Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS26470

Experiment: 1-octen-3-ol 0.7753276667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS26465 and AZOBR_RS26470 are separated by 98 nucleotidesAZOBR_RS26470 and AZOBR_RS26475 are separated by 49 nucleotides AZOBR_RS26465: AZOBR_RS26465 - MmgE/PrpD family protein 4, at 82,222 to 83,481 _RS26465 AZOBR_RS26470: AZOBR_RS26470 - acyl-CoA synthetase, at 83,580 to 85,094 _RS26470 AZOBR_RS26475: AZOBR_RS26475 - acyl-CoA dehydrogenase, at 85,144 to 86,316 _RS26475 Position (kb) 83 84 85 86Strain fitness (log2 ratio) -1 0 1at 84.218 kb on - strand, within AZOBR_RS26470at 84.218 kb on - strand, within AZOBR_RS26470at 84.313 kb on + strand, within AZOBR_RS26470at 84.496 kb on + strand, within AZOBR_RS26470at 84.497 kb on - strand, within AZOBR_RS26470at 84.497 kb on - strand, within AZOBR_RS26470at 84.497 kb on - strand, within AZOBR_RS26470at 84.572 kb on - strand, within AZOBR_RS26470at 84.629 kb on - strand, within AZOBR_RS26470at 84.845 kb on - strand, within AZOBR_RS26470at 85.027 kb on + strandat 85.028 kb on - strandat 85.028 kb on - strandat 85.259 kb on + strandat 85.260 kb on - strandat 85.260 kb on - strandat 85.260 kb on - strandat 85.365 kb on - strand, within AZOBR_RS26475at 85.365 kb on - strand, within AZOBR_RS26475at 85.512 kb on - strand, within AZOBR_RS26475at 85.512 kb on - strand, within AZOBR_RS26475at 85.664 kb on + strand, within AZOBR_RS26475at 85.664 kb on + strand, within AZOBR_RS26475at 85.664 kb on + strand, within AZOBR_RS26475

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-octen-3-ol 0.7753276667 mM
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84,218 - AZOBR_RS26470 0.42 -0.0
84,218 - AZOBR_RS26470 0.42 -0.4
84,313 + AZOBR_RS26470 0.48 +0.7
84,496 + AZOBR_RS26470 0.60 -0.9
84,497 - AZOBR_RS26470 0.61 -0.9
84,497 - AZOBR_RS26470 0.61 -0.2
84,497 - AZOBR_RS26470 0.61 +0.3
84,572 - AZOBR_RS26470 0.65 -0.8
84,629 - AZOBR_RS26470 0.69 -0.5
84,845 - AZOBR_RS26470 0.83 -0.4
85,027 + +0.1
85,028 - +0.3
85,028 - +0.0
85,259 + -0.2
85,260 - +0.6
85,260 - +0.9
85,260 - -0.0
85,365 - AZOBR_RS26475 0.19 +1.3
85,365 - AZOBR_RS26475 0.19 +0.6
85,512 - AZOBR_RS26475 0.31 +0.4
85,512 - AZOBR_RS26475 0.31 +0.7
85,664 + AZOBR_RS26475 0.44 +0.0
85,664 + AZOBR_RS26475 0.44 -0.1
85,664 + AZOBR_RS26475 0.44 -0.2

Or see this region's nucleotide sequence