Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS20375

Experiment: 1-octen-3-ol 0.6784116667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS20370 and AZOBR_RS20375 are separated by 205 nucleotidesAZOBR_RS20375 and AZOBR_RS20380 are separated by 179 nucleotides AZOBR_RS20370: AZOBR_RS20370 - protein hupE, at 1,338,186 to 1,338,788 _RS20370 AZOBR_RS20375: AZOBR_RS20375 - beta-lactamase, at 1,338,994 to 1,339,989 _RS20375 AZOBR_RS20380: AZOBR_RS20380 - beta-lactamase, at 1,340,169 to 1,341,173 _RS20380 Position (kb) 1338 1339 1340Strain fitness (log2 ratio) -1 0 1 2at 1338.108 kb on - strandat 1338.108 kb on - strandat 1338.166 kb on + strandat 1338.167 kb on - strandat 1338.167 kb on - strandat 1338.625 kb on - strand, within AZOBR_RS20370at 1338.938 kb on + strandat 1338.938 kb on + strandat 1338.939 kb on - strandat 1338.940 kb on + strandat 1338.940 kb on + strandat 1338.940 kb on + strandat 1338.940 kb on + strandat 1338.941 kb on - strandat 1339.196 kb on - strand, within AZOBR_RS20375at 1339.196 kb on - strand, within AZOBR_RS20375at 1339.288 kb on + strand, within AZOBR_RS20375at 1339.288 kb on + strand, within AZOBR_RS20375at 1339.289 kb on - strand, within AZOBR_RS20375at 1339.289 kb on - strand, within AZOBR_RS20375at 1339.393 kb on + strand, within AZOBR_RS20375at 1339.394 kb on - strand, within AZOBR_RS20375at 1339.637 kb on - strand, within AZOBR_RS20375at 1339.637 kb on - strand, within AZOBR_RS20375at 1339.637 kb on - strand, within AZOBR_RS20375at 1339.711 kb on + strand, within AZOBR_RS20375at 1339.711 kb on + strand, within AZOBR_RS20375at 1339.942 kb on + strandat 1339.943 kb on - strandat 1339.943 kb on - strandat 1339.943 kb on - strandat 1340.310 kb on + strand, within AZOBR_RS20380at 1340.311 kb on - strand, within AZOBR_RS20380at 1340.349 kb on + strand, within AZOBR_RS20380at 1340.820 kb on + strand, within AZOBR_RS20380at 1340.895 kb on + strand, within AZOBR_RS20380

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-octen-3-ol 0.6784116667 mM
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1,338,108 - -0.1
1,338,108 - +0.5
1,338,166 + +1.8
1,338,167 - +2.1
1,338,167 - +2.1
1,338,625 - AZOBR_RS20370 0.73 -0.9
1,338,938 + -0.7
1,338,938 + +0.0
1,338,939 - +0.3
1,338,940 + -0.3
1,338,940 + -1.0
1,338,940 + -0.9
1,338,940 + +0.1
1,338,941 - +1.3
1,339,196 - AZOBR_RS20375 0.20 +0.7
1,339,196 - AZOBR_RS20375 0.20 -0.1
1,339,288 + AZOBR_RS20375 0.30 -0.4
1,339,288 + AZOBR_RS20375 0.30 +0.4
1,339,289 - AZOBR_RS20375 0.30 +0.1
1,339,289 - AZOBR_RS20375 0.30 +0.1
1,339,393 + AZOBR_RS20375 0.40 +0.0
1,339,394 - AZOBR_RS20375 0.40 -0.7
1,339,637 - AZOBR_RS20375 0.65 -0.2
1,339,637 - AZOBR_RS20375 0.65 -0.6
1,339,637 - AZOBR_RS20375 0.65 -0.9
1,339,711 + AZOBR_RS20375 0.72 -0.2
1,339,711 + AZOBR_RS20375 0.72 +0.7
1,339,942 + +0.2
1,339,943 - +0.1
1,339,943 - -0.1
1,339,943 - +0.1
1,340,310 + AZOBR_RS20380 0.14 -1.0
1,340,311 - AZOBR_RS20380 0.14 -0.2
1,340,349 + AZOBR_RS20380 0.18 -0.3
1,340,820 + AZOBR_RS20380 0.65 -0.1
1,340,895 + AZOBR_RS20380 0.72 -1.1

Or see this region's nucleotide sequence