Strain Fitness in Azospirillum brasilense Sp245 around GFF2272

Experiment: 1-octen-3-ol 0.6784116667 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAZOBR_RS11870 and GFF2272 are separated by 124 nucleotidesGFF2272 and GFF2273 are separated by 100 nucleotidesGFF2273 and AZOBR_RS11880 are separated by 19 nucleotides AZOBR_RS11870: AZOBR_RS11870 - peptidase, at 2,495,778 to 2,497,094 _RS11870 GFF2272 - gamma-glutamyltranspeptidase, at 2,497,219 to 2,498,248 GFF2272 GFF2273 - gamma-glutamyltranspeptidase, at 2,498,349 to 2,498,598 GFF2273 AZOBR_RS11880: AZOBR_RS11880 - 1-aminocyclopropane-1-carboxylate deaminase, at 2,498,618 to 2,499,772 _RS11880 Position (kb) 2497 2498 2499Strain fitness (log2 ratio) -2 -1 0 1 2at 2496.274 kb on + strand, within AZOBR_RS11870at 2496.275 kb on - strand, within AZOBR_RS11870at 2496.320 kb on - strand, within AZOBR_RS11870at 2496.355 kb on + strand, within AZOBR_RS11870at 2496.587 kb on - strand, within AZOBR_RS11870at 2496.587 kb on - strand, within AZOBR_RS11870at 2497.001 kb on + strandat 2497.001 kb on + strandat 2497.002 kb on - strandat 2497.002 kb on - strandat 2497.274 kb on - strandat 2497.810 kb on + strand, within GFF2272at 2497.810 kb on + strand, within GFF2272at 2498.997 kb on - strand, within AZOBR_RS11880at 2499.236 kb on + strand, within AZOBR_RS11880at 2499.236 kb on + strand, within AZOBR_RS11880at 2499.237 kb on - strand, within AZOBR_RS11880

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 1-octen-3-ol 0.6784116667 mM
remove
2,496,274 + AZOBR_RS11870 0.38 +0.5
2,496,275 - AZOBR_RS11870 0.38 +0.5
2,496,320 - AZOBR_RS11870 0.41 +0.5
2,496,355 + AZOBR_RS11870 0.44 +1.1
2,496,587 - AZOBR_RS11870 0.61 +2.1
2,496,587 - AZOBR_RS11870 0.61 +2.1
2,497,001 + +0.5
2,497,001 + -0.7
2,497,002 - +2.1
2,497,002 - +2.1
2,497,274 - -0.1
2,497,810 + GFF2272 0.57 -2.4
2,497,810 + GFF2272 0.57 -0.8
2,498,997 - AZOBR_RS11880 0.33 +0.1
2,499,236 + AZOBR_RS11880 0.54 +1.7
2,499,236 + AZOBR_RS11880 0.54 +1.1
2,499,237 - AZOBR_RS11880 0.54 -0.4

Or see this region's nucleotide sequence