Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS09150

Experiment: 1-octen-3-ol 0.7753276667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS09140 and AZOBR_RS09145 are separated by 56 nucleotidesAZOBR_RS09145 and AZOBR_RS09150 are separated by 13 nucleotidesAZOBR_RS09150 and AZOBR_RS09155 are separated by 96 nucleotides AZOBR_RS09140: AZOBR_RS09140 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 1,909,616 to 1,910,920 _RS09140 AZOBR_RS09145: AZOBR_RS09145 - hypothetical protein, at 1,910,977 to 1,911,441 _RS09145 AZOBR_RS09150: AZOBR_RS09150 - peroxiredoxin, at 1,911,455 to 1,911,874 _RS09150 AZOBR_RS09155: AZOBR_RS09155 - short-chain dehydrogenase, at 1,911,971 to 1,913,002 _RS09155 Position (kb) 1911 1912Strain fitness (log2 ratio) -1 0 1at 1911.878 kb on + strandat 1911.878 kb on + strandat 1911.893 kb on + strandat 1911.894 kb on - strandat 1911.894 kb on - strandat 1912.331 kb on + strand, within AZOBR_RS09155at 1912.331 kb on + strand, within AZOBR_RS09155at 1912.332 kb on - strand, within AZOBR_RS09155at 1912.332 kb on - strand, within AZOBR_RS09155at 1912.332 kb on - strand, within AZOBR_RS09155at 1912.332 kb on - strand, within AZOBR_RS09155at 1912.452 kb on - strand, within AZOBR_RS09155at 1912.743 kb on - strand, within AZOBR_RS09155

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-octen-3-ol 0.7753276667 mM
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1,911,878 + +0.1
1,911,878 + -1.0
1,911,893 + -0.1
1,911,894 - -0.6
1,911,894 - -0.5
1,912,331 + AZOBR_RS09155 0.35 -1.2
1,912,331 + AZOBR_RS09155 0.35 +0.5
1,912,332 - AZOBR_RS09155 0.35 +0.2
1,912,332 - AZOBR_RS09155 0.35 +0.4
1,912,332 - AZOBR_RS09155 0.35 +0.3
1,912,332 - AZOBR_RS09155 0.35 -0.4
1,912,452 - AZOBR_RS09155 0.47 -0.2
1,912,743 - AZOBR_RS09155 0.75 -1.1

Or see this region's nucleotide sequence