Experiment: TSB plate, 1:1 coculture with Paraburkholderia pittii CO4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01475 and MPMX20_01476 are separated by 0 nucleotides MPMX20_01476 and MPMX20_01477 are separated by 256 nucleotides MPMX20_01477 and MPMX20_01478 are separated by 52 nucleotides MPMX20_01478 and MPMX20_01479 are separated by 67 nucleotides
MPMX20_01475: MPMX20_01475 - Aldose sugar dehydrogenase YliI, at 1,546,076 to 1,547,194
_01475
MPMX20_01476: MPMX20_01476 - Glutathione S-transferase GstB, at 1,547,195 to 1,547,821
_01476
MPMX20_01477: MPMX20_01477 - D-alanyl-D-alanine carboxypeptidase DacC, at 1,548,078 to 1,549,283
_01477
MPMX20_01478: MPMX20_01478 - Deoxyribose operon repressor, at 1,549,336 to 1,550,094
_01478
MPMX20_01479: MPMX20_01479 - Putative undecaprenyl-diphosphatase YbjG, at 1,550,162 to 1,550,770
_01479
Position (kb)
1548
1549
1550 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1547.085 kb on + strand at 1547.093 kb on - strand at 1547.108 kb on + strand at 1547.290 kb on + strand, within MPMX20_01476 at 1547.298 kb on - strand, within MPMX20_01476 at 1547.298 kb on - strand, within MPMX20_01476 at 1547.320 kb on - strand, within MPMX20_01476 at 1547.350 kb on - strand, within MPMX20_01476 at 1547.417 kb on + strand, within MPMX20_01476 at 1547.417 kb on + strand, within MPMX20_01476 at 1547.417 kb on + strand, within MPMX20_01476 at 1547.417 kb on + strand, within MPMX20_01476 at 1547.417 kb on + strand, within MPMX20_01476 at 1547.417 kb on + strand, within MPMX20_01476 at 1547.417 kb on + strand, within MPMX20_01476 at 1547.425 kb on - strand, within MPMX20_01476 at 1547.425 kb on - strand, within MPMX20_01476 at 1547.425 kb on - strand, within MPMX20_01476 at 1547.425 kb on - strand, within MPMX20_01476 at 1547.425 kb on - strand, within MPMX20_01476 at 1547.425 kb on - strand, within MPMX20_01476 at 1547.425 kb on - strand, within MPMX20_01476 at 1547.462 kb on - strand, within MPMX20_01476 at 1547.502 kb on - strand, within MPMX20_01476 at 1547.520 kb on - strand, within MPMX20_01476 at 1547.538 kb on + strand, within MPMX20_01476 at 1547.584 kb on - strand, within MPMX20_01476 at 1547.598 kb on + strand, within MPMX20_01476 at 1547.606 kb on - strand, within MPMX20_01476 at 1547.621 kb on - strand, within MPMX20_01476 at 1547.621 kb on - strand, within MPMX20_01476 at 1547.629 kb on + strand, within MPMX20_01476 at 1547.727 kb on + strand, within MPMX20_01476 at 1547.727 kb on + strand, within MPMX20_01476 at 1547.750 kb on + strand, within MPMX20_01476 at 1547.939 kb on - strand at 1548.015 kb on - strand at 1548.022 kb on - strand at 1548.041 kb on - strand at 1548.068 kb on + strand at 1548.106 kb on + strand at 1548.106 kb on + strand at 1548.114 kb on - strand at 1548.114 kb on - strand at 1548.114 kb on - strand at 1548.210 kb on - strand, within MPMX20_01477 at 1548.279 kb on - strand, within MPMX20_01477 at 1548.298 kb on + strand, within MPMX20_01477 at 1548.298 kb on + strand, within MPMX20_01477 at 1548.298 kb on + strand, within MPMX20_01477 at 1548.306 kb on - strand, within MPMX20_01477 at 1548.306 kb on - strand, within MPMX20_01477 at 1548.393 kb on - strand, within MPMX20_01477 at 1548.498 kb on - strand, within MPMX20_01477 at 1548.584 kb on + strand, within MPMX20_01477 at 1548.601 kb on + strand, within MPMX20_01477 at 1548.609 kb on - strand, within MPMX20_01477 at 1548.609 kb on - strand, within MPMX20_01477 at 1548.609 kb on - strand, within MPMX20_01477 at 1548.620 kb on + strand, within MPMX20_01477 at 1548.620 kb on + strand, within MPMX20_01477 at 1548.620 kb on + strand, within MPMX20_01477 at 1548.620 kb on + strand, within MPMX20_01477 at 1548.628 kb on - strand, within MPMX20_01477 at 1548.628 kb on - strand, within MPMX20_01477 at 1548.645 kb on - strand, within MPMX20_01477 at 1548.662 kb on + strand, within MPMX20_01477 at 1548.757 kb on - strand, within MPMX20_01477 at 1548.807 kb on + strand, within MPMX20_01477 at 1548.914 kb on + strand, within MPMX20_01477 at 1549.078 kb on + strand, within MPMX20_01477 at 1549.084 kb on + strand, within MPMX20_01477 at 1549.086 kb on - strand, within MPMX20_01477 at 1549.122 kb on + strand, within MPMX20_01477 at 1549.206 kb on - strand at 1549.206 kb on - strand at 1549.315 kb on + strand at 1549.323 kb on - strand at 1549.380 kb on - strand at 1549.380 kb on - strand at 1549.476 kb on - strand, within MPMX20_01478 at 1549.482 kb on + strand, within MPMX20_01478 at 1549.489 kb on + strand, within MPMX20_01478 at 1549.513 kb on + strand, within MPMX20_01478 at 1549.513 kb on + strand, within MPMX20_01478 at 1549.513 kb on + strand, within MPMX20_01478 at 1549.520 kb on + strand, within MPMX20_01478 at 1549.573 kb on - strand, within MPMX20_01478 at 1549.635 kb on + strand, within MPMX20_01478 at 1549.775 kb on + strand, within MPMX20_01478 at 1549.942 kb on - strand, within MPMX20_01478 at 1549.974 kb on - strand, within MPMX20_01478 at 1550.054 kb on + strand at 1550.171 kb on + strand at 1550.179 kb on - strand at 1550.214 kb on + strand at 1550.239 kb on - strand, within MPMX20_01479 at 1550.244 kb on - strand, within MPMX20_01479 at 1550.273 kb on + strand, within MPMX20_01479
Per-strain Table
Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Paraburkholderia pittii CO4 remove 1,547,085 + -0.4 1,547,093 - -3.1 1,547,108 + -0.2 1,547,290 + MPMX20_01476 0.15 -0.8 1,547,298 - MPMX20_01476 0.16 -2.4 1,547,298 - MPMX20_01476 0.16 -1.6 1,547,320 - MPMX20_01476 0.20 -2.8 1,547,350 - MPMX20_01476 0.25 +1.8 1,547,417 + MPMX20_01476 0.35 -0.4 1,547,417 + MPMX20_01476 0.35 -0.1 1,547,417 + MPMX20_01476 0.35 -1.8 1,547,417 + MPMX20_01476 0.35 -0.2 1,547,417 + MPMX20_01476 0.35 +0.5 1,547,417 + MPMX20_01476 0.35 +1.1 1,547,417 + MPMX20_01476 0.35 +0.1 1,547,425 - MPMX20_01476 0.37 +0.1 1,547,425 - MPMX20_01476 0.37 +1.5 1,547,425 - MPMX20_01476 0.37 -2.0 1,547,425 - MPMX20_01476 0.37 +0.5 1,547,425 - MPMX20_01476 0.37 -1.2 1,547,425 - MPMX20_01476 0.37 +0.7 1,547,425 - MPMX20_01476 0.37 +0.2 1,547,462 - MPMX20_01476 0.43 +1.0 1,547,502 - MPMX20_01476 0.49 -1.9 1,547,520 - MPMX20_01476 0.52 -1.5 1,547,538 + MPMX20_01476 0.55 -0.6 1,547,584 - MPMX20_01476 0.62 -1.6 1,547,598 + MPMX20_01476 0.64 +0.1 1,547,606 - MPMX20_01476 0.66 -0.3 1,547,621 - MPMX20_01476 0.68 +1.4 1,547,621 - MPMX20_01476 0.68 -0.7 1,547,629 + MPMX20_01476 0.69 -2.2 1,547,727 + MPMX20_01476 0.85 +0.5 1,547,727 + MPMX20_01476 0.85 +2.5 1,547,750 + MPMX20_01476 0.89 +1.5 1,547,939 - -1.5 1,548,015 - +1.0 1,548,022 - -0.3 1,548,041 - +0.2 1,548,068 + +0.6 1,548,106 + -0.6 1,548,106 + -0.2 1,548,114 - +1.1 1,548,114 - +1.0 1,548,114 - -1.9 1,548,210 - MPMX20_01477 0.11 +1.6 1,548,279 - MPMX20_01477 0.17 +2.3 1,548,298 + MPMX20_01477 0.18 +0.4 1,548,298 + MPMX20_01477 0.18 -0.1 1,548,298 + MPMX20_01477 0.18 -2.2 1,548,306 - MPMX20_01477 0.19 -0.0 1,548,306 - MPMX20_01477 0.19 +0.3 1,548,393 - MPMX20_01477 0.26 +2.1 1,548,498 - MPMX20_01477 0.35 -0.8 1,548,584 + MPMX20_01477 0.42 -1.6 1,548,601 + MPMX20_01477 0.43 +0.5 1,548,609 - MPMX20_01477 0.44 -1.1 1,548,609 - MPMX20_01477 0.44 +0.2 1,548,609 - MPMX20_01477 0.44 -1.1 1,548,620 + MPMX20_01477 0.45 -1.7 1,548,620 + MPMX20_01477 0.45 -0.2 1,548,620 + MPMX20_01477 0.45 -0.2 1,548,620 + MPMX20_01477 0.45 +0.5 1,548,628 - MPMX20_01477 0.46 -0.4 1,548,628 - MPMX20_01477 0.46 -1.6 1,548,645 - MPMX20_01477 0.47 +1.4 1,548,662 + MPMX20_01477 0.48 +0.4 1,548,757 - MPMX20_01477 0.56 -1.5 1,548,807 + MPMX20_01477 0.60 +0.3 1,548,914 + MPMX20_01477 0.69 +0.2 1,549,078 + MPMX20_01477 0.83 +0.5 1,549,084 + MPMX20_01477 0.83 -0.5 1,549,086 - MPMX20_01477 0.84 -0.4 1,549,122 + MPMX20_01477 0.87 +0.3 1,549,206 - -0.4 1,549,206 - +0.1 1,549,315 + -1.6 1,549,323 - -0.5 1,549,380 - -1.6 1,549,380 - -1.2 1,549,476 - MPMX20_01478 0.18 -0.8 1,549,482 + MPMX20_01478 0.19 -0.8 1,549,489 + MPMX20_01478 0.20 -0.1 1,549,513 + MPMX20_01478 0.23 -1.2 1,549,513 + MPMX20_01478 0.23 -0.5 1,549,513 + MPMX20_01478 0.23 -1.1 1,549,520 + MPMX20_01478 0.24 -1.7 1,549,573 - MPMX20_01478 0.31 +0.2 1,549,635 + MPMX20_01478 0.39 -0.5 1,549,775 + MPMX20_01478 0.58 -0.7 1,549,942 - MPMX20_01478 0.80 -0.7 1,549,974 - MPMX20_01478 0.84 -1.4 1,550,054 + -0.1 1,550,171 + -1.9 1,550,179 - -0.5 1,550,214 + +1.6 1,550,239 - MPMX20_01479 0.13 +0.4 1,550,244 - MPMX20_01479 0.13 -0.5 1,550,273 + MPMX20_01479 0.18 -0.3
Or see this region's nucleotide sequence