1548.114 kb on - strandat 1548.210 kb on - strand, within MPMX20_01477at 1548.279 kb on - strand, within MPMX20_01477at 1548.298 kb on + strand, within MPMX20_01477at 1548.298 kb on + strand, within MPMX20_01477at 1548.298 kb on + strand, within MPMX20_01477at 1548.306 kb on - strand, within MPMX20_01477at 1548.306 kb on - strand, within MPMX20_01477at 1548.393 kb on - strand, within MPMX20_01477at 1548.498 kb on - strand, within MPMX20_01477at 1548.584 kb on + strand, within MPMX20_01477at 1548.601 kb on + strand, within MPMX20_01477at 1548.609 kb on - strand, within MPMX20_01477at 1548.609 kb on - strand, within MPMX20_01477at 1548.609 kb on - strand, within MPMX20_01477at 1548.620 kb on + strand, within MPMX20_01477at 1548.620 kb on + strand, within MPMX20_01477at 1548.620 kb on + strand, within MPMX20_01477at 1548.620 kb on + strand, within MPMX20_01477at 1548.628 kb on - strand, within MPMX20_01477at 1548.628 kb on - strand, within MPMX20_01477at 1548.645 kb on - strand, within MPMX20_01477at 1548.662 kb on + strand, within MPMX20_01477at 1548.757 kb on - strand, within MPMX20_01477at 1548.807 kb on + strand, within MPMX20_01477at 1548.914 kb on + strand, within MPMX20_01477at 1549.078 kb on + strand, within MPMX20_01477at 1549.084 kb on + strand, within MPMX20_01477at 1549.086 kb on - strand, within MPMX20_01477at 1549.122 kb on + strand, within MPMX20_01477at 1549.206 kb on - strandat 1549.206 kb on - strandat 1549.315 kb on + strandat 1549.323 kb on - strandat 1549.380 kb on - strandat 1549.380 kb on - strandat 1549.476 kb on - strand, within MPMX20_01478at 1549.482 kb on + strand, within MPMX20_01478at 1549.489 kb on + strand, within MPMX20_01478at 1549.513 kb on + strand, within MPMX20_01478at 1549.513 kb on + strand, within MPMX20_01478at 1549.513 kb on + strand, within MPMX20_01478at 1549.520 kb on + strand, within MPMX20_01478at 1549.573 kb on - strand, within MPMX20_01478at 1549.635 kb on + strand, within MPMX20_01478at 1549.775 kb on + strand, within MPMX20_01478at 1549.942 kb on - strand, within MPMX20_01478at 1549.974 kb on - strand, within MPMX20_01478at 1550.054 kb on + strandat 1550.171 kb on + strandat 1550.179 kb on - strandat 1550.214 kb on + strandat 1550.239 kb on - strand, within MPMX20_01479at 1550.244 kb on - strand, within MPMX20_01479at 1550.273 kb on + strand, within MPMX20_01479

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Paraburkholderia pittii CO4
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1,547,085 + -0.4
1,547,093 - -3.1
1,547,108 + -0.2
1,547,290 + MPMX20_01476 0.15 -0.8
1,547,298 - MPMX20_01476 0.16 -2.4
1,547,298 - MPMX20_01476 0.16 -1.6
1,547,320 - MPMX20_01476 0.20 -2.8
1,547,350 - MPMX20_01476 0.25 +1.8
1,547,417 + MPMX20_01476 0.35 -0.4
1,547,417 + MPMX20_01476 0.35 -0.1
1,547,417 + MPMX20_01476 0.35 -1.8
1,547,417 + MPMX20_01476 0.35 -0.2
1,547,417 + MPMX20_01476 0.35 +0.5
1,547,417 + MPMX20_01476 0.35 +1.1
1,547,417 + MPMX20_01476 0.35 +0.1
1,547,425 - MPMX20_01476 0.37 +0.1
1,547,425 - MPMX20_01476 0.37 +1.5
1,547,425 - MPMX20_01476 0.37 -2.0
1,547,425 - MPMX20_01476 0.37 +0.5
1,547,425 - MPMX20_01476 0.37 -1.2
1,547,425 - MPMX20_01476 0.37 +0.7
1,547,425 - MPMX20_01476 0.37 +0.2
1,547,462 - MPMX20_01476 0.43 +1.0
1,547,502 - MPMX20_01476 0.49 -1.9
1,547,520 - MPMX20_01476 0.52 -1.5
1,547,538 + MPMX20_01476 0.55 -0.6
1,547,584 - MPMX20_01476 0.62 -1.6
1,547,598 + MPMX20_01476 0.64 +0.1
1,547,606 - MPMX20_01476 0.66 -0.3
1,547,621 - MPMX20_01476 0.68 +1.4
1,547,621 - MPMX20_01476 0.68 -0.7
1,547,629 + MPMX20_01476 0.69 -2.2
1,547,727 + MPMX20_01476 0.85 +0.5
1,547,727 + MPMX20_01476 0.85 +2.5
1,547,750 + MPMX20_01476 0.89 +1.5
1,547,939 - -1.5
1,548,015 - +1.0
1,548,022 - -0.3
1,548,041 - +0.2
1,548,068 + +0.6
1,548,106 + -0.6
1,548,106 + -0.2
1,548,114 - +1.1
1,548,114 - +1.0
1,548,114 - -1.9
1,548,210 - MPMX20_01477 0.11 +1.6
1,548,279 - MPMX20_01477 0.17 +2.3
1,548,298 + MPMX20_01477 0.18 +0.4
1,548,298 + MPMX20_01477 0.18 -0.1
1,548,298 + MPMX20_01477 0.18 -2.2
1,548,306 - MPMX20_01477 0.19 -0.0
1,548,306 - MPMX20_01477 0.19 +0.3
1,548,393 - MPMX20_01477 0.26 +2.1
1,548,498 - MPMX20_01477 0.35 -0.8
1,548,584 + MPMX20_01477 0.42 -1.6
1,548,601 + MPMX20_01477 0.43 +0.5
1,548,609 - MPMX20_01477 0.44 -1.1
1,548,609 - MPMX20_01477 0.44 +0.2
1,548,609 - MPMX20_01477 0.44 -1.1
1,548,620 + MPMX20_01477 0.45 -1.7
1,548,620 + MPMX20_01477 0.45 -0.2
1,548,620 + MPMX20_01477 0.45 -0.2
1,548,620 + MPMX20_01477 0.45 +0.5
1,548,628 - MPMX20_01477 0.46 -0.4
1,548,628 - MPMX20_01477 0.46 -1.6
1,548,645 - MPMX20_01477 0.47 +1.4
1,548,662 + MPMX20_01477 0.48 +0.4
1,548,757 - MPMX20_01477 0.56 -1.5
1,548,807 + MPMX20_01477 0.60 +0.3
1,548,914 + MPMX20_01477 0.69 +0.2
1,549,078 + MPMX20_01477 0.83 +0.5
1,549,084 + MPMX20_01477 0.83 -0.5
1,549,086 - MPMX20_01477 0.84 -0.4
1,549,122 + MPMX20_01477 0.87 +0.3
1,549,206 - -0.4
1,549,206 - +0.1
1,549,315 + -1.6
1,549,323 - -0.5
1,549,380 - -1.6
1,549,380 - -1.2
1,549,476 - MPMX20_01478 0.18 -0.8
1,549,482 + MPMX20_01478 0.19 -0.8
1,549,489 + MPMX20_01478 0.20 -0.1
1,549,513 + MPMX20_01478 0.23 -1.2
1,549,513 + MPMX20_01478 0.23 -0.5
1,549,513 + MPMX20_01478 0.23 -1.1
1,549,520 + MPMX20_01478 0.24 -1.7
1,549,573 - MPMX20_01478 0.31 +0.2
1,549,635 + MPMX20_01478 0.39 -0.5
1,549,775 + MPMX20_01478 0.58 -0.7
1,549,942 - MPMX20_01478 0.80 -0.7
1,549,974 - MPMX20_01478 0.84 -1.4
1,550,054 + -0.1
1,550,171 + -1.9
1,550,179 - -0.5
1,550,214 + +1.6
1,550,239 - MPMX20_01479 0.13 +0.4
1,550,244 - MPMX20_01479 0.13 -0.5
1,550,273 + MPMX20_01479 0.18 -0.3

Or see this region's nucleotide sequence