Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00340

Experiment: TSB plate, 1:1 coculture with Paraburkholderia pittii CO4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00337 and MPMX20_00338 are separated by 3 nucleotidesMPMX20_00338 and MPMX20_00339 are separated by 56 nucleotidesMPMX20_00339 and MPMX20_00340 are separated by 22 nucleotidesMPMX20_00340 and MPMX20_00341 are separated by 20 nucleotidesMPMX20_00341 and MPMX20_00342 are separated by 11 nucleotides MPMX20_00337: MPMX20_00337 - hypothetical protein, at 359,310 to 359,492 _00337 MPMX20_00338: MPMX20_00338 - Cytoskeleton-binding toxin CbtA, at 359,496 to 359,867 _00338 MPMX20_00339: MPMX20_00339 - Cytoskeleton bundling-enhancing antitoxin CbeA, at 359,924 to 360,289 _00339 MPMX20_00340: MPMX20_00340 - hypothetical protein, at 360,312 to 360,533 _00340 MPMX20_00341: MPMX20_00341 - hypothetical protein, at 360,554 to 361,033 _00341 MPMX20_00342: MPMX20_00342 - Antirestriction protein KlcA, at 361,045 to 361,524 _00342 Position (kb) 360 361Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 359.334 kb on + strand, within MPMX20_00337at 359.342 kb on + strand, within MPMX20_00337at 359.378 kb on + strand, within MPMX20_00337at 359.383 kb on + strand, within MPMX20_00337at 359.383 kb on + strand, within MPMX20_00337at 359.391 kb on - strand, within MPMX20_00337at 359.402 kb on + strand, within MPMX20_00337at 359.417 kb on + strand, within MPMX20_00337at 359.425 kb on - strand, within MPMX20_00337at 359.427 kb on + strand, within MPMX20_00337at 359.427 kb on + strand, within MPMX20_00337at 359.435 kb on - strand, within MPMX20_00337at 359.435 kb on - strand, within MPMX20_00337at 359.435 kb on - strand, within MPMX20_00337at 359.437 kb on + strand, within MPMX20_00337at 359.437 kb on + strand, within MPMX20_00337at 359.437 kb on + strand, within MPMX20_00337at 359.437 kb on + strand, within MPMX20_00337at 359.445 kb on - strand, within MPMX20_00337at 359.488 kb on - strandat 359.508 kb on + strandat 359.523 kb on - strandat 359.530 kb on - strandat 359.537 kb on - strand, within MPMX20_00338at 359.555 kb on + strand, within MPMX20_00338at 359.568 kb on - strand, within MPMX20_00338at 359.588 kb on + strand, within MPMX20_00338at 359.606 kb on - strand, within MPMX20_00338at 359.644 kb on + strand, within MPMX20_00338at 359.644 kb on + strand, within MPMX20_00338at 359.652 kb on - strand, within MPMX20_00338at 359.701 kb on - strand, within MPMX20_00338at 359.719 kb on + strand, within MPMX20_00338at 359.719 kb on + strand, within MPMX20_00338at 359.817 kb on + strand, within MPMX20_00338at 359.852 kb on + strandat 359.902 kb on + strandat 359.972 kb on - strand, within MPMX20_00339at 359.972 kb on - strand, within MPMX20_00339at 359.992 kb on - strand, within MPMX20_00339at 359.992 kb on - strand, within MPMX20_00339at 359.997 kb on - strand, within MPMX20_00339at 360.033 kb on - strand, within MPMX20_00339at 360.048 kb on + strand, within MPMX20_00339at 360.048 kb on + strand, within MPMX20_00339at 360.056 kb on - strand, within MPMX20_00339at 360.061 kb on - strand, within MPMX20_00339at 360.079 kb on + strand, within MPMX20_00339at 360.127 kb on - strand, within MPMX20_00339at 360.127 kb on - strand, within MPMX20_00339at 360.132 kb on - strand, within MPMX20_00339at 360.132 kb on - strand, within MPMX20_00339at 360.188 kb on + strand, within MPMX20_00339at 360.213 kb on - strand, within MPMX20_00339at 360.248 kb on - strand, within MPMX20_00339at 360.250 kb on - strand, within MPMX20_00339at 360.266 kb on + strandat 360.266 kb on + strandat 360.271 kb on + strandat 360.299 kb on + strandat 360.299 kb on + strandat 360.307 kb on - strandat 360.307 kb on - strandat 360.307 kb on - strandat 360.320 kb on + strandat 360.320 kb on + strandat 360.328 kb on - strandat 360.328 kb on - strandat 360.328 kb on - strandat 360.328 kb on - strandat 360.338 kb on - strand, within MPMX20_00340at 360.399 kb on + strand, within MPMX20_00340at 360.407 kb on - strand, within MPMX20_00340at 360.495 kb on + strand, within MPMX20_00340at 360.503 kb on - strand, within MPMX20_00340at 360.507 kb on + strand, within MPMX20_00340at 360.515 kb on - strandat 360.593 kb on - strandat 360.601 kb on + strandat 360.601 kb on + strandat 360.609 kb on - strand, within MPMX20_00341at 360.609 kb on - strand, within MPMX20_00341at 360.623 kb on + strand, within MPMX20_00341at 360.658 kb on + strand, within MPMX20_00341at 360.658 kb on + strand, within MPMX20_00341at 360.675 kb on + strand, within MPMX20_00341at 360.683 kb on - strand, within MPMX20_00341at 360.704 kb on - strand, within MPMX20_00341at 360.710 kb on - strand, within MPMX20_00341at 360.750 kb on + strand, within MPMX20_00341at 360.750 kb on + strand, within MPMX20_00341at 360.758 kb on - strand, within MPMX20_00341at 360.758 kb on - strand, within MPMX20_00341at 360.769 kb on + strand, within MPMX20_00341at 360.777 kb on - strand, within MPMX20_00341at 360.777 kb on - strand, within MPMX20_00341at 360.856 kb on + strand, within MPMX20_00341at 360.906 kb on + strand, within MPMX20_00341at 360.958 kb on + strand, within MPMX20_00341at 360.958 kb on + strand, within MPMX20_00341at 360.959 kb on + strand, within MPMX20_00341at 360.959 kb on + strand, within MPMX20_00341at 360.959 kb on + strand, within MPMX20_00341at 360.967 kb on - strand, within MPMX20_00341at 360.967 kb on - strand, within MPMX20_00341at 361.013 kb on + strandat 361.035 kb on + strandat 361.036 kb on + strandat 361.044 kb on - strandat 361.072 kb on + strandat 361.072 kb on + strandat 361.112 kb on - strand, within MPMX20_00342at 361.164 kb on + strand, within MPMX20_00342at 361.203 kb on + strand, within MPMX20_00342at 361.203 kb on + strand, within MPMX20_00342at 361.204 kb on - strand, within MPMX20_00342at 361.226 kb on + strand, within MPMX20_00342at 361.226 kb on + strand, within MPMX20_00342at 361.234 kb on - strand, within MPMX20_00342at 361.234 kb on - strand, within MPMX20_00342at 361.234 kb on - strand, within MPMX20_00342at 361.234 kb on - strand, within MPMX20_00342at 361.295 kb on + strand, within MPMX20_00342at 361.295 kb on + strand, within MPMX20_00342at 361.370 kb on - strand, within MPMX20_00342at 361.396 kb on + strand, within MPMX20_00342at 361.491 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Paraburkholderia pittii CO4
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359,334 + MPMX20_00337 0.13 +0.8
359,342 + MPMX20_00337 0.17 +0.6
359,378 + MPMX20_00337 0.37 -0.7
359,383 + MPMX20_00337 0.40 -1.4
359,383 + MPMX20_00337 0.40 -1.3
359,391 - MPMX20_00337 0.44 -2.1
359,402 + MPMX20_00337 0.50 -0.3
359,417 + MPMX20_00337 0.58 -1.0
359,425 - MPMX20_00337 0.63 -1.2
359,427 + MPMX20_00337 0.64 +0.4
359,427 + MPMX20_00337 0.64 -2.7
359,435 - MPMX20_00337 0.68 -1.4
359,435 - MPMX20_00337 0.68 +1.5
359,435 - MPMX20_00337 0.68 -2.4
359,437 + MPMX20_00337 0.69 +0.2
359,437 + MPMX20_00337 0.69 +0.3
359,437 + MPMX20_00337 0.69 -2.9
359,437 + MPMX20_00337 0.69 -0.9
359,445 - MPMX20_00337 0.74 -3.0
359,488 - -0.4
359,508 + -0.9
359,523 - +0.2
359,530 - -0.6
359,537 - MPMX20_00338 0.11 -0.6
359,555 + MPMX20_00338 0.16 +0.2
359,568 - MPMX20_00338 0.19 +0.4
359,588 + MPMX20_00338 0.25 +0.1
359,606 - MPMX20_00338 0.30 +0.3
359,644 + MPMX20_00338 0.40 +1.5
359,644 + MPMX20_00338 0.40 +1.0
359,652 - MPMX20_00338 0.42 +2.8
359,701 - MPMX20_00338 0.55 -2.0
359,719 + MPMX20_00338 0.60 +2.4
359,719 + MPMX20_00338 0.60 +0.7
359,817 + MPMX20_00338 0.86 -1.5
359,852 + -1.8
359,902 + -0.4
359,972 - MPMX20_00339 0.13 -0.8
359,972 - MPMX20_00339 0.13 -1.2
359,992 - MPMX20_00339 0.19 +0.4
359,992 - MPMX20_00339 0.19 -0.0
359,997 - MPMX20_00339 0.20 -0.2
360,033 - MPMX20_00339 0.30 -0.2
360,048 + MPMX20_00339 0.34 +0.5
360,048 + MPMX20_00339 0.34 -2.0
360,056 - MPMX20_00339 0.36 -0.1
360,061 - MPMX20_00339 0.37 +0.4
360,079 + MPMX20_00339 0.42 -1.8
360,127 - MPMX20_00339 0.55 +0.4
360,127 - MPMX20_00339 0.55 -3.8
360,132 - MPMX20_00339 0.57 -3.0
360,132 - MPMX20_00339 0.57 -0.9
360,188 + MPMX20_00339 0.72 -1.4
360,213 - MPMX20_00339 0.79 +1.5
360,248 - MPMX20_00339 0.89 +1.4
360,250 - MPMX20_00339 0.89 +1.0
360,266 + +0.0
360,266 + -1.8
360,271 + -1.9
360,299 + -0.2
360,299 + -0.2
360,307 - +2.4
360,307 - -1.8
360,307 - -0.2
360,320 + -1.9
360,320 + -1.0
360,328 - +0.6
360,328 - -1.6
360,328 - -0.2
360,328 - -0.6
360,338 - MPMX20_00340 0.12 -0.5
360,399 + MPMX20_00340 0.39 +0.9
360,407 - MPMX20_00340 0.43 -0.9
360,495 + MPMX20_00340 0.82 +0.6
360,503 - MPMX20_00340 0.86 +2.9
360,507 + MPMX20_00340 0.88 -0.0
360,515 - -2.3
360,593 - -0.8
360,601 + -0.9
360,601 + +1.0
360,609 - MPMX20_00341 0.11 +0.3
360,609 - MPMX20_00341 0.11 +1.4
360,623 + MPMX20_00341 0.14 +0.4
360,658 + MPMX20_00341 0.22 +1.8
360,658 + MPMX20_00341 0.22 +1.9
360,675 + MPMX20_00341 0.25 +0.1
360,683 - MPMX20_00341 0.27 +0.2
360,704 - MPMX20_00341 0.31 +0.8
360,710 - MPMX20_00341 0.33 -1.0
360,750 + MPMX20_00341 0.41 -0.1
360,750 + MPMX20_00341 0.41 +0.1
360,758 - MPMX20_00341 0.42 +0.4
360,758 - MPMX20_00341 0.42 +0.3
360,769 + MPMX20_00341 0.45 -1.7
360,777 - MPMX20_00341 0.46 -1.4
360,777 - MPMX20_00341 0.46 -1.6
360,856 + MPMX20_00341 0.63 -0.3
360,906 + MPMX20_00341 0.73 -0.9
360,958 + MPMX20_00341 0.84 +1.7
360,958 + MPMX20_00341 0.84 -1.7
360,959 + MPMX20_00341 0.84 -0.4
360,959 + MPMX20_00341 0.84 -0.2
360,959 + MPMX20_00341 0.84 -0.5
360,967 - MPMX20_00341 0.86 +5.4
360,967 - MPMX20_00341 0.86 -0.0
361,013 + -0.9
361,035 + +0.8
361,036 + -0.7
361,044 - +3.1
361,072 + -1.1
361,072 + -0.7
361,112 - MPMX20_00342 0.14 -0.2
361,164 + MPMX20_00342 0.25 +0.2
361,203 + MPMX20_00342 0.33 -0.6
361,203 + MPMX20_00342 0.33 -0.5
361,204 - MPMX20_00342 0.33 +2.4
361,226 + MPMX20_00342 0.38 +0.8
361,226 + MPMX20_00342 0.38 +0.7
361,234 - MPMX20_00342 0.39 +0.4
361,234 - MPMX20_00342 0.39 -0.2
361,234 - MPMX20_00342 0.39 +1.0
361,234 - MPMX20_00342 0.39 -0.8
361,295 + MPMX20_00342 0.52 -1.7
361,295 + MPMX20_00342 0.52 -1.5
361,370 - MPMX20_00342 0.68 -0.2
361,396 + MPMX20_00342 0.73 +0.1
361,491 + +0.4

Or see this region's nucleotide sequence